Job ID = 16436227 SRX = SRX12178873 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:09:40 prefetch.2.10.7: 1) Downloading 'SRR15888041'... 2022-08-02T02:09:40 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:12:04 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:12:04 prefetch.2.10.7: 1) 'SRR15888041' was downloaded successfully 2022-08-02T02:12:04 prefetch.2.10.7: 'SRR15888041' has 0 unresolved dependencies Read 49475428 spots for SRR15888041/SRR15888041.sra Written 49475428 spots for SRR15888041/SRR15888041.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437481 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:13:11 49475428 reads; of these: 49475428 (100.00%) were paired; of these: 14068010 (28.43%) aligned concordantly 0 times 25811486 (52.17%) aligned concordantly exactly 1 time 9595932 (19.40%) aligned concordantly >1 times ---- 14068010 pairs aligned concordantly 0 times; of these: 5441573 (38.68%) aligned discordantly 1 time ---- 8626437 pairs aligned 0 times concordantly or discordantly; of these: 17252874 mates make up the pairs; of these: 10181604 (59.01%) aligned 0 times 4499070 (26.08%) aligned exactly 1 time 2572200 (14.91%) aligned >1 times 89.71% overall alignment rate Time searching: 01:13:11 Overall time: 01:13:11 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9370748 / 40701161 = 0.2302 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 13:03:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 13:03:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 13:03:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 13:03:10: 1000000 INFO @ Tue, 02 Aug 2022 13:03:14: 2000000 INFO @ Tue, 02 Aug 2022 13:03:18: 3000000 INFO @ Tue, 02 Aug 2022 13:03:23: 4000000 INFO @ Tue, 02 Aug 2022 13:03:27: 5000000 INFO @ Tue, 02 Aug 2022 13:03:32: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 13:03:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 13:03:35: #1 read tag files... INFO @ Tue, 02 Aug 2022 13:03:35: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 13:03:36: 7000000 INFO @ Tue, 02 Aug 2022 13:03:41: 1000000 INFO @ Tue, 02 Aug 2022 13:03:41: 8000000 INFO @ Tue, 02 Aug 2022 13:03:46: 9000000 INFO @ Tue, 02 Aug 2022 13:03:46: 2000000 INFO @ Tue, 02 Aug 2022 13:03:50: 10000000 INFO @ Tue, 02 Aug 2022 13:03:52: 3000000 INFO @ Tue, 02 Aug 2022 13:03:55: 11000000 INFO @ Tue, 02 Aug 2022 13:03:57: 4000000 INFO @ Tue, 02 Aug 2022 13:04:00: 12000000 INFO @ Tue, 02 Aug 2022 13:04:02: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 13:04:04: 13000000 INFO @ Tue, 02 Aug 2022 13:04:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 13:04:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 13:04:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 13:04:08: 6000000 INFO @ Tue, 02 Aug 2022 13:04:09: 14000000 INFO @ Tue, 02 Aug 2022 13:04:11: 1000000 INFO @ Tue, 02 Aug 2022 13:04:13: 15000000 INFO @ Tue, 02 Aug 2022 13:04:14: 7000000 INFO @ Tue, 02 Aug 2022 13:04:17: 2000000 INFO @ Tue, 02 Aug 2022 13:04:18: 16000000 INFO @ Tue, 02 Aug 2022 13:04:19: 8000000 INFO @ Tue, 02 Aug 2022 13:04:22: 17000000 INFO @ Tue, 02 Aug 2022 13:04:22: 3000000 INFO @ Tue, 02 Aug 2022 13:04:25: 9000000 INFO @ Tue, 02 Aug 2022 13:04:27: 18000000 INFO @ Tue, 02 Aug 2022 13:04:28: 4000000 INFO @ Tue, 02 Aug 2022 13:04:30: 10000000 INFO @ Tue, 02 Aug 2022 13:04:31: 19000000 INFO @ Tue, 02 Aug 2022 13:04:34: 5000000 INFO @ Tue, 02 Aug 2022 13:04:36: 11000000 INFO @ Tue, 02 Aug 2022 13:04:37: 20000000 INFO @ Tue, 02 Aug 2022 13:04:40: 6000000 INFO @ Tue, 02 Aug 2022 13:04:41: 21000000 INFO @ Tue, 02 Aug 2022 13:04:42: 12000000 INFO @ Tue, 02 Aug 2022 13:04:45: 7000000 INFO @ Tue, 02 Aug 2022 13:04:46: 22000000 INFO @ Tue, 02 Aug 2022 13:04:48: 13000000 INFO @ Tue, 02 Aug 2022 13:04:50: 23000000 INFO @ Tue, 02 Aug 2022 13:04:51: 8000000 INFO @ Tue, 02 Aug 2022 13:04:55: 14000000 INFO @ Tue, 02 Aug 2022 13:04:55: 24000000 INFO @ Tue, 02 Aug 2022 13:04:57: 9000000 INFO @ Tue, 02 Aug 2022 13:05:00: 25000000 INFO @ Tue, 02 Aug 2022 13:05:00: 15000000 INFO @ Tue, 02 Aug 2022 13:05:03: 10000000 INFO @ Tue, 02 Aug 2022 13:05:05: 26000000 INFO @ Tue, 02 Aug 2022 13:05:06: 16000000 INFO @ Tue, 02 Aug 2022 13:05:09: 11000000 INFO @ Tue, 02 Aug 2022 13:05:09: 27000000 INFO @ Tue, 02 Aug 2022 13:05:12: 17000000 INFO @ Tue, 02 Aug 2022 13:05:15: 28000000 INFO @ Tue, 02 Aug 2022 13:05:16: 12000000 INFO @ Tue, 02 Aug 2022 13:05:18: 18000000 INFO @ Tue, 02 Aug 2022 13:05:20: 29000000 INFO @ Tue, 02 Aug 2022 13:05:22: 13000000 INFO @ Tue, 02 Aug 2022 13:05:24: 19000000 INFO @ Tue, 02 Aug 2022 13:05:24: 30000000 INFO @ Tue, 02 Aug 2022 13:05:28: 14000000 INFO @ Tue, 02 Aug 2022 13:05:30: 31000000 INFO @ Tue, 02 Aug 2022 13:05:30: 20000000 INFO @ Tue, 02 Aug 2022 13:05:34: 15000000 INFO @ Tue, 02 Aug 2022 13:05:34: 32000000 INFO @ Tue, 02 Aug 2022 13:05:37: 21000000 INFO @ Tue, 02 Aug 2022 13:05:39: 33000000 INFO @ Tue, 02 Aug 2022 13:05:40: 16000000 INFO @ Tue, 02 Aug 2022 13:05:43: 22000000 INFO @ Tue, 02 Aug 2022 13:05:44: 34000000 INFO @ Tue, 02 Aug 2022 13:05:46: 17000000 INFO @ Tue, 02 Aug 2022 13:05:49: 23000000 INFO @ Tue, 02 Aug 2022 13:05:49: 35000000 INFO @ Tue, 02 Aug 2022 13:05:52: 18000000 INFO @ Tue, 02 Aug 2022 13:05:53: 36000000 INFO @ Tue, 02 Aug 2022 13:05:55: 24000000 INFO @ Tue, 02 Aug 2022 13:05:58: 37000000 INFO @ Tue, 02 Aug 2022 13:05:58: 19000000 INFO @ Tue, 02 Aug 2022 13:06:01: 25000000 INFO @ Tue, 02 Aug 2022 13:06:03: 38000000 INFO @ Tue, 02 Aug 2022 13:06:04: 20000000 INFO @ Tue, 02 Aug 2022 13:06:07: 26000000 INFO @ Tue, 02 Aug 2022 13:06:08: 39000000 INFO @ Tue, 02 Aug 2022 13:06:10: 21000000 INFO @ Tue, 02 Aug 2022 13:06:13: 27000000 INFO @ Tue, 02 Aug 2022 13:06:13: 40000000 INFO @ Tue, 02 Aug 2022 13:06:16: 22000000 INFO @ Tue, 02 Aug 2022 13:06:18: 41000000 INFO @ Tue, 02 Aug 2022 13:06:19: 28000000 INFO @ Tue, 02 Aug 2022 13:06:22: 23000000 INFO @ Tue, 02 Aug 2022 13:06:23: 42000000 INFO @ Tue, 02 Aug 2022 13:06:25: 29000000 INFO @ Tue, 02 Aug 2022 13:06:28: 24000000 INFO @ Tue, 02 Aug 2022 13:06:28: 43000000 INFO @ Tue, 02 Aug 2022 13:06:31: 30000000 INFO @ Tue, 02 Aug 2022 13:06:34: 44000000 INFO @ Tue, 02 Aug 2022 13:06:34: 25000000 INFO @ Tue, 02 Aug 2022 13:06:36: 31000000 INFO @ Tue, 02 Aug 2022 13:06:39: 45000000 INFO @ Tue, 02 Aug 2022 13:06:40: 26000000 INFO @ Tue, 02 Aug 2022 13:06:42: 32000000 INFO @ Tue, 02 Aug 2022 13:06:44: 46000000 INFO @ Tue, 02 Aug 2022 13:06:46: 27000000 INFO @ Tue, 02 Aug 2022 13:06:48: 33000000 INFO @ Tue, 02 Aug 2022 13:06:49: 47000000 INFO @ Tue, 02 Aug 2022 13:06:52: 28000000 INFO @ Tue, 02 Aug 2022 13:06:54: 48000000 INFO @ Tue, 02 Aug 2022 13:06:54: 34000000 INFO @ Tue, 02 Aug 2022 13:06:58: 29000000 INFO @ Tue, 02 Aug 2022 13:06:59: 49000000 INFO @ Tue, 02 Aug 2022 13:07:00: 35000000 INFO @ Tue, 02 Aug 2022 13:07:04: 50000000 INFO @ Tue, 02 Aug 2022 13:07:04: 30000000 INFO @ Tue, 02 Aug 2022 13:07:06: 36000000 INFO @ Tue, 02 Aug 2022 13:07:09: 51000000 INFO @ Tue, 02 Aug 2022 13:07:10: 31000000 INFO @ Tue, 02 Aug 2022 13:07:12: 37000000 INFO @ Tue, 02 Aug 2022 13:07:14: 52000000 INFO @ Tue, 02 Aug 2022 13:07:16: 32000000 INFO @ Tue, 02 Aug 2022 13:07:18: 53000000 INFO @ Tue, 02 Aug 2022 13:07:18: 38000000 INFO @ Tue, 02 Aug 2022 13:07:22: 33000000 INFO @ Tue, 02 Aug 2022 13:07:23: 54000000 INFO @ Tue, 02 Aug 2022 13:07:24: 39000000 INFO @ Tue, 02 Aug 2022 13:07:28: 55000000 INFO @ Tue, 02 Aug 2022 13:07:29: 34000000 INFO @ Tue, 02 Aug 2022 13:07:31: 40000000 INFO @ Tue, 02 Aug 2022 13:07:32: 56000000 INFO @ Tue, 02 Aug 2022 13:07:35: 35000000 INFO @ Tue, 02 Aug 2022 13:07:37: 41000000 INFO @ Tue, 02 Aug 2022 13:07:37: 57000000 INFO @ Tue, 02 Aug 2022 13:07:41: 36000000 INFO @ Tue, 02 Aug 2022 13:07:42: 58000000 INFO @ Tue, 02 Aug 2022 13:07:43: 42000000 INFO @ Tue, 02 Aug 2022 13:07:47: 37000000 INFO @ Tue, 02 Aug 2022 13:07:47: 59000000 INFO @ Tue, 02 Aug 2022 13:07:49: 43000000 INFO @ Tue, 02 Aug 2022 13:07:53: 60000000 INFO @ Tue, 02 Aug 2022 13:07:53: 38000000 INFO @ Tue, 02 Aug 2022 13:07:55: 44000000 INFO @ Tue, 02 Aug 2022 13:07:58: 61000000 INFO @ Tue, 02 Aug 2022 13:07:59: 39000000 INFO @ Tue, 02 Aug 2022 13:08:01: 45000000 INFO @ Tue, 02 Aug 2022 13:08:03: 62000000 INFO @ Tue, 02 Aug 2022 13:08:05: 40000000 INFO @ Tue, 02 Aug 2022 13:08:07: 46000000 INFO @ Tue, 02 Aug 2022 13:08:08: 63000000 INFO @ Tue, 02 Aug 2022 13:08:11: 41000000 INFO @ Tue, 02 Aug 2022 13:08:13: 47000000 INFO @ Tue, 02 Aug 2022 13:08:13: 64000000 INFO @ Tue, 02 Aug 2022 13:08:16: 42000000 INFO @ Tue, 02 Aug 2022 13:08:18: 65000000 INFO @ Tue, 02 Aug 2022 13:08:19: 48000000 INFO @ Tue, 02 Aug 2022 13:08:23: 43000000 INFO @ Tue, 02 Aug 2022 13:08:23: 66000000 INFO @ Tue, 02 Aug 2022 13:08:24: 49000000 INFO @ Tue, 02 Aug 2022 13:08:29: 44000000 INFO @ Tue, 02 Aug 2022 13:08:29: 67000000 INFO @ Tue, 02 Aug 2022 13:08:30: 50000000 INFO @ Tue, 02 Aug 2022 13:08:34: 68000000 INFO @ Tue, 02 Aug 2022 13:08:35: 45000000 INFO @ Tue, 02 Aug 2022 13:08:36: 51000000 INFO @ Tue, 02 Aug 2022 13:08:39: 69000000 INFO @ Tue, 02 Aug 2022 13:08:41: 46000000 INFO @ Tue, 02 Aug 2022 13:08:42: 52000000 INFO @ Tue, 02 Aug 2022 13:08:45: 70000000 INFO @ Tue, 02 Aug 2022 13:08:46: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 13:08:46: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 13:08:46: #1 total tags in treatment: 26591205 INFO @ Tue, 02 Aug 2022 13:08:46: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 13:08:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 13:08:47: #1 tags after filtering in treatment: 18310547 INFO @ Tue, 02 Aug 2022 13:08:47: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 13:08:47: #1 finished! INFO @ Tue, 02 Aug 2022 13:08:47: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 13:08:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 13:08:47: 47000000 INFO @ Tue, 02 Aug 2022 13:08:48: #2 number of paired peaks: 188 WARNING @ Tue, 02 Aug 2022 13:08:48: Fewer paired peaks (188) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 188 pairs to build model! INFO @ Tue, 02 Aug 2022 13:08:48: start model_add_line... INFO @ Tue, 02 Aug 2022 13:08:48: start X-correlation... INFO @ Tue, 02 Aug 2022 13:08:48: end of X-cor INFO @ Tue, 02 Aug 2022 13:08:48: #2 finished! INFO @ Tue, 02 Aug 2022 13:08:48: #2 predicted fragment length is 101 bps INFO @ Tue, 02 Aug 2022 13:08:48: #2 alternative fragment length(s) may be 4,85,101 bps INFO @ Tue, 02 Aug 2022 13:08:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.05_model.r INFO @ Tue, 02 Aug 2022 13:08:48: #3 Call peaks... INFO @ Tue, 02 Aug 2022 13:08:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 13:08:49: 53000000 INFO @ Tue, 02 Aug 2022 13:08:54: 48000000 INFO @ Tue, 02 Aug 2022 13:08:55: 54000000 INFO @ Tue, 02 Aug 2022 13:09:01: 49000000 INFO @ Tue, 02 Aug 2022 13:09:01: 55000000 INFO @ Tue, 02 Aug 2022 13:09:07: 50000000 INFO @ Tue, 02 Aug 2022 13:09:08: 56000000 INFO @ Tue, 02 Aug 2022 13:09:13: 51000000 INFO @ Tue, 02 Aug 2022 13:09:14: 57000000 INFO @ Tue, 02 Aug 2022 13:09:20: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 13:09:21: 58000000 INFO @ Tue, 02 Aug 2022 13:09:25: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 13:09:27: 53000000 INFO @ Tue, 02 Aug 2022 13:09:28: 59000000 INFO @ Tue, 02 Aug 2022 13:09:33: 54000000 INFO @ Tue, 02 Aug 2022 13:09:35: 60000000 INFO @ Tue, 02 Aug 2022 13:09:40: 55000000 INFO @ Tue, 02 Aug 2022 13:09:42: 61000000 INFO @ Tue, 02 Aug 2022 13:09:45: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.05_peaks.xls INFO @ Tue, 02 Aug 2022 13:09:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 13:09:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.05_summits.bed INFO @ Tue, 02 Aug 2022 13:09:45: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (12340 records, 4 fields): 32 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 13:09:47: 56000000 INFO @ Tue, 02 Aug 2022 13:09:48: 62000000 INFO @ Tue, 02 Aug 2022 13:09:54: 57000000 INFO @ Tue, 02 Aug 2022 13:09:55: 63000000 INFO @ Tue, 02 Aug 2022 13:10:00: 58000000 INFO @ Tue, 02 Aug 2022 13:10:01: 64000000 INFO @ Tue, 02 Aug 2022 13:10:07: 59000000 INFO @ Tue, 02 Aug 2022 13:10:08: 65000000 INFO @ Tue, 02 Aug 2022 13:10:13: 60000000 INFO @ Tue, 02 Aug 2022 13:10:14: 66000000 INFO @ Tue, 02 Aug 2022 13:10:20: 61000000 INFO @ Tue, 02 Aug 2022 13:10:21: 67000000 INFO @ Tue, 02 Aug 2022 13:10:26: 62000000 INFO @ Tue, 02 Aug 2022 13:10:27: 68000000 INFO @ Tue, 02 Aug 2022 13:10:32: 63000000 INFO @ Tue, 02 Aug 2022 13:10:34: 69000000 INFO @ Tue, 02 Aug 2022 13:10:39: 64000000 INFO @ Tue, 02 Aug 2022 13:10:41: 70000000 INFO @ Tue, 02 Aug 2022 13:10:41: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 13:10:41: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 13:10:41: #1 total tags in treatment: 26591205 INFO @ Tue, 02 Aug 2022 13:10:41: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 13:10:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 13:10:42: #1 tags after filtering in treatment: 18310547 INFO @ Tue, 02 Aug 2022 13:10:42: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 13:10:42: #1 finished! INFO @ Tue, 02 Aug 2022 13:10:42: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 13:10:42: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 13:10:43: #2 number of paired peaks: 188 WARNING @ Tue, 02 Aug 2022 13:10:43: Fewer paired peaks (188) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 188 pairs to build model! INFO @ Tue, 02 Aug 2022 13:10:43: start model_add_line... INFO @ Tue, 02 Aug 2022 13:10:43: start X-correlation... INFO @ Tue, 02 Aug 2022 13:10:44: end of X-cor INFO @ Tue, 02 Aug 2022 13:10:44: #2 finished! INFO @ Tue, 02 Aug 2022 13:10:44: #2 predicted fragment length is 101 bps INFO @ Tue, 02 Aug 2022 13:10:44: #2 alternative fragment length(s) may be 4,85,101 bps INFO @ Tue, 02 Aug 2022 13:10:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.10_model.r INFO @ Tue, 02 Aug 2022 13:10:44: #3 Call peaks... INFO @ Tue, 02 Aug 2022 13:10:44: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 13:10:45: 65000000 INFO @ Tue, 02 Aug 2022 13:10:51: 66000000 INFO @ Tue, 02 Aug 2022 13:10:57: 67000000 INFO @ Tue, 02 Aug 2022 13:11:03: 68000000 INFO @ Tue, 02 Aug 2022 13:11:09: 69000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 13:11:15: 70000000 INFO @ Tue, 02 Aug 2022 13:11:16: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 13:11:16: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 13:11:16: #1 total tags in treatment: 26591205 INFO @ Tue, 02 Aug 2022 13:11:16: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 13:11:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 13:11:17: #1 tags after filtering in treatment: 18310547 INFO @ Tue, 02 Aug 2022 13:11:17: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 13:11:17: #1 finished! INFO @ Tue, 02 Aug 2022 13:11:17: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 13:11:17: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 13:11:17: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 13:11:18: #2 number of paired peaks: 188 WARNING @ Tue, 02 Aug 2022 13:11:18: Fewer paired peaks (188) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 188 pairs to build model! INFO @ Tue, 02 Aug 2022 13:11:18: start model_add_line... INFO @ Tue, 02 Aug 2022 13:11:18: start X-correlation... INFO @ Tue, 02 Aug 2022 13:11:18: end of X-cor INFO @ Tue, 02 Aug 2022 13:11:18: #2 finished! INFO @ Tue, 02 Aug 2022 13:11:18: #2 predicted fragment length is 101 bps INFO @ Tue, 02 Aug 2022 13:11:18: #2 alternative fragment length(s) may be 4,85,101 bps INFO @ Tue, 02 Aug 2022 13:11:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.20_model.r INFO @ Tue, 02 Aug 2022 13:11:18: #3 Call peaks... INFO @ Tue, 02 Aug 2022 13:11:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 13:11:34: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.10_peaks.xls INFO @ Tue, 02 Aug 2022 13:11:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 13:11:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.10_summits.bed INFO @ Tue, 02 Aug 2022 13:11:35: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (6716 records, 4 fields): 72 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 13:11:52: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 13:12:10: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.20_peaks.xls INFO @ Tue, 02 Aug 2022 13:12:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 13:12:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178873/SRX12178873.20_summits.bed INFO @ Tue, 02 Aug 2022 13:12:10: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (1634 records, 4 fields): 99 millis CompletedMACS2peakCalling