Job ID = 16436223 SRX = SRX12178869 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:08:52 prefetch.2.10.7: 1) Downloading 'SRR15888045'... 2022-08-02T02:08:52 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:13:09 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:13:09 prefetch.2.10.7: 1) 'SRR15888045' was downloaded successfully 2022-08-02T02:13:09 prefetch.2.10.7: 'SRR15888045' has 0 unresolved dependencies Read 61701005 spots for SRR15888045/SRR15888045.sra Written 61701005 spots for SRR15888045/SRR15888045.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437295 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:53:41 61701005 reads; of these: 61701005 (100.00%) were paired; of these: 31620647 (51.25%) aligned concordantly 0 times 25958802 (42.07%) aligned concordantly exactly 1 time 4121556 (6.68%) aligned concordantly >1 times ---- 31620647 pairs aligned concordantly 0 times; of these: 4703267 (14.87%) aligned discordantly 1 time ---- 26917380 pairs aligned 0 times concordantly or discordantly; of these: 53834760 mates make up the pairs; of these: 48833357 (90.71%) aligned 0 times 3712071 (6.90%) aligned exactly 1 time 1289332 (2.39%) aligned >1 times 60.43% overall alignment rate Time searching: 00:53:41 Overall time: 00:53:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 10239977 / 34594699 = 0.2960 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:35:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:35:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:35:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:36:01: 1000000 INFO @ Tue, 02 Aug 2022 12:36:10: 2000000 INFO @ Tue, 02 Aug 2022 12:36:19: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:36:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:36:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:36:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:36:29: 4000000 INFO @ Tue, 02 Aug 2022 12:36:31: 1000000 INFO @ Tue, 02 Aug 2022 12:36:38: 5000000 INFO @ Tue, 02 Aug 2022 12:36:40: 2000000 INFO @ Tue, 02 Aug 2022 12:36:47: 6000000 INFO @ Tue, 02 Aug 2022 12:36:47: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:36:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:36:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:36:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:36:56: 4000000 INFO @ Tue, 02 Aug 2022 12:36:57: 7000000 INFO @ Tue, 02 Aug 2022 12:37:03: 1000000 INFO @ Tue, 02 Aug 2022 12:37:04: 5000000 INFO @ Tue, 02 Aug 2022 12:37:07: 8000000 INFO @ Tue, 02 Aug 2022 12:37:12: 2000000 INFO @ Tue, 02 Aug 2022 12:37:13: 6000000 INFO @ Tue, 02 Aug 2022 12:37:16: 9000000 INFO @ Tue, 02 Aug 2022 12:37:22: 3000000 INFO @ Tue, 02 Aug 2022 12:37:22: 7000000 INFO @ Tue, 02 Aug 2022 12:37:26: 10000000 INFO @ Tue, 02 Aug 2022 12:37:30: 8000000 INFO @ Tue, 02 Aug 2022 12:37:31: 4000000 INFO @ Tue, 02 Aug 2022 12:37:36: 11000000 INFO @ Tue, 02 Aug 2022 12:37:39: 9000000 INFO @ Tue, 02 Aug 2022 12:37:41: 5000000 INFO @ Tue, 02 Aug 2022 12:37:45: 12000000 INFO @ Tue, 02 Aug 2022 12:37:48: 10000000 INFO @ Tue, 02 Aug 2022 12:37:50: 6000000 INFO @ Tue, 02 Aug 2022 12:37:55: 13000000 INFO @ Tue, 02 Aug 2022 12:37:56: 11000000 INFO @ Tue, 02 Aug 2022 12:37:59: 7000000 INFO @ Tue, 02 Aug 2022 12:38:05: 14000000 INFO @ Tue, 02 Aug 2022 12:38:05: 12000000 INFO @ Tue, 02 Aug 2022 12:38:09: 8000000 INFO @ Tue, 02 Aug 2022 12:38:14: 13000000 INFO @ Tue, 02 Aug 2022 12:38:14: 15000000 INFO @ Tue, 02 Aug 2022 12:38:19: 9000000 INFO @ Tue, 02 Aug 2022 12:38:22: 14000000 INFO @ Tue, 02 Aug 2022 12:38:24: 16000000 INFO @ Tue, 02 Aug 2022 12:38:29: 10000000 INFO @ Tue, 02 Aug 2022 12:38:30: 15000000 INFO @ Tue, 02 Aug 2022 12:38:34: 17000000 INFO @ Tue, 02 Aug 2022 12:38:38: 16000000 INFO @ Tue, 02 Aug 2022 12:38:39: 11000000 INFO @ Tue, 02 Aug 2022 12:38:43: 18000000 INFO @ Tue, 02 Aug 2022 12:38:46: 17000000 INFO @ Tue, 02 Aug 2022 12:38:49: 12000000 INFO @ Tue, 02 Aug 2022 12:38:53: 19000000 INFO @ Tue, 02 Aug 2022 12:38:55: 18000000 INFO @ Tue, 02 Aug 2022 12:38:58: 13000000 INFO @ Tue, 02 Aug 2022 12:39:02: 20000000 INFO @ Tue, 02 Aug 2022 12:39:03: 19000000 INFO @ Tue, 02 Aug 2022 12:39:07: 14000000 INFO @ Tue, 02 Aug 2022 12:39:11: 20000000 INFO @ Tue, 02 Aug 2022 12:39:11: 21000000 INFO @ Tue, 02 Aug 2022 12:39:17: 15000000 INFO @ Tue, 02 Aug 2022 12:39:20: 21000000 INFO @ Tue, 02 Aug 2022 12:39:21: 22000000 INFO @ Tue, 02 Aug 2022 12:39:26: 16000000 INFO @ Tue, 02 Aug 2022 12:39:28: 22000000 INFO @ Tue, 02 Aug 2022 12:39:30: 23000000 INFO @ Tue, 02 Aug 2022 12:39:36: 17000000 INFO @ Tue, 02 Aug 2022 12:39:37: 23000000 INFO @ Tue, 02 Aug 2022 12:39:39: 24000000 INFO @ Tue, 02 Aug 2022 12:39:45: 24000000 INFO @ Tue, 02 Aug 2022 12:39:45: 18000000 INFO @ Tue, 02 Aug 2022 12:39:49: 25000000 INFO @ Tue, 02 Aug 2022 12:39:52: 25000000 INFO @ Tue, 02 Aug 2022 12:39:54: 19000000 INFO @ Tue, 02 Aug 2022 12:39:58: 26000000 INFO @ Tue, 02 Aug 2022 12:40:00: 26000000 INFO @ Tue, 02 Aug 2022 12:40:04: 20000000 INFO @ Tue, 02 Aug 2022 12:40:08: 27000000 INFO @ Tue, 02 Aug 2022 12:40:09: 27000000 INFO @ Tue, 02 Aug 2022 12:40:13: 21000000 INFO @ Tue, 02 Aug 2022 12:40:17: 28000000 INFO @ Tue, 02 Aug 2022 12:40:17: 28000000 INFO @ Tue, 02 Aug 2022 12:40:23: 22000000 INFO @ Tue, 02 Aug 2022 12:40:25: 29000000 INFO @ Tue, 02 Aug 2022 12:40:26: 29000000 INFO @ Tue, 02 Aug 2022 12:40:32: 30000000 INFO @ Tue, 02 Aug 2022 12:40:33: 23000000 INFO @ Tue, 02 Aug 2022 12:40:36: 30000000 INFO @ Tue, 02 Aug 2022 12:40:39: 31000000 INFO @ Tue, 02 Aug 2022 12:40:43: 24000000 INFO @ Tue, 02 Aug 2022 12:40:45: 31000000 INFO @ Tue, 02 Aug 2022 12:40:46: 32000000 INFO @ Tue, 02 Aug 2022 12:40:53: 25000000 INFO @ Tue, 02 Aug 2022 12:40:54: 33000000 INFO @ Tue, 02 Aug 2022 12:40:55: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:41:02: 34000000 INFO @ Tue, 02 Aug 2022 12:41:02: 26000000 INFO @ Tue, 02 Aug 2022 12:41:05: 33000000 INFO @ Tue, 02 Aug 2022 12:41:12: 35000000 INFO @ Tue, 02 Aug 2022 12:41:12: 27000000 INFO @ Tue, 02 Aug 2022 12:41:15: 34000000 INFO @ Tue, 02 Aug 2022 12:41:20: 36000000 INFO @ Tue, 02 Aug 2022 12:41:21: 28000000 INFO @ Tue, 02 Aug 2022 12:41:24: 35000000 INFO @ Tue, 02 Aug 2022 12:41:29: 37000000 INFO @ Tue, 02 Aug 2022 12:41:30: 29000000 INFO @ Tue, 02 Aug 2022 12:41:33: 36000000 INFO @ Tue, 02 Aug 2022 12:41:37: 38000000 INFO @ Tue, 02 Aug 2022 12:41:39: 30000000 INFO @ Tue, 02 Aug 2022 12:41:42: 37000000 INFO @ Tue, 02 Aug 2022 12:41:45: 39000000 INFO @ Tue, 02 Aug 2022 12:41:49: 31000000 INFO @ Tue, 02 Aug 2022 12:41:51: 38000000 INFO @ Tue, 02 Aug 2022 12:41:52: 40000000 INFO @ Tue, 02 Aug 2022 12:41:58: 32000000 INFO @ Tue, 02 Aug 2022 12:42:00: 39000000 INFO @ Tue, 02 Aug 2022 12:42:00: 41000000 INFO @ Tue, 02 Aug 2022 12:42:07: 33000000 INFO @ Tue, 02 Aug 2022 12:42:07: 42000000 INFO @ Tue, 02 Aug 2022 12:42:08: 40000000 INFO @ Tue, 02 Aug 2022 12:42:15: 43000000 INFO @ Tue, 02 Aug 2022 12:42:16: 34000000 INFO @ Tue, 02 Aug 2022 12:42:17: 41000000 INFO @ Tue, 02 Aug 2022 12:42:22: 44000000 INFO @ Tue, 02 Aug 2022 12:42:24: 35000000 INFO @ Tue, 02 Aug 2022 12:42:26: 42000000 INFO @ Tue, 02 Aug 2022 12:42:29: 45000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:42:33: 36000000 INFO @ Tue, 02 Aug 2022 12:42:35: 43000000 INFO @ Tue, 02 Aug 2022 12:42:36: 46000000 INFO @ Tue, 02 Aug 2022 12:42:42: 37000000 INFO @ Tue, 02 Aug 2022 12:42:44: 44000000 INFO @ Tue, 02 Aug 2022 12:42:44: 47000000 INFO @ Tue, 02 Aug 2022 12:42:50: 38000000 INFO @ Tue, 02 Aug 2022 12:42:51: 48000000 INFO @ Tue, 02 Aug 2022 12:42:52: 45000000 INFO @ Tue, 02 Aug 2022 12:42:58: 49000000 INFO @ Tue, 02 Aug 2022 12:42:58: 39000000 INFO @ Tue, 02 Aug 2022 12:43:00: 46000000 INFO @ Tue, 02 Aug 2022 12:43:05: 50000000 INFO @ Tue, 02 Aug 2022 12:43:06: 40000000 INFO @ Tue, 02 Aug 2022 12:43:08: 47000000 INFO @ Tue, 02 Aug 2022 12:43:12: 51000000 INFO @ Tue, 02 Aug 2022 12:43:15: 41000000 INFO @ Tue, 02 Aug 2022 12:43:16: 48000000 INFO @ Tue, 02 Aug 2022 12:43:19: 52000000 INFO @ Tue, 02 Aug 2022 12:43:23: 42000000 INFO @ Tue, 02 Aug 2022 12:43:24: 49000000 INFO @ Tue, 02 Aug 2022 12:43:27: 53000000 INFO @ Tue, 02 Aug 2022 12:43:31: 43000000 INFO @ Tue, 02 Aug 2022 12:43:32: 50000000 INFO @ Tue, 02 Aug 2022 12:43:34: 54000000 INFO @ Tue, 02 Aug 2022 12:43:35: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:43:35: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:43:35: #1 total tags in treatment: 20916618 INFO @ Tue, 02 Aug 2022 12:43:35: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:43:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:43:35: #1 tags after filtering in treatment: 14156907 INFO @ Tue, 02 Aug 2022 12:43:35: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:43:35: #1 finished! INFO @ Tue, 02 Aug 2022 12:43:35: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:43:35: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:43:36: #2 number of paired peaks: 1189 INFO @ Tue, 02 Aug 2022 12:43:36: start model_add_line... INFO @ Tue, 02 Aug 2022 12:43:36: start X-correlation... INFO @ Tue, 02 Aug 2022 12:43:36: end of X-cor INFO @ Tue, 02 Aug 2022 12:43:36: #2 finished! INFO @ Tue, 02 Aug 2022 12:43:36: #2 predicted fragment length is 55 bps INFO @ Tue, 02 Aug 2022 12:43:36: #2 alternative fragment length(s) may be 4,55 bps INFO @ Tue, 02 Aug 2022 12:43:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.10_model.r WARNING @ Tue, 02 Aug 2022 12:43:37: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:43:37: #2 You may need to consider one of the other alternative d(s): 4,55 WARNING @ Tue, 02 Aug 2022 12:43:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:43:37: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:43:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:43:39: 44000000 INFO @ Tue, 02 Aug 2022 12:43:40: 51000000 INFO @ Tue, 02 Aug 2022 12:43:47: 45000000 INFO @ Tue, 02 Aug 2022 12:43:48: 52000000 INFO @ Tue, 02 Aug 2022 12:43:55: 46000000 INFO @ Tue, 02 Aug 2022 12:43:56: 53000000 INFO @ Tue, 02 Aug 2022 12:44:03: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:44:03: 47000000 INFO @ Tue, 02 Aug 2022 12:44:04: 54000000 INFO @ Tue, 02 Aug 2022 12:44:04: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:44:04: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:44:04: #1 total tags in treatment: 20916618 INFO @ Tue, 02 Aug 2022 12:44:04: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:44:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:44:05: #1 tags after filtering in treatment: 14156907 INFO @ Tue, 02 Aug 2022 12:44:05: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:44:05: #1 finished! INFO @ Tue, 02 Aug 2022 12:44:05: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:44:05: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:44:06: #2 number of paired peaks: 1189 INFO @ Tue, 02 Aug 2022 12:44:06: start model_add_line... INFO @ Tue, 02 Aug 2022 12:44:06: start X-correlation... INFO @ Tue, 02 Aug 2022 12:44:06: end of X-cor INFO @ Tue, 02 Aug 2022 12:44:06: #2 finished! INFO @ Tue, 02 Aug 2022 12:44:06: #2 predicted fragment length is 55 bps INFO @ Tue, 02 Aug 2022 12:44:06: #2 alternative fragment length(s) may be 4,55 bps INFO @ Tue, 02 Aug 2022 12:44:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.05_model.r WARNING @ Tue, 02 Aug 2022 12:44:06: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:44:06: #2 You may need to consider one of the other alternative d(s): 4,55 WARNING @ Tue, 02 Aug 2022 12:44:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:44:06: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:44:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:44:10: 48000000 INFO @ Tue, 02 Aug 2022 12:44:16: 49000000 INFO @ Tue, 02 Aug 2022 12:44:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:44:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:44:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.10_summits.bed INFO @ Tue, 02 Aug 2022 12:44:18: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (9940 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:44:23: 50000000 INFO @ Tue, 02 Aug 2022 12:44:29: 51000000 INFO @ Tue, 02 Aug 2022 12:44:34: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:44:36: 52000000 INFO @ Tue, 02 Aug 2022 12:44:43: 53000000 INFO @ Tue, 02 Aug 2022 12:44:50: 54000000 INFO @ Tue, 02 Aug 2022 12:44:50: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:44:50: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:44:50: #1 total tags in treatment: 20916618 INFO @ Tue, 02 Aug 2022 12:44:50: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:44:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:44:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:44:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:44:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.05_summits.bed INFO @ Tue, 02 Aug 2022 12:44:51: #1 tags after filtering in treatment: 14156907 INFO @ Tue, 02 Aug 2022 12:44:51: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 12:44:51: #1 finished! INFO @ Tue, 02 Aug 2022 12:44:51: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:44:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:44:51: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (18924 records, 4 fields): 81 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:44:52: #2 number of paired peaks: 1189 INFO @ Tue, 02 Aug 2022 12:44:52: start model_add_line... INFO @ Tue, 02 Aug 2022 12:44:52: start X-correlation... INFO @ Tue, 02 Aug 2022 12:44:52: end of X-cor INFO @ Tue, 02 Aug 2022 12:44:52: #2 finished! INFO @ Tue, 02 Aug 2022 12:44:52: #2 predicted fragment length is 55 bps INFO @ Tue, 02 Aug 2022 12:44:52: #2 alternative fragment length(s) may be 4,55 bps INFO @ Tue, 02 Aug 2022 12:44:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.20_model.r WARNING @ Tue, 02 Aug 2022 12:44:52: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:44:52: #2 You may need to consider one of the other alternative d(s): 4,55 WARNING @ Tue, 02 Aug 2022 12:44:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:44:52: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:44:52: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:45:18: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:45:32: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:45:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:45:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178869/SRX12178869.20_summits.bed INFO @ Tue, 02 Aug 2022 12:45:32: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1592 records, 4 fields): 283 millis CompletedMACS2peakCalling