Job ID = 16440268 SRX = SRX12178843 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:41:08 prefetch.2.10.7: 1) Downloading 'SRR15888071'... 2022-08-02T08:41:08 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:43:06 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:43:06 prefetch.2.10.7: 1) 'SRR15888071' was downloaded successfully 2022-08-02T08:43:06 prefetch.2.10.7: 'SRR15888071' has 0 unresolved dependencies Read 33569372 spots for SRR15888071/SRR15888071.sra Written 33569372 spots for SRR15888071/SRR15888071.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441083 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:41:55 33569372 reads; of these: 33569372 (100.00%) were paired; of these: 9811270 (29.23%) aligned concordantly 0 times 21175770 (63.08%) aligned concordantly exactly 1 time 2582332 (7.69%) aligned concordantly >1 times ---- 9811270 pairs aligned concordantly 0 times; of these: 4082238 (41.61%) aligned discordantly 1 time ---- 5729032 pairs aligned 0 times concordantly or discordantly; of these: 11458064 mates make up the pairs; of these: 7001531 (61.11%) aligned 0 times 3375843 (29.46%) aligned exactly 1 time 1080690 (9.43%) aligned >1 times 89.57% overall alignment rate Time searching: 00:41:55 Overall time: 00:41:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4904071 / 27766267 = 0.1766 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:46:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:46:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:46:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:46:32: 1000000 INFO @ Tue, 02 Aug 2022 18:46:40: 2000000 INFO @ Tue, 02 Aug 2022 18:46:48: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:46:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:46:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:46:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:46:56: 4000000 INFO @ Tue, 02 Aug 2022 18:47:01: 1000000 INFO @ Tue, 02 Aug 2022 18:47:04: 5000000 INFO @ Tue, 02 Aug 2022 18:47:10: 2000000 INFO @ Tue, 02 Aug 2022 18:47:12: 6000000 INFO @ Tue, 02 Aug 2022 18:47:18: 3000000 INFO @ Tue, 02 Aug 2022 18:47:21: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:47:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:47:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:47:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:47:26: 4000000 INFO @ Tue, 02 Aug 2022 18:47:29: 8000000 INFO @ Tue, 02 Aug 2022 18:47:33: 1000000 INFO @ Tue, 02 Aug 2022 18:47:34: 5000000 INFO @ Tue, 02 Aug 2022 18:47:38: 9000000 INFO @ Tue, 02 Aug 2022 18:47:43: 2000000 INFO @ Tue, 02 Aug 2022 18:47:43: 6000000 INFO @ Tue, 02 Aug 2022 18:47:46: 10000000 INFO @ Tue, 02 Aug 2022 18:47:51: 7000000 INFO @ Tue, 02 Aug 2022 18:47:52: 3000000 INFO @ Tue, 02 Aug 2022 18:47:55: 11000000 INFO @ Tue, 02 Aug 2022 18:47:59: 8000000 INFO @ Tue, 02 Aug 2022 18:48:02: 4000000 INFO @ Tue, 02 Aug 2022 18:48:03: 12000000 INFO @ Tue, 02 Aug 2022 18:48:08: 9000000 INFO @ Tue, 02 Aug 2022 18:48:11: 5000000 INFO @ Tue, 02 Aug 2022 18:48:13: 13000000 INFO @ Tue, 02 Aug 2022 18:48:17: 10000000 INFO @ Tue, 02 Aug 2022 18:48:21: 6000000 INFO @ Tue, 02 Aug 2022 18:48:21: 14000000 INFO @ Tue, 02 Aug 2022 18:48:25: 11000000 INFO @ Tue, 02 Aug 2022 18:48:30: 15000000 INFO @ Tue, 02 Aug 2022 18:48:30: 7000000 INFO @ Tue, 02 Aug 2022 18:48:34: 12000000 INFO @ Tue, 02 Aug 2022 18:48:38: 16000000 INFO @ Tue, 02 Aug 2022 18:48:40: 8000000 INFO @ Tue, 02 Aug 2022 18:48:42: 13000000 INFO @ Tue, 02 Aug 2022 18:48:47: 17000000 INFO @ Tue, 02 Aug 2022 18:48:49: 9000000 INFO @ Tue, 02 Aug 2022 18:48:51: 14000000 INFO @ Tue, 02 Aug 2022 18:48:55: 18000000 INFO @ Tue, 02 Aug 2022 18:48:59: 10000000 INFO @ Tue, 02 Aug 2022 18:48:59: 15000000 INFO @ Tue, 02 Aug 2022 18:49:04: 19000000 INFO @ Tue, 02 Aug 2022 18:49:08: 16000000 INFO @ Tue, 02 Aug 2022 18:49:09: 11000000 INFO @ Tue, 02 Aug 2022 18:49:12: 20000000 INFO @ Tue, 02 Aug 2022 18:49:16: 17000000 INFO @ Tue, 02 Aug 2022 18:49:18: 12000000 INFO @ Tue, 02 Aug 2022 18:49:21: 21000000 INFO @ Tue, 02 Aug 2022 18:49:25: 18000000 INFO @ Tue, 02 Aug 2022 18:49:27: 13000000 INFO @ Tue, 02 Aug 2022 18:49:29: 22000000 INFO @ Tue, 02 Aug 2022 18:49:33: 19000000 INFO @ Tue, 02 Aug 2022 18:49:36: 14000000 INFO @ Tue, 02 Aug 2022 18:49:37: 23000000 INFO @ Tue, 02 Aug 2022 18:49:41: 20000000 INFO @ Tue, 02 Aug 2022 18:49:44: 15000000 INFO @ Tue, 02 Aug 2022 18:49:45: 24000000 INFO @ Tue, 02 Aug 2022 18:49:49: 21000000 INFO @ Tue, 02 Aug 2022 18:49:53: 16000000 INFO @ Tue, 02 Aug 2022 18:49:53: 25000000 INFO @ Tue, 02 Aug 2022 18:49:57: 22000000 INFO @ Tue, 02 Aug 2022 18:50:01: 26000000 INFO @ Tue, 02 Aug 2022 18:50:02: 17000000 INFO @ Tue, 02 Aug 2022 18:50:06: 23000000 INFO @ Tue, 02 Aug 2022 18:50:09: 27000000 INFO @ Tue, 02 Aug 2022 18:50:10: 18000000 INFO @ Tue, 02 Aug 2022 18:50:14: 24000000 INFO @ Tue, 02 Aug 2022 18:50:17: 28000000 INFO @ Tue, 02 Aug 2022 18:50:18: 19000000 INFO @ Tue, 02 Aug 2022 18:50:22: 25000000 INFO @ Tue, 02 Aug 2022 18:50:25: 29000000 INFO @ Tue, 02 Aug 2022 18:50:26: 20000000 INFO @ Tue, 02 Aug 2022 18:50:30: 26000000 INFO @ Tue, 02 Aug 2022 18:50:32: 30000000 INFO @ Tue, 02 Aug 2022 18:50:34: 21000000 INFO @ Tue, 02 Aug 2022 18:50:38: 27000000 INFO @ Tue, 02 Aug 2022 18:50:40: 31000000 INFO @ Tue, 02 Aug 2022 18:50:42: 22000000 INFO @ Tue, 02 Aug 2022 18:50:46: 28000000 INFO @ Tue, 02 Aug 2022 18:50:48: 32000000 INFO @ Tue, 02 Aug 2022 18:50:50: 23000000 INFO @ Tue, 02 Aug 2022 18:50:55: 29000000 INFO @ Tue, 02 Aug 2022 18:50:55: 33000000 INFO @ Tue, 02 Aug 2022 18:50:57: 24000000 INFO @ Tue, 02 Aug 2022 18:51:02: 30000000 INFO @ Tue, 02 Aug 2022 18:51:03: 34000000 INFO @ Tue, 02 Aug 2022 18:51:05: 25000000 INFO @ Tue, 02 Aug 2022 18:51:10: 31000000 INFO @ Tue, 02 Aug 2022 18:51:11: 35000000 INFO @ Tue, 02 Aug 2022 18:51:12: 26000000 INFO @ Tue, 02 Aug 2022 18:51:18: 32000000 INFO @ Tue, 02 Aug 2022 18:51:19: 36000000 INFO @ Tue, 02 Aug 2022 18:51:20: 27000000 INFO @ Tue, 02 Aug 2022 18:51:26: 33000000 INFO @ Tue, 02 Aug 2022 18:51:26: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:51:28: 28000000 INFO @ Tue, 02 Aug 2022 18:51:34: 34000000 INFO @ Tue, 02 Aug 2022 18:51:34: 38000000 INFO @ Tue, 02 Aug 2022 18:51:35: 29000000 INFO @ Tue, 02 Aug 2022 18:51:42: 35000000 INFO @ Tue, 02 Aug 2022 18:51:42: 39000000 INFO @ Tue, 02 Aug 2022 18:51:43: 30000000 INFO @ Tue, 02 Aug 2022 18:51:49: 36000000 INFO @ Tue, 02 Aug 2022 18:51:50: 40000000 INFO @ Tue, 02 Aug 2022 18:51:50: 31000000 INFO @ Tue, 02 Aug 2022 18:51:57: 37000000 INFO @ Tue, 02 Aug 2022 18:51:57: 41000000 INFO @ Tue, 02 Aug 2022 18:51:58: 32000000 INFO @ Tue, 02 Aug 2022 18:52:05: 38000000 INFO @ Tue, 02 Aug 2022 18:52:05: 42000000 INFO @ Tue, 02 Aug 2022 18:52:05: 33000000 INFO @ Tue, 02 Aug 2022 18:52:12: 39000000 INFO @ Tue, 02 Aug 2022 18:52:13: 43000000 INFO @ Tue, 02 Aug 2022 18:52:13: 34000000 INFO @ Tue, 02 Aug 2022 18:52:20: 40000000 INFO @ Tue, 02 Aug 2022 18:52:21: 35000000 INFO @ Tue, 02 Aug 2022 18:52:21: 44000000 INFO @ Tue, 02 Aug 2022 18:52:28: 41000000 INFO @ Tue, 02 Aug 2022 18:52:28: 36000000 INFO @ Tue, 02 Aug 2022 18:52:29: 45000000 INFO @ Tue, 02 Aug 2022 18:52:36: 42000000 INFO @ Tue, 02 Aug 2022 18:52:36: 37000000 INFO @ Tue, 02 Aug 2022 18:52:36: 46000000 INFO @ Tue, 02 Aug 2022 18:52:43: 43000000 INFO @ Tue, 02 Aug 2022 18:52:43: 38000000 INFO @ Tue, 02 Aug 2022 18:52:44: 47000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:52:51: 39000000 INFO @ Tue, 02 Aug 2022 18:52:51: 44000000 INFO @ Tue, 02 Aug 2022 18:52:52: 48000000 INFO @ Tue, 02 Aug 2022 18:52:59: 40000000 INFO @ Tue, 02 Aug 2022 18:52:59: 45000000 INFO @ Tue, 02 Aug 2022 18:53:00: 49000000 INFO @ Tue, 02 Aug 2022 18:53:06: 41000000 INFO @ Tue, 02 Aug 2022 18:53:07: 46000000 INFO @ Tue, 02 Aug 2022 18:53:07: 50000000 INFO @ Tue, 02 Aug 2022 18:53:10: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:53:10: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:53:10: #1 total tags in treatment: 19344003 INFO @ Tue, 02 Aug 2022 18:53:10: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:53:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:53:11: #1 tags after filtering in treatment: 12845276 INFO @ Tue, 02 Aug 2022 18:53:11: #1 Redundant rate of treatment: 0.34 INFO @ Tue, 02 Aug 2022 18:53:11: #1 finished! INFO @ Tue, 02 Aug 2022 18:53:11: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:53:11: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:53:12: #2 number of paired peaks: 1961 INFO @ Tue, 02 Aug 2022 18:53:12: start model_add_line... INFO @ Tue, 02 Aug 2022 18:53:12: start X-correlation... INFO @ Tue, 02 Aug 2022 18:53:12: end of X-cor INFO @ Tue, 02 Aug 2022 18:53:12: #2 finished! INFO @ Tue, 02 Aug 2022 18:53:12: #2 predicted fragment length is 67 bps INFO @ Tue, 02 Aug 2022 18:53:12: #2 alternative fragment length(s) may be 4,67 bps INFO @ Tue, 02 Aug 2022 18:53:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.05_model.r WARNING @ Tue, 02 Aug 2022 18:53:12: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:53:12: #2 You may need to consider one of the other alternative d(s): 4,67 WARNING @ Tue, 02 Aug 2022 18:53:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:53:12: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:53:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:53:14: 47000000 INFO @ Tue, 02 Aug 2022 18:53:14: 42000000 INFO @ Tue, 02 Aug 2022 18:53:21: 48000000 INFO @ Tue, 02 Aug 2022 18:53:22: 43000000 INFO @ Tue, 02 Aug 2022 18:53:28: 49000000 INFO @ Tue, 02 Aug 2022 18:53:30: 44000000 INFO @ Tue, 02 Aug 2022 18:53:35: 50000000 INFO @ Tue, 02 Aug 2022 18:53:38: 45000000 INFO @ Tue, 02 Aug 2022 18:53:38: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:53:38: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:53:38: #1 total tags in treatment: 19344003 INFO @ Tue, 02 Aug 2022 18:53:38: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:53:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:53:38: #1 tags after filtering in treatment: 12845276 INFO @ Tue, 02 Aug 2022 18:53:38: #1 Redundant rate of treatment: 0.34 INFO @ Tue, 02 Aug 2022 18:53:38: #1 finished! INFO @ Tue, 02 Aug 2022 18:53:38: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:53:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:53:38: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:53:39: #2 number of paired peaks: 1961 INFO @ Tue, 02 Aug 2022 18:53:39: start model_add_line... INFO @ Tue, 02 Aug 2022 18:53:39: start X-correlation... INFO @ Tue, 02 Aug 2022 18:53:39: end of X-cor INFO @ Tue, 02 Aug 2022 18:53:39: #2 finished! INFO @ Tue, 02 Aug 2022 18:53:39: #2 predicted fragment length is 67 bps INFO @ Tue, 02 Aug 2022 18:53:39: #2 alternative fragment length(s) may be 4,67 bps INFO @ Tue, 02 Aug 2022 18:53:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.10_model.r WARNING @ Tue, 02 Aug 2022 18:53:39: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:53:39: #2 You may need to consider one of the other alternative d(s): 4,67 WARNING @ Tue, 02 Aug 2022 18:53:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:53:39: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:53:39: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:53:45: 46000000 INFO @ Tue, 02 Aug 2022 18:53:53: 47000000 INFO @ Tue, 02 Aug 2022 18:53:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:53:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:53:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.05_summits.bed INFO @ Tue, 02 Aug 2022 18:53:54: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (19398 records, 4 fields): 24 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:54:01: 48000000 INFO @ Tue, 02 Aug 2022 18:54:04: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:54:08: 49000000 INFO @ Tue, 02 Aug 2022 18:54:15: 50000000 INFO @ Tue, 02 Aug 2022 18:54:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:54:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:54:18: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:54:18: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:54:18: #1 total tags in treatment: 19344003 INFO @ Tue, 02 Aug 2022 18:54:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:54:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:54:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.10_summits.bed INFO @ Tue, 02 Aug 2022 18:54:18: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (9334 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:54:18: #1 tags after filtering in treatment: 12845276 INFO @ Tue, 02 Aug 2022 18:54:18: #1 Redundant rate of treatment: 0.34 INFO @ Tue, 02 Aug 2022 18:54:18: #1 finished! INFO @ Tue, 02 Aug 2022 18:54:18: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:54:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:54:19: #2 number of paired peaks: 1961 INFO @ Tue, 02 Aug 2022 18:54:19: start model_add_line... INFO @ Tue, 02 Aug 2022 18:54:19: start X-correlation... INFO @ Tue, 02 Aug 2022 18:54:19: end of X-cor INFO @ Tue, 02 Aug 2022 18:54:19: #2 finished! INFO @ Tue, 02 Aug 2022 18:54:19: #2 predicted fragment length is 67 bps INFO @ Tue, 02 Aug 2022 18:54:19: #2 alternative fragment length(s) may be 4,67 bps INFO @ Tue, 02 Aug 2022 18:54:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.20_model.r WARNING @ Tue, 02 Aug 2022 18:54:19: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:54:19: #2 You may need to consider one of the other alternative d(s): 4,67 WARNING @ Tue, 02 Aug 2022 18:54:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:54:19: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:54:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:54:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:54:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:54:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:54:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178843/SRX12178843.20_summits.bed INFO @ Tue, 02 Aug 2022 18:54:57: Done! pass1 - making usageList (11 chroms): 0 millis pass2 - checking and writing primary data (1169 records, 4 fields): 5 millis CompletedMACS2peakCalling