Job ID = 16436200 SRX = SRX12178853 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:05:13 prefetch.2.10.7: 1) Downloading 'SRR15888061'... 2022-08-02T02:05:13 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:06:59 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:06:59 prefetch.2.10.7: 1) 'SRR15888061' was downloaded successfully 2022-08-02T02:06:59 prefetch.2.10.7: 'SRR15888061' has 0 unresolved dependencies Read 35381291 spots for SRR15888061/SRR15888061.sra Written 35381291 spots for SRR15888061/SRR15888061.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436818 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:38:01 35381291 reads; of these: 35381291 (100.00%) were paired; of these: 10736650 (30.35%) aligned concordantly 0 times 19205519 (54.28%) aligned concordantly exactly 1 time 5439122 (15.37%) aligned concordantly >1 times ---- 10736650 pairs aligned concordantly 0 times; of these: 3666911 (34.15%) aligned discordantly 1 time ---- 7069739 pairs aligned 0 times concordantly or discordantly; of these: 14139478 mates make up the pairs; of these: 9596100 (67.87%) aligned 0 times 2912054 (20.60%) aligned exactly 1 time 1631324 (11.54%) aligned >1 times 86.44% overall alignment rate Time searching: 00:38:01 Overall time: 00:38:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5937732 / 28201648 = 0.2105 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:02:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:02:01: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:02:01: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:02:06: 1000000 INFO @ Tue, 02 Aug 2022 12:02:11: 2000000 INFO @ Tue, 02 Aug 2022 12:02:15: 3000000 INFO @ Tue, 02 Aug 2022 12:02:20: 4000000 INFO @ Tue, 02 Aug 2022 12:02:25: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:02:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:02:30: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:02:30: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:02:30: 6000000 INFO @ Tue, 02 Aug 2022 12:02:35: 1000000 INFO @ Tue, 02 Aug 2022 12:02:35: 7000000 INFO @ Tue, 02 Aug 2022 12:02:40: 2000000 INFO @ Tue, 02 Aug 2022 12:02:40: 8000000 INFO @ Tue, 02 Aug 2022 12:02:45: 3000000 INFO @ Tue, 02 Aug 2022 12:02:45: 9000000 INFO @ Tue, 02 Aug 2022 12:02:50: 4000000 INFO @ Tue, 02 Aug 2022 12:02:51: 10000000 INFO @ Tue, 02 Aug 2022 12:02:55: 5000000 INFO @ Tue, 02 Aug 2022 12:02:56: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:02:59: 6000000 INFO @ Tue, 02 Aug 2022 12:03:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:03:00: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:03:00: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:03:01: 12000000 INFO @ Tue, 02 Aug 2022 12:03:04: 7000000 INFO @ Tue, 02 Aug 2022 12:03:05: 1000000 INFO @ Tue, 02 Aug 2022 12:03:06: 13000000 INFO @ Tue, 02 Aug 2022 12:03:10: 8000000 INFO @ Tue, 02 Aug 2022 12:03:10: 2000000 INFO @ Tue, 02 Aug 2022 12:03:11: 14000000 INFO @ Tue, 02 Aug 2022 12:03:15: 9000000 INFO @ Tue, 02 Aug 2022 12:03:15: 3000000 INFO @ Tue, 02 Aug 2022 12:03:16: 15000000 INFO @ Tue, 02 Aug 2022 12:03:20: 10000000 INFO @ Tue, 02 Aug 2022 12:03:21: 4000000 INFO @ Tue, 02 Aug 2022 12:03:21: 16000000 INFO @ Tue, 02 Aug 2022 12:03:25: 11000000 INFO @ Tue, 02 Aug 2022 12:03:26: 5000000 INFO @ Tue, 02 Aug 2022 12:03:27: 17000000 INFO @ Tue, 02 Aug 2022 12:03:31: 12000000 INFO @ Tue, 02 Aug 2022 12:03:31: 6000000 INFO @ Tue, 02 Aug 2022 12:03:32: 18000000 INFO @ Tue, 02 Aug 2022 12:03:36: 13000000 INFO @ Tue, 02 Aug 2022 12:03:36: 7000000 INFO @ Tue, 02 Aug 2022 12:03:37: 19000000 INFO @ Tue, 02 Aug 2022 12:03:41: 14000000 INFO @ Tue, 02 Aug 2022 12:03:41: 8000000 INFO @ Tue, 02 Aug 2022 12:03:42: 20000000 INFO @ Tue, 02 Aug 2022 12:03:46: 15000000 INFO @ Tue, 02 Aug 2022 12:03:47: 9000000 INFO @ Tue, 02 Aug 2022 12:03:47: 21000000 INFO @ Tue, 02 Aug 2022 12:03:52: 16000000 INFO @ Tue, 02 Aug 2022 12:03:52: 10000000 INFO @ Tue, 02 Aug 2022 12:03:53: 22000000 INFO @ Tue, 02 Aug 2022 12:03:57: 17000000 INFO @ Tue, 02 Aug 2022 12:03:57: 11000000 INFO @ Tue, 02 Aug 2022 12:03:58: 23000000 INFO @ Tue, 02 Aug 2022 12:04:02: 18000000 INFO @ Tue, 02 Aug 2022 12:04:02: 12000000 INFO @ Tue, 02 Aug 2022 12:04:03: 24000000 INFO @ Tue, 02 Aug 2022 12:04:07: 13000000 INFO @ Tue, 02 Aug 2022 12:04:08: 19000000 INFO @ Tue, 02 Aug 2022 12:04:08: 25000000 INFO @ Tue, 02 Aug 2022 12:04:13: 14000000 INFO @ Tue, 02 Aug 2022 12:04:13: 26000000 INFO @ Tue, 02 Aug 2022 12:04:13: 20000000 INFO @ Tue, 02 Aug 2022 12:04:18: 15000000 INFO @ Tue, 02 Aug 2022 12:04:18: 27000000 INFO @ Tue, 02 Aug 2022 12:04:18: 21000000 INFO @ Tue, 02 Aug 2022 12:04:23: 16000000 INFO @ Tue, 02 Aug 2022 12:04:23: 28000000 INFO @ Tue, 02 Aug 2022 12:04:23: 22000000 INFO @ Tue, 02 Aug 2022 12:04:28: 17000000 INFO @ Tue, 02 Aug 2022 12:04:28: 29000000 INFO @ Tue, 02 Aug 2022 12:04:28: 23000000 INFO @ Tue, 02 Aug 2022 12:04:33: 30000000 INFO @ Tue, 02 Aug 2022 12:04:33: 18000000 INFO @ Tue, 02 Aug 2022 12:04:33: 24000000 INFO @ Tue, 02 Aug 2022 12:04:38: 31000000 INFO @ Tue, 02 Aug 2022 12:04:39: 25000000 INFO @ Tue, 02 Aug 2022 12:04:39: 19000000 INFO @ Tue, 02 Aug 2022 12:04:43: 32000000 INFO @ Tue, 02 Aug 2022 12:04:44: 26000000 INFO @ Tue, 02 Aug 2022 12:04:44: 20000000 INFO @ Tue, 02 Aug 2022 12:04:48: 33000000 INFO @ Tue, 02 Aug 2022 12:04:49: 27000000 INFO @ Tue, 02 Aug 2022 12:04:49: 21000000 INFO @ Tue, 02 Aug 2022 12:04:54: 34000000 INFO @ Tue, 02 Aug 2022 12:04:54: 28000000 INFO @ Tue, 02 Aug 2022 12:04:55: 22000000 INFO @ Tue, 02 Aug 2022 12:04:59: 35000000 INFO @ Tue, 02 Aug 2022 12:04:59: 29000000 INFO @ Tue, 02 Aug 2022 12:05:00: 23000000 INFO @ Tue, 02 Aug 2022 12:05:04: 36000000 INFO @ Tue, 02 Aug 2022 12:05:04: 30000000 INFO @ Tue, 02 Aug 2022 12:05:05: 24000000 INFO @ Tue, 02 Aug 2022 12:05:09: 37000000 INFO @ Tue, 02 Aug 2022 12:05:09: 31000000 INFO @ Tue, 02 Aug 2022 12:05:10: 25000000 INFO @ Tue, 02 Aug 2022 12:05:14: 38000000 INFO @ Tue, 02 Aug 2022 12:05:15: 32000000 INFO @ Tue, 02 Aug 2022 12:05:16: 26000000 INFO @ Tue, 02 Aug 2022 12:05:19: 39000000 INFO @ Tue, 02 Aug 2022 12:05:20: 33000000 INFO @ Tue, 02 Aug 2022 12:05:21: 27000000 INFO @ Tue, 02 Aug 2022 12:05:24: 40000000 INFO @ Tue, 02 Aug 2022 12:05:25: 34000000 INFO @ Tue, 02 Aug 2022 12:05:26: 28000000 INFO @ Tue, 02 Aug 2022 12:05:30: 41000000 INFO @ Tue, 02 Aug 2022 12:05:30: 35000000 INFO @ Tue, 02 Aug 2022 12:05:31: 29000000 INFO @ Tue, 02 Aug 2022 12:05:35: 42000000 INFO @ Tue, 02 Aug 2022 12:05:35: 36000000 INFO @ Tue, 02 Aug 2022 12:05:36: 30000000 INFO @ Tue, 02 Aug 2022 12:05:40: 43000000 INFO @ Tue, 02 Aug 2022 12:05:40: 37000000 INFO @ Tue, 02 Aug 2022 12:05:41: 31000000 INFO @ Tue, 02 Aug 2022 12:05:45: 44000000 INFO @ Tue, 02 Aug 2022 12:05:45: 38000000 INFO @ Tue, 02 Aug 2022 12:05:46: 32000000 INFO @ Tue, 02 Aug 2022 12:05:50: 45000000 INFO @ Tue, 02 Aug 2022 12:05:50: 39000000 INFO @ Tue, 02 Aug 2022 12:05:51: 33000000 INFO @ Tue, 02 Aug 2022 12:05:55: 46000000 INFO @ Tue, 02 Aug 2022 12:05:55: 40000000 INFO @ Tue, 02 Aug 2022 12:05:56: 34000000 INFO @ Tue, 02 Aug 2022 12:06:00: 47000000 INFO @ Tue, 02 Aug 2022 12:06:01: 41000000 INFO @ Tue, 02 Aug 2022 12:06:01: 35000000 INFO @ Tue, 02 Aug 2022 12:06:05: 48000000 INFO @ Tue, 02 Aug 2022 12:06:06: 42000000 INFO @ Tue, 02 Aug 2022 12:06:07: 36000000 INFO @ Tue, 02 Aug 2022 12:06:11: 49000000 INFO @ Tue, 02 Aug 2022 12:06:11: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:06:12: 37000000 INFO @ Tue, 02 Aug 2022 12:06:12: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:06:12: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:06:12: #1 total tags in treatment: 19223230 INFO @ Tue, 02 Aug 2022 12:06:12: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:06:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:06:13: #1 tags after filtering in treatment: 14366875 INFO @ Tue, 02 Aug 2022 12:06:13: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 02 Aug 2022 12:06:13: #1 finished! INFO @ Tue, 02 Aug 2022 12:06:13: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:06:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:06:14: #2 number of paired peaks: 290 WARNING @ Tue, 02 Aug 2022 12:06:14: Fewer paired peaks (290) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 290 pairs to build model! INFO @ Tue, 02 Aug 2022 12:06:14: start model_add_line... INFO @ Tue, 02 Aug 2022 12:06:14: start X-correlation... INFO @ Tue, 02 Aug 2022 12:06:14: end of X-cor INFO @ Tue, 02 Aug 2022 12:06:14: #2 finished! INFO @ Tue, 02 Aug 2022 12:06:14: #2 predicted fragment length is 69 bps INFO @ Tue, 02 Aug 2022 12:06:14: #2 alternative fragment length(s) may be 4,69 bps INFO @ Tue, 02 Aug 2022 12:06:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.05_model.r WARNING @ Tue, 02 Aug 2022 12:06:14: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:06:14: #2 You may need to consider one of the other alternative d(s): 4,69 WARNING @ Tue, 02 Aug 2022 12:06:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:06:14: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:06:14: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:06:16: 44000000 INFO @ Tue, 02 Aug 2022 12:06:17: 38000000 INFO @ Tue, 02 Aug 2022 12:06:20: 45000000 INFO @ Tue, 02 Aug 2022 12:06:22: 39000000 INFO @ Tue, 02 Aug 2022 12:06:25: 46000000 INFO @ Tue, 02 Aug 2022 12:06:28: 40000000 INFO @ Tue, 02 Aug 2022 12:06:30: 47000000 INFO @ Tue, 02 Aug 2022 12:06:33: 41000000 INFO @ Tue, 02 Aug 2022 12:06:35: 48000000 INFO @ Tue, 02 Aug 2022 12:06:38: 42000000 INFO @ Tue, 02 Aug 2022 12:06:40: 49000000 INFO @ Tue, 02 Aug 2022 12:06:41: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:06:41: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:06:41: #1 total tags in treatment: 19223230 INFO @ Tue, 02 Aug 2022 12:06:41: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:06:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:06:42: #1 tags after filtering in treatment: 14366875 INFO @ Tue, 02 Aug 2022 12:06:42: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 02 Aug 2022 12:06:42: #1 finished! INFO @ Tue, 02 Aug 2022 12:06:42: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:06:42: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:06:43: #2 number of paired peaks: 290 WARNING @ Tue, 02 Aug 2022 12:06:43: Fewer paired peaks (290) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 290 pairs to build model! INFO @ Tue, 02 Aug 2022 12:06:43: start model_add_line... INFO @ Tue, 02 Aug 2022 12:06:43: 43000000 INFO @ Tue, 02 Aug 2022 12:06:43: start X-correlation... INFO @ Tue, 02 Aug 2022 12:06:43: end of X-cor INFO @ Tue, 02 Aug 2022 12:06:43: #2 finished! INFO @ Tue, 02 Aug 2022 12:06:43: #2 predicted fragment length is 69 bps INFO @ Tue, 02 Aug 2022 12:06:43: #2 alternative fragment length(s) may be 4,69 bps INFO @ Tue, 02 Aug 2022 12:06:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.10_model.r WARNING @ Tue, 02 Aug 2022 12:06:43: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:06:43: #2 You may need to consider one of the other alternative d(s): 4,69 WARNING @ Tue, 02 Aug 2022 12:06:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:06:43: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:06:43: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:06:45: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:06:48: 44000000 INFO @ Tue, 02 Aug 2022 12:06:52: 45000000 INFO @ Tue, 02 Aug 2022 12:06:57: 46000000 INFO @ Tue, 02 Aug 2022 12:07:02: 47000000 INFO @ Tue, 02 Aug 2022 12:07:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.05_summits.bed INFO @ Tue, 02 Aug 2022 12:07:02: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (12768 records, 4 fields): 54 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:07:07: 48000000 INFO @ Tue, 02 Aug 2022 12:07:11: 49000000 INFO @ Tue, 02 Aug 2022 12:07:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:07:13: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:07:13: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:07:13: #1 total tags in treatment: 19223230 INFO @ Tue, 02 Aug 2022 12:07:13: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:07:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:07:13: #1 tags after filtering in treatment: 14366875 INFO @ Tue, 02 Aug 2022 12:07:13: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 02 Aug 2022 12:07:13: #1 finished! INFO @ Tue, 02 Aug 2022 12:07:13: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:07:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:07:14: #2 number of paired peaks: 290 WARNING @ Tue, 02 Aug 2022 12:07:14: Fewer paired peaks (290) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 290 pairs to build model! INFO @ Tue, 02 Aug 2022 12:07:14: start model_add_line... INFO @ Tue, 02 Aug 2022 12:07:15: start X-correlation... INFO @ Tue, 02 Aug 2022 12:07:15: end of X-cor INFO @ Tue, 02 Aug 2022 12:07:15: #2 finished! INFO @ Tue, 02 Aug 2022 12:07:15: #2 predicted fragment length is 69 bps INFO @ Tue, 02 Aug 2022 12:07:15: #2 alternative fragment length(s) may be 4,69 bps INFO @ Tue, 02 Aug 2022 12:07:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.20_model.r WARNING @ Tue, 02 Aug 2022 12:07:15: #2 Since the d (69) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:07:15: #2 You may need to consider one of the other alternative d(s): 4,69 WARNING @ Tue, 02 Aug 2022 12:07:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:07:15: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:07:15: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:07:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.10_summits.bed INFO @ Tue, 02 Aug 2022 12:07:27: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (5559 records, 4 fields): 56 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:07:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:07:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178853/SRX12178853.20_summits.bed INFO @ Tue, 02 Aug 2022 12:07:59: Done! pass1 - making usageList (12 chroms): 2 millis pass2 - checking and writing primary data (732 records, 4 fields): 32 millis CompletedMACS2peakCalling