Job ID = 16440165 SRX = SRX12178836 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:24:55 prefetch.2.10.7: 1) Downloading 'SRR15888078'... 2022-08-02T08:24:55 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:27:13 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:27:13 prefetch.2.10.7: 1) 'SRR15888078' was downloaded successfully 2022-08-02T08:27:13 prefetch.2.10.7: 'SRR15888078' has 0 unresolved dependencies Read 47601017 spots for SRR15888078/SRR15888078.sra Written 47601017 spots for SRR15888078/SRR15888078.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441001 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:50:29 47601017 reads; of these: 47601017 (100.00%) were paired; of these: 14887867 (31.28%) aligned concordantly 0 times 29614968 (62.21%) aligned concordantly exactly 1 time 3098182 (6.51%) aligned concordantly >1 times ---- 14887867 pairs aligned concordantly 0 times; of these: 5011817 (33.66%) aligned discordantly 1 time ---- 9876050 pairs aligned 0 times concordantly or discordantly; of these: 19752100 mates make up the pairs; of these: 14564080 (73.73%) aligned 0 times 4086654 (20.69%) aligned exactly 1 time 1101366 (5.58%) aligned >1 times 84.70% overall alignment rate Time searching: 00:50:30 Overall time: 00:50:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 11379726 / 37602685 = 0.3026 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:44:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:44:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:44:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:44:31: 1000000 INFO @ Tue, 02 Aug 2022 18:44:38: 2000000 INFO @ Tue, 02 Aug 2022 18:44:45: 3000000 INFO @ Tue, 02 Aug 2022 18:44:51: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:44:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:44:54: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:44:54: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:44:58: 5000000 INFO @ Tue, 02 Aug 2022 18:45:02: 1000000 INFO @ Tue, 02 Aug 2022 18:45:05: 6000000 INFO @ Tue, 02 Aug 2022 18:45:09: 2000000 INFO @ Tue, 02 Aug 2022 18:45:12: 7000000 INFO @ Tue, 02 Aug 2022 18:45:16: 3000000 INFO @ Tue, 02 Aug 2022 18:45:18: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:45:22: 4000000 INFO @ Tue, 02 Aug 2022 18:45:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:45:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:45:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:45:25: 9000000 INFO @ Tue, 02 Aug 2022 18:45:28: 5000000 INFO @ Tue, 02 Aug 2022 18:45:31: 1000000 INFO @ Tue, 02 Aug 2022 18:45:32: 10000000 INFO @ Tue, 02 Aug 2022 18:45:35: 6000000 INFO @ Tue, 02 Aug 2022 18:45:38: 2000000 INFO @ Tue, 02 Aug 2022 18:45:39: 11000000 INFO @ Tue, 02 Aug 2022 18:45:41: 7000000 INFO @ Tue, 02 Aug 2022 18:45:44: 3000000 INFO @ Tue, 02 Aug 2022 18:45:45: 12000000 INFO @ Tue, 02 Aug 2022 18:45:48: 8000000 INFO @ Tue, 02 Aug 2022 18:45:51: 4000000 INFO @ Tue, 02 Aug 2022 18:45:52: 13000000 INFO @ Tue, 02 Aug 2022 18:45:54: 9000000 INFO @ Tue, 02 Aug 2022 18:45:58: 5000000 INFO @ Tue, 02 Aug 2022 18:45:58: 14000000 INFO @ Tue, 02 Aug 2022 18:46:01: 10000000 INFO @ Tue, 02 Aug 2022 18:46:04: 6000000 INFO @ Tue, 02 Aug 2022 18:46:04: 15000000 INFO @ Tue, 02 Aug 2022 18:46:07: 11000000 INFO @ Tue, 02 Aug 2022 18:46:10: 7000000 INFO @ Tue, 02 Aug 2022 18:46:11: 16000000 INFO @ Tue, 02 Aug 2022 18:46:13: 12000000 INFO @ Tue, 02 Aug 2022 18:46:17: 17000000 INFO @ Tue, 02 Aug 2022 18:46:17: 8000000 INFO @ Tue, 02 Aug 2022 18:46:20: 13000000 INFO @ Tue, 02 Aug 2022 18:46:23: 18000000 INFO @ Tue, 02 Aug 2022 18:46:24: 9000000 INFO @ Tue, 02 Aug 2022 18:46:26: 14000000 INFO @ Tue, 02 Aug 2022 18:46:28: 19000000 INFO @ Tue, 02 Aug 2022 18:46:30: 10000000 INFO @ Tue, 02 Aug 2022 18:46:32: 15000000 INFO @ Tue, 02 Aug 2022 18:46:34: 20000000 INFO @ Tue, 02 Aug 2022 18:46:36: 11000000 INFO @ Tue, 02 Aug 2022 18:46:38: 16000000 INFO @ Tue, 02 Aug 2022 18:46:40: 21000000 INFO @ Tue, 02 Aug 2022 18:46:42: 12000000 INFO @ Tue, 02 Aug 2022 18:46:44: 17000000 INFO @ Tue, 02 Aug 2022 18:46:46: 22000000 INFO @ Tue, 02 Aug 2022 18:46:49: 13000000 INFO @ Tue, 02 Aug 2022 18:46:50: 18000000 INFO @ Tue, 02 Aug 2022 18:46:52: 23000000 INFO @ Tue, 02 Aug 2022 18:46:55: 14000000 INFO @ Tue, 02 Aug 2022 18:46:56: 19000000 INFO @ Tue, 02 Aug 2022 18:46:58: 24000000 INFO @ Tue, 02 Aug 2022 18:47:01: 15000000 INFO @ Tue, 02 Aug 2022 18:47:02: 20000000 INFO @ Tue, 02 Aug 2022 18:47:04: 25000000 INFO @ Tue, 02 Aug 2022 18:47:07: 16000000 INFO @ Tue, 02 Aug 2022 18:47:09: 21000000 INFO @ Tue, 02 Aug 2022 18:47:10: 26000000 INFO @ Tue, 02 Aug 2022 18:47:14: 17000000 INFO @ Tue, 02 Aug 2022 18:47:15: 22000000 INFO @ Tue, 02 Aug 2022 18:47:16: 27000000 INFO @ Tue, 02 Aug 2022 18:47:20: 18000000 INFO @ Tue, 02 Aug 2022 18:47:22: 23000000 INFO @ Tue, 02 Aug 2022 18:47:22: 28000000 INFO @ Tue, 02 Aug 2022 18:47:27: 19000000 INFO @ Tue, 02 Aug 2022 18:47:28: 29000000 INFO @ Tue, 02 Aug 2022 18:47:28: 24000000 INFO @ Tue, 02 Aug 2022 18:47:33: 20000000 INFO @ Tue, 02 Aug 2022 18:47:34: 30000000 INFO @ Tue, 02 Aug 2022 18:47:34: 25000000 INFO @ Tue, 02 Aug 2022 18:47:39: 21000000 INFO @ Tue, 02 Aug 2022 18:47:40: 31000000 INFO @ Tue, 02 Aug 2022 18:47:41: 26000000 INFO @ Tue, 02 Aug 2022 18:47:46: 22000000 INFO @ Tue, 02 Aug 2022 18:47:46: 32000000 INFO @ Tue, 02 Aug 2022 18:47:47: 27000000 INFO @ Tue, 02 Aug 2022 18:47:52: 23000000 INFO @ Tue, 02 Aug 2022 18:47:52: 33000000 INFO @ Tue, 02 Aug 2022 18:47:53: 28000000 INFO @ Tue, 02 Aug 2022 18:47:58: 24000000 INFO @ Tue, 02 Aug 2022 18:47:58: 34000000 INFO @ Tue, 02 Aug 2022 18:48:00: 29000000 INFO @ Tue, 02 Aug 2022 18:48:04: 35000000 INFO @ Tue, 02 Aug 2022 18:48:05: 25000000 INFO @ Tue, 02 Aug 2022 18:48:06: 30000000 INFO @ Tue, 02 Aug 2022 18:48:10: 36000000 INFO @ Tue, 02 Aug 2022 18:48:11: 26000000 INFO @ Tue, 02 Aug 2022 18:48:13: 31000000 INFO @ Tue, 02 Aug 2022 18:48:16: 37000000 INFO @ Tue, 02 Aug 2022 18:48:17: 27000000 INFO @ Tue, 02 Aug 2022 18:48:19: 32000000 INFO @ Tue, 02 Aug 2022 18:48:22: 38000000 INFO @ Tue, 02 Aug 2022 18:48:23: 28000000 INFO @ Tue, 02 Aug 2022 18:48:26: 33000000 INFO @ Tue, 02 Aug 2022 18:48:28: 39000000 INFO @ Tue, 02 Aug 2022 18:48:30: 29000000 INFO @ Tue, 02 Aug 2022 18:48:32: 34000000 INFO @ Tue, 02 Aug 2022 18:48:34: 40000000 INFO @ Tue, 02 Aug 2022 18:48:36: 30000000 INFO @ Tue, 02 Aug 2022 18:48:38: 35000000 INFO @ Tue, 02 Aug 2022 18:48:40: 41000000 INFO @ Tue, 02 Aug 2022 18:48:43: 31000000 INFO @ Tue, 02 Aug 2022 18:48:44: 36000000 INFO @ Tue, 02 Aug 2022 18:48:46: 42000000 INFO @ Tue, 02 Aug 2022 18:48:49: 32000000 INFO @ Tue, 02 Aug 2022 18:48:51: 37000000 INFO @ Tue, 02 Aug 2022 18:48:52: 43000000 INFO @ Tue, 02 Aug 2022 18:48:55: 33000000 INFO @ Tue, 02 Aug 2022 18:48:57: 38000000 INFO @ Tue, 02 Aug 2022 18:48:58: 44000000 INFO @ Tue, 02 Aug 2022 18:49:02: 34000000 INFO @ Tue, 02 Aug 2022 18:49:03: 39000000 INFO @ Tue, 02 Aug 2022 18:49:05: 45000000 INFO @ Tue, 02 Aug 2022 18:49:08: 35000000 INFO @ Tue, 02 Aug 2022 18:49:10: 40000000 INFO @ Tue, 02 Aug 2022 18:49:12: 46000000 INFO @ Tue, 02 Aug 2022 18:49:15: 36000000 INFO @ Tue, 02 Aug 2022 18:49:16: 41000000 INFO @ Tue, 02 Aug 2022 18:49:19: 47000000 INFO @ Tue, 02 Aug 2022 18:49:21: 37000000 INFO @ Tue, 02 Aug 2022 18:49:22: 42000000 INFO @ Tue, 02 Aug 2022 18:49:26: 48000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:49:28: 38000000 INFO @ Tue, 02 Aug 2022 18:49:29: 43000000 INFO @ Tue, 02 Aug 2022 18:49:33: 49000000 INFO @ Tue, 02 Aug 2022 18:49:35: 39000000 INFO @ Tue, 02 Aug 2022 18:49:35: 44000000 INFO @ Tue, 02 Aug 2022 18:49:39: 50000000 INFO @ Tue, 02 Aug 2022 18:49:42: 40000000 INFO @ Tue, 02 Aug 2022 18:49:42: 45000000 INFO @ Tue, 02 Aug 2022 18:49:47: 51000000 INFO @ Tue, 02 Aug 2022 18:49:49: 46000000 INFO @ Tue, 02 Aug 2022 18:49:49: 41000000 INFO @ Tue, 02 Aug 2022 18:49:54: 52000000 INFO @ Tue, 02 Aug 2022 18:49:56: 47000000 INFO @ Tue, 02 Aug 2022 18:49:57: 42000000 INFO @ Tue, 02 Aug 2022 18:50:02: 53000000 INFO @ Tue, 02 Aug 2022 18:50:04: 48000000 INFO @ Tue, 02 Aug 2022 18:50:04: 43000000 INFO @ Tue, 02 Aug 2022 18:50:09: 54000000 INFO @ Tue, 02 Aug 2022 18:50:11: 49000000 INFO @ Tue, 02 Aug 2022 18:50:11: 44000000 INFO @ Tue, 02 Aug 2022 18:50:17: 55000000 INFO @ Tue, 02 Aug 2022 18:50:18: 50000000 INFO @ Tue, 02 Aug 2022 18:50:18: 45000000 INFO @ Tue, 02 Aug 2022 18:50:24: 56000000 INFO @ Tue, 02 Aug 2022 18:50:25: 51000000 INFO @ Tue, 02 Aug 2022 18:50:26: 46000000 INFO @ Tue, 02 Aug 2022 18:50:32: 57000000 INFO @ Tue, 02 Aug 2022 18:50:32: 52000000 INFO @ Tue, 02 Aug 2022 18:50:33: 47000000 INFO @ Tue, 02 Aug 2022 18:50:38: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:50:38: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:50:38: #1 total tags in treatment: 22443094 INFO @ Tue, 02 Aug 2022 18:50:38: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:50:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:50:39: #1 tags after filtering in treatment: 14362667 INFO @ Tue, 02 Aug 2022 18:50:39: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:50:39: #1 finished! INFO @ Tue, 02 Aug 2022 18:50:39: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:50:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:50:40: 53000000 INFO @ Tue, 02 Aug 2022 18:50:40: #2 number of paired peaks: 1657 INFO @ Tue, 02 Aug 2022 18:50:40: start model_add_line... INFO @ Tue, 02 Aug 2022 18:50:40: start X-correlation... INFO @ Tue, 02 Aug 2022 18:50:40: end of X-cor INFO @ Tue, 02 Aug 2022 18:50:40: #2 finished! INFO @ Tue, 02 Aug 2022 18:50:40: #2 predicted fragment length is 67 bps INFO @ Tue, 02 Aug 2022 18:50:40: #2 alternative fragment length(s) may be 67 bps INFO @ Tue, 02 Aug 2022 18:50:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.05_model.r WARNING @ Tue, 02 Aug 2022 18:50:40: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:50:40: #2 You may need to consider one of the other alternative d(s): 67 WARNING @ Tue, 02 Aug 2022 18:50:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:50:40: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:50:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:50:41: 48000000 INFO @ Tue, 02 Aug 2022 18:50:47: 54000000 INFO @ Tue, 02 Aug 2022 18:50:48: 49000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:50:55: 55000000 INFO @ Tue, 02 Aug 2022 18:50:56: 50000000 INFO @ Tue, 02 Aug 2022 18:51:02: 56000000 INFO @ Tue, 02 Aug 2022 18:51:03: 51000000 INFO @ Tue, 02 Aug 2022 18:51:08: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:51:09: 57000000 INFO @ Tue, 02 Aug 2022 18:51:10: 52000000 INFO @ Tue, 02 Aug 2022 18:51:16: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:51:16: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:51:16: #1 total tags in treatment: 22443094 INFO @ Tue, 02 Aug 2022 18:51:16: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:51:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:51:16: #1 tags after filtering in treatment: 14362667 INFO @ Tue, 02 Aug 2022 18:51:16: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:51:16: #1 finished! INFO @ Tue, 02 Aug 2022 18:51:16: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:51:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:51:17: #2 number of paired peaks: 1657 INFO @ Tue, 02 Aug 2022 18:51:17: start model_add_line... INFO @ Tue, 02 Aug 2022 18:51:18: start X-correlation... INFO @ Tue, 02 Aug 2022 18:51:18: end of X-cor INFO @ Tue, 02 Aug 2022 18:51:18: #2 finished! INFO @ Tue, 02 Aug 2022 18:51:18: #2 predicted fragment length is 67 bps INFO @ Tue, 02 Aug 2022 18:51:18: #2 alternative fragment length(s) may be 67 bps INFO @ Tue, 02 Aug 2022 18:51:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.10_model.r WARNING @ Tue, 02 Aug 2022 18:51:18: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:51:18: #2 You may need to consider one of the other alternative d(s): 67 WARNING @ Tue, 02 Aug 2022 18:51:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:51:18: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:51:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:51:18: 53000000 INFO @ Tue, 02 Aug 2022 18:51:24: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:51:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:51:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.05_summits.bed INFO @ Tue, 02 Aug 2022 18:51:25: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (19919 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:51:26: 54000000 INFO @ Tue, 02 Aug 2022 18:51:34: 55000000 INFO @ Tue, 02 Aug 2022 18:51:41: 56000000 INFO @ Tue, 02 Aug 2022 18:51:46: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:51:48: 57000000 INFO @ Tue, 02 Aug 2022 18:51:55: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:51:55: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:51:55: #1 total tags in treatment: 22443094 INFO @ Tue, 02 Aug 2022 18:51:55: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:51:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:51:56: #1 tags after filtering in treatment: 14362667 INFO @ Tue, 02 Aug 2022 18:51:56: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:51:56: #1 finished! INFO @ Tue, 02 Aug 2022 18:51:56: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:51:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:51:57: #2 number of paired peaks: 1657 INFO @ Tue, 02 Aug 2022 18:51:57: start model_add_line... INFO @ Tue, 02 Aug 2022 18:51:57: start X-correlation... INFO @ Tue, 02 Aug 2022 18:51:57: end of X-cor INFO @ Tue, 02 Aug 2022 18:51:57: #2 finished! INFO @ Tue, 02 Aug 2022 18:51:57: #2 predicted fragment length is 67 bps INFO @ Tue, 02 Aug 2022 18:51:57: #2 alternative fragment length(s) may be 67 bps INFO @ Tue, 02 Aug 2022 18:51:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.20_model.r WARNING @ Tue, 02 Aug 2022 18:51:57: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:51:57: #2 You may need to consider one of the other alternative d(s): 67 WARNING @ Tue, 02 Aug 2022 18:51:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:51:57: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:51:57: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:52:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:52:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:52:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.10_summits.bed INFO @ Tue, 02 Aug 2022 18:52:02: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (11585 records, 4 fields): 27 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:52:26: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:52:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:52:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:52:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178836/SRX12178836.20_summits.bed INFO @ Tue, 02 Aug 2022 18:52:41: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (3130 records, 4 fields): 6 millis CompletedMACS2peakCalling