Job ID = 16440261 SRX = SRX12178842 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:39:06 prefetch.2.10.7: 1) Downloading 'SRR15888072'... 2022-08-02T08:39:06 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:41:09 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:41:09 prefetch.2.10.7: 1) 'SRR15888072' was downloaded successfully 2022-08-02T08:41:09 prefetch.2.10.7: 'SRR15888072' has 0 unresolved dependencies Read 43192822 spots for SRR15888072/SRR15888072.sra Written 43192822 spots for SRR15888072/SRR15888072.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441105 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:29 43192822 reads; of these: 43192822 (100.00%) were paired; of these: 13267021 (30.72%) aligned concordantly 0 times 26016929 (60.23%) aligned concordantly exactly 1 time 3908872 (9.05%) aligned concordantly >1 times ---- 13267021 pairs aligned concordantly 0 times; of these: 5373585 (40.50%) aligned discordantly 1 time ---- 7893436 pairs aligned 0 times concordantly or discordantly; of these: 15786872 mates make up the pairs; of these: 9516073 (60.28%) aligned 0 times 4677182 (29.63%) aligned exactly 1 time 1593617 (10.09%) aligned >1 times 88.98% overall alignment rate Time searching: 00:48:30 Overall time: 00:48:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8019288 / 35201547 = 0.2278 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:51:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:51:43: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:51:43: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:51:48: 1000000 INFO @ Tue, 02 Aug 2022 18:51:52: 2000000 INFO @ Tue, 02 Aug 2022 18:51:57: 3000000 INFO @ Tue, 02 Aug 2022 18:52:01: 4000000 INFO @ Tue, 02 Aug 2022 18:52:06: 5000000 INFO @ Tue, 02 Aug 2022 18:52:10: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:52:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:52:13: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:52:13: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:52:14: 7000000 INFO @ Tue, 02 Aug 2022 18:52:17: 1000000 INFO @ Tue, 02 Aug 2022 18:52:19: 8000000 INFO @ Tue, 02 Aug 2022 18:52:22: 2000000 INFO @ Tue, 02 Aug 2022 18:52:24: 9000000 INFO @ Tue, 02 Aug 2022 18:52:27: 3000000 INFO @ Tue, 02 Aug 2022 18:52:28: 10000000 INFO @ Tue, 02 Aug 2022 18:52:31: 4000000 INFO @ Tue, 02 Aug 2022 18:52:33: 11000000 INFO @ Tue, 02 Aug 2022 18:52:36: 5000000 INFO @ Tue, 02 Aug 2022 18:52:37: 12000000 INFO @ Tue, 02 Aug 2022 18:52:40: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:52:42: 13000000 INFO @ Tue, 02 Aug 2022 18:52:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:52:43: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:52:43: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:52:45: 7000000 INFO @ Tue, 02 Aug 2022 18:52:47: 14000000 INFO @ Tue, 02 Aug 2022 18:52:48: 1000000 INFO @ Tue, 02 Aug 2022 18:52:50: 8000000 INFO @ Tue, 02 Aug 2022 18:52:52: 15000000 INFO @ Tue, 02 Aug 2022 18:52:53: 2000000 INFO @ Tue, 02 Aug 2022 18:52:55: 9000000 INFO @ Tue, 02 Aug 2022 18:52:57: 16000000 INFO @ Tue, 02 Aug 2022 18:52:57: 3000000 INFO @ Tue, 02 Aug 2022 18:52:59: 10000000 INFO @ Tue, 02 Aug 2022 18:53:02: 17000000 INFO @ Tue, 02 Aug 2022 18:53:02: 4000000 INFO @ Tue, 02 Aug 2022 18:53:04: 11000000 INFO @ Tue, 02 Aug 2022 18:53:06: 18000000 INFO @ Tue, 02 Aug 2022 18:53:07: 5000000 INFO @ Tue, 02 Aug 2022 18:53:09: 12000000 INFO @ Tue, 02 Aug 2022 18:53:11: 19000000 INFO @ Tue, 02 Aug 2022 18:53:12: 6000000 INFO @ Tue, 02 Aug 2022 18:53:14: 13000000 INFO @ Tue, 02 Aug 2022 18:53:16: 20000000 INFO @ Tue, 02 Aug 2022 18:53:17: 7000000 INFO @ Tue, 02 Aug 2022 18:53:18: 14000000 INFO @ Tue, 02 Aug 2022 18:53:20: 21000000 INFO @ Tue, 02 Aug 2022 18:53:22: 8000000 INFO @ Tue, 02 Aug 2022 18:53:23: 15000000 INFO @ Tue, 02 Aug 2022 18:53:25: 22000000 INFO @ Tue, 02 Aug 2022 18:53:26: 9000000 INFO @ Tue, 02 Aug 2022 18:53:28: 16000000 INFO @ Tue, 02 Aug 2022 18:53:29: 23000000 INFO @ Tue, 02 Aug 2022 18:53:31: 10000000 INFO @ Tue, 02 Aug 2022 18:53:32: 17000000 INFO @ Tue, 02 Aug 2022 18:53:34: 24000000 INFO @ Tue, 02 Aug 2022 18:53:36: 11000000 INFO @ Tue, 02 Aug 2022 18:53:37: 18000000 INFO @ Tue, 02 Aug 2022 18:53:39: 25000000 INFO @ Tue, 02 Aug 2022 18:53:41: 12000000 INFO @ Tue, 02 Aug 2022 18:53:42: 19000000 INFO @ Tue, 02 Aug 2022 18:53:43: 26000000 INFO @ Tue, 02 Aug 2022 18:53:46: 13000000 INFO @ Tue, 02 Aug 2022 18:53:47: 20000000 INFO @ Tue, 02 Aug 2022 18:53:48: 27000000 INFO @ Tue, 02 Aug 2022 18:53:50: 14000000 INFO @ Tue, 02 Aug 2022 18:53:51: 21000000 INFO @ Tue, 02 Aug 2022 18:53:52: 28000000 INFO @ Tue, 02 Aug 2022 18:53:55: 15000000 INFO @ Tue, 02 Aug 2022 18:53:56: 22000000 INFO @ Tue, 02 Aug 2022 18:53:57: 29000000 INFO @ Tue, 02 Aug 2022 18:54:00: 16000000 INFO @ Tue, 02 Aug 2022 18:54:01: 23000000 INFO @ Tue, 02 Aug 2022 18:54:02: 30000000 INFO @ Tue, 02 Aug 2022 18:54:05: 17000000 INFO @ Tue, 02 Aug 2022 18:54:05: 24000000 INFO @ Tue, 02 Aug 2022 18:54:06: 31000000 INFO @ Tue, 02 Aug 2022 18:54:09: 18000000 INFO @ Tue, 02 Aug 2022 18:54:10: 25000000 INFO @ Tue, 02 Aug 2022 18:54:11: 32000000 INFO @ Tue, 02 Aug 2022 18:54:14: 19000000 INFO @ Tue, 02 Aug 2022 18:54:14: 26000000 INFO @ Tue, 02 Aug 2022 18:54:15: 33000000 INFO @ Tue, 02 Aug 2022 18:54:18: 20000000 INFO @ Tue, 02 Aug 2022 18:54:19: 27000000 INFO @ Tue, 02 Aug 2022 18:54:20: 34000000 INFO @ Tue, 02 Aug 2022 18:54:23: 21000000 INFO @ Tue, 02 Aug 2022 18:54:24: 28000000 INFO @ Tue, 02 Aug 2022 18:54:24: 35000000 INFO @ Tue, 02 Aug 2022 18:54:27: 22000000 INFO @ Tue, 02 Aug 2022 18:54:28: 29000000 INFO @ Tue, 02 Aug 2022 18:54:29: 36000000 INFO @ Tue, 02 Aug 2022 18:54:32: 23000000 INFO @ Tue, 02 Aug 2022 18:54:33: 30000000 INFO @ Tue, 02 Aug 2022 18:54:33: 37000000 INFO @ Tue, 02 Aug 2022 18:54:37: 24000000 INFO @ Tue, 02 Aug 2022 18:54:38: 31000000 INFO @ Tue, 02 Aug 2022 18:54:38: 38000000 INFO @ Tue, 02 Aug 2022 18:54:41: 25000000 INFO @ Tue, 02 Aug 2022 18:54:42: 32000000 INFO @ Tue, 02 Aug 2022 18:54:43: 39000000 INFO @ Tue, 02 Aug 2022 18:54:46: 26000000 INFO @ Tue, 02 Aug 2022 18:54:47: 33000000 INFO @ Tue, 02 Aug 2022 18:54:47: 40000000 INFO @ Tue, 02 Aug 2022 18:54:50: 27000000 INFO @ Tue, 02 Aug 2022 18:54:52: 34000000 INFO @ Tue, 02 Aug 2022 18:54:52: 41000000 INFO @ Tue, 02 Aug 2022 18:54:55: 28000000 INFO @ Tue, 02 Aug 2022 18:54:56: 35000000 INFO @ Tue, 02 Aug 2022 18:54:57: 42000000 INFO @ Tue, 02 Aug 2022 18:54:59: 29000000 INFO @ Tue, 02 Aug 2022 18:55:01: 36000000 INFO @ Tue, 02 Aug 2022 18:55:01: 43000000 INFO @ Tue, 02 Aug 2022 18:55:04: 30000000 INFO @ Tue, 02 Aug 2022 18:55:06: 37000000 INFO @ Tue, 02 Aug 2022 18:55:06: 44000000 INFO @ Tue, 02 Aug 2022 18:55:09: 31000000 INFO @ Tue, 02 Aug 2022 18:55:10: 38000000 INFO @ Tue, 02 Aug 2022 18:55:11: 45000000 INFO @ Tue, 02 Aug 2022 18:55:14: 32000000 INFO @ Tue, 02 Aug 2022 18:55:15: 39000000 INFO @ Tue, 02 Aug 2022 18:55:15: 46000000 INFO @ Tue, 02 Aug 2022 18:55:18: 33000000 INFO @ Tue, 02 Aug 2022 18:55:20: 40000000 INFO @ Tue, 02 Aug 2022 18:55:20: 47000000 INFO @ Tue, 02 Aug 2022 18:55:23: 34000000 INFO @ Tue, 02 Aug 2022 18:55:24: 41000000 INFO @ Tue, 02 Aug 2022 18:55:25: 48000000 INFO @ Tue, 02 Aug 2022 18:55:27: 35000000 INFO @ Tue, 02 Aug 2022 18:55:29: 42000000 INFO @ Tue, 02 Aug 2022 18:55:29: 49000000 INFO @ Tue, 02 Aug 2022 18:55:32: 36000000 INFO @ Tue, 02 Aug 2022 18:55:34: 43000000 INFO @ Tue, 02 Aug 2022 18:55:34: 50000000 INFO @ Tue, 02 Aug 2022 18:55:37: 37000000 INFO @ Tue, 02 Aug 2022 18:55:39: 44000000 INFO @ Tue, 02 Aug 2022 18:55:39: 51000000 INFO @ Tue, 02 Aug 2022 18:55:41: 38000000 INFO @ Tue, 02 Aug 2022 18:55:43: 45000000 INFO @ Tue, 02 Aug 2022 18:55:44: 52000000 INFO @ Tue, 02 Aug 2022 18:55:46: 39000000 INFO @ Tue, 02 Aug 2022 18:55:48: 46000000 INFO @ Tue, 02 Aug 2022 18:55:49: 53000000 INFO @ Tue, 02 Aug 2022 18:55:50: 40000000 INFO @ Tue, 02 Aug 2022 18:55:53: 47000000 INFO @ Tue, 02 Aug 2022 18:55:54: 54000000 INFO @ Tue, 02 Aug 2022 18:55:55: 41000000 INFO @ Tue, 02 Aug 2022 18:55:57: 48000000 INFO @ Tue, 02 Aug 2022 18:55:58: 55000000 INFO @ Tue, 02 Aug 2022 18:56:00: 42000000 INFO @ Tue, 02 Aug 2022 18:56:02: 49000000 INFO @ Tue, 02 Aug 2022 18:56:03: 56000000 INFO @ Tue, 02 Aug 2022 18:56:04: 43000000 INFO @ Tue, 02 Aug 2022 18:56:07: 50000000 INFO @ Tue, 02 Aug 2022 18:56:08: 57000000 INFO @ Tue, 02 Aug 2022 18:56:09: 44000000 INFO @ Tue, 02 Aug 2022 18:56:12: 51000000 INFO @ Tue, 02 Aug 2022 18:56:12: 58000000 INFO @ Tue, 02 Aug 2022 18:56:14: 45000000 INFO @ Tue, 02 Aug 2022 18:56:17: 52000000 INFO @ Tue, 02 Aug 2022 18:56:17: 59000000 INFO @ Tue, 02 Aug 2022 18:56:18: 46000000 INFO @ Tue, 02 Aug 2022 18:56:21: 53000000 INFO @ Tue, 02 Aug 2022 18:56:22: 60000000 INFO @ Tue, 02 Aug 2022 18:56:23: 47000000 INFO @ Tue, 02 Aug 2022 18:56:26: 54000000 INFO @ Tue, 02 Aug 2022 18:56:27: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:56:27: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:56:27: #1 total tags in treatment: 22774557 INFO @ Tue, 02 Aug 2022 18:56:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:56:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:56:27: #1 tags after filtering in treatment: 14679762 INFO @ Tue, 02 Aug 2022 18:56:27: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:56:27: #1 finished! INFO @ Tue, 02 Aug 2022 18:56:27: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:56:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:56:27: 48000000 INFO @ Tue, 02 Aug 2022 18:56:28: #2 number of paired peaks: 1154 INFO @ Tue, 02 Aug 2022 18:56:28: start model_add_line... INFO @ Tue, 02 Aug 2022 18:56:28: start X-correlation... INFO @ Tue, 02 Aug 2022 18:56:28: end of X-cor INFO @ Tue, 02 Aug 2022 18:56:28: #2 finished! INFO @ Tue, 02 Aug 2022 18:56:28: #2 predicted fragment length is 62 bps INFO @ Tue, 02 Aug 2022 18:56:28: #2 alternative fragment length(s) may be 4,62 bps INFO @ Tue, 02 Aug 2022 18:56:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.05_model.r WARNING @ Tue, 02 Aug 2022 18:56:28: #2 Since the d (62) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:56:28: #2 You may need to consider one of the other alternative d(s): 4,62 WARNING @ Tue, 02 Aug 2022 18:56:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:56:28: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:56:28: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:56:31: 55000000 INFO @ Tue, 02 Aug 2022 18:56:32: 49000000 INFO @ Tue, 02 Aug 2022 18:56:35: 56000000 INFO @ Tue, 02 Aug 2022 18:56:36: 50000000 INFO @ Tue, 02 Aug 2022 18:56:40: 57000000 INFO @ Tue, 02 Aug 2022 18:56:41: 51000000 INFO @ Tue, 02 Aug 2022 18:56:45: 58000000 INFO @ Tue, 02 Aug 2022 18:56:46: 52000000 INFO @ Tue, 02 Aug 2022 18:56:49: 59000000 INFO @ Tue, 02 Aug 2022 18:56:50: 53000000 INFO @ Tue, 02 Aug 2022 18:56:54: 60000000 INFO @ Tue, 02 Aug 2022 18:56:55: 54000000 INFO @ Tue, 02 Aug 2022 18:56:58: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:56:58: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:56:58: #1 total tags in treatment: 22774557 INFO @ Tue, 02 Aug 2022 18:56:58: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:56:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:56:59: #1 tags after filtering in treatment: 14679762 INFO @ Tue, 02 Aug 2022 18:56:59: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:56:59: #1 finished! INFO @ Tue, 02 Aug 2022 18:56:59: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:56:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:56:59: 55000000 INFO @ Tue, 02 Aug 2022 18:57:00: #2 number of paired peaks: 1154 INFO @ Tue, 02 Aug 2022 18:57:00: start model_add_line... INFO @ Tue, 02 Aug 2022 18:57:00: start X-correlation... INFO @ Tue, 02 Aug 2022 18:57:00: end of X-cor INFO @ Tue, 02 Aug 2022 18:57:00: #2 finished! INFO @ Tue, 02 Aug 2022 18:57:00: #2 predicted fragment length is 62 bps INFO @ Tue, 02 Aug 2022 18:57:00: #2 alternative fragment length(s) may be 4,62 bps INFO @ Tue, 02 Aug 2022 18:57:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.10_model.r WARNING @ Tue, 02 Aug 2022 18:57:00: #2 Since the d (62) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:57:00: #2 You may need to consider one of the other alternative d(s): 4,62 WARNING @ Tue, 02 Aug 2022 18:57:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:57:00: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:57:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:57:00: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:57:04: 56000000 INFO @ Tue, 02 Aug 2022 18:57:08: 57000000 INFO @ Tue, 02 Aug 2022 18:57:13: 58000000 INFO @ Tue, 02 Aug 2022 18:57:17: 59000000 INFO @ Tue, 02 Aug 2022 18:57:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:57:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:57:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.05_summits.bed INFO @ Tue, 02 Aug 2022 18:57:18: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (19761 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:57:22: 60000000 INFO @ Tue, 02 Aug 2022 18:57:26: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:57:26: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:57:26: #1 total tags in treatment: 22774557 INFO @ Tue, 02 Aug 2022 18:57:26: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:57:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:57:26: #1 tags after filtering in treatment: 14679762 INFO @ Tue, 02 Aug 2022 18:57:26: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:57:26: #1 finished! INFO @ Tue, 02 Aug 2022 18:57:26: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:57:26: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:57:27: #2 number of paired peaks: 1154 INFO @ Tue, 02 Aug 2022 18:57:27: start model_add_line... INFO @ Tue, 02 Aug 2022 18:57:27: start X-correlation... INFO @ Tue, 02 Aug 2022 18:57:27: end of X-cor INFO @ Tue, 02 Aug 2022 18:57:27: #2 finished! INFO @ Tue, 02 Aug 2022 18:57:27: #2 predicted fragment length is 62 bps INFO @ Tue, 02 Aug 2022 18:57:27: #2 alternative fragment length(s) may be 4,62 bps INFO @ Tue, 02 Aug 2022 18:57:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.20_model.r WARNING @ Tue, 02 Aug 2022 18:57:27: #2 Since the d (62) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:57:27: #2 You may need to consider one of the other alternative d(s): 4,62 WARNING @ Tue, 02 Aug 2022 18:57:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:57:27: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:57:27: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:57:31: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:57:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:57:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:57:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.10_summits.bed INFO @ Tue, 02 Aug 2022 18:57:48: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9149 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:57:58: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:58:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:58:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:58:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178842/SRX12178842.20_summits.bed INFO @ Tue, 02 Aug 2022 18:58:15: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (897 records, 4 fields): 3 millis CompletedMACS2peakCalling