Job ID = 16440148 SRX = SRX12178825 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:21:22 prefetch.2.10.7: 1) Downloading 'SRR15888089'... 2022-08-02T08:21:22 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:22:57 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:22:57 prefetch.2.10.7: 1) 'SRR15888089' was downloaded successfully 2022-08-02T08:22:57 prefetch.2.10.7: 'SRR15888089' has 0 unresolved dependencies Read 33242729 spots for SRR15888089/SRR15888089.sra Written 33242729 spots for SRR15888089/SRR15888089.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440920 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:38:31 33242729 reads; of these: 33242729 (100.00%) were paired; of these: 10439355 (31.40%) aligned concordantly 0 times 16273573 (48.95%) aligned concordantly exactly 1 time 6529801 (19.64%) aligned concordantly >1 times ---- 10439355 pairs aligned concordantly 0 times; of these: 3926687 (37.61%) aligned discordantly 1 time ---- 6512668 pairs aligned 0 times concordantly or discordantly; of these: 13025336 mates make up the pairs; of these: 7811345 (59.97%) aligned 0 times 3339505 (25.64%) aligned exactly 1 time 1874486 (14.39%) aligned >1 times 88.25% overall alignment rate Time searching: 00:38:32 Overall time: 00:38:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6148290 / 26642914 = 0.2308 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:20:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:20:10: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:20:10: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:20:16: 1000000 INFO @ Tue, 02 Aug 2022 18:20:22: 2000000 INFO @ Tue, 02 Aug 2022 18:20:28: 3000000 INFO @ Tue, 02 Aug 2022 18:20:34: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:20:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:20:38: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:20:38: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:20:40: 5000000 INFO @ Tue, 02 Aug 2022 18:20:45: 1000000 INFO @ Tue, 02 Aug 2022 18:20:47: 6000000 INFO @ Tue, 02 Aug 2022 18:20:52: 2000000 INFO @ Tue, 02 Aug 2022 18:20:54: 7000000 INFO @ Tue, 02 Aug 2022 18:20:59: 3000000 INFO @ Tue, 02 Aug 2022 18:21:01: 8000000 INFO @ Tue, 02 Aug 2022 18:21:05: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:21:07: 9000000 INFO @ Tue, 02 Aug 2022 18:21:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:21:08: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:21:08: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:21:12: 5000000 INFO @ Tue, 02 Aug 2022 18:21:14: 10000000 INFO @ Tue, 02 Aug 2022 18:21:16: 1000000 INFO @ Tue, 02 Aug 2022 18:21:19: 6000000 INFO @ Tue, 02 Aug 2022 18:21:22: 11000000 INFO @ Tue, 02 Aug 2022 18:21:23: 2000000 INFO @ Tue, 02 Aug 2022 18:21:26: 7000000 INFO @ Tue, 02 Aug 2022 18:21:29: 12000000 INFO @ Tue, 02 Aug 2022 18:21:30: 3000000 INFO @ Tue, 02 Aug 2022 18:21:33: 8000000 INFO @ Tue, 02 Aug 2022 18:21:36: 13000000 INFO @ Tue, 02 Aug 2022 18:21:37: 4000000 INFO @ Tue, 02 Aug 2022 18:21:40: 9000000 INFO @ Tue, 02 Aug 2022 18:21:43: 5000000 INFO @ Tue, 02 Aug 2022 18:21:44: 14000000 INFO @ Tue, 02 Aug 2022 18:21:46: 10000000 INFO @ Tue, 02 Aug 2022 18:21:50: 6000000 INFO @ Tue, 02 Aug 2022 18:21:51: 15000000 INFO @ Tue, 02 Aug 2022 18:21:53: 11000000 INFO @ Tue, 02 Aug 2022 18:21:57: 7000000 INFO @ Tue, 02 Aug 2022 18:21:58: 16000000 INFO @ Tue, 02 Aug 2022 18:22:00: 12000000 INFO @ Tue, 02 Aug 2022 18:22:04: 8000000 INFO @ Tue, 02 Aug 2022 18:22:05: 17000000 INFO @ Tue, 02 Aug 2022 18:22:07: 13000000 INFO @ Tue, 02 Aug 2022 18:22:10: 9000000 INFO @ Tue, 02 Aug 2022 18:22:12: 18000000 INFO @ Tue, 02 Aug 2022 18:22:14: 14000000 INFO @ Tue, 02 Aug 2022 18:22:17: 10000000 INFO @ Tue, 02 Aug 2022 18:22:19: 19000000 INFO @ Tue, 02 Aug 2022 18:22:21: 15000000 INFO @ Tue, 02 Aug 2022 18:22:24: 11000000 INFO @ Tue, 02 Aug 2022 18:22:26: 20000000 INFO @ Tue, 02 Aug 2022 18:22:28: 16000000 INFO @ Tue, 02 Aug 2022 18:22:31: 12000000 INFO @ Tue, 02 Aug 2022 18:22:32: 21000000 INFO @ Tue, 02 Aug 2022 18:22:35: 17000000 INFO @ Tue, 02 Aug 2022 18:22:37: 13000000 INFO @ Tue, 02 Aug 2022 18:22:39: 22000000 INFO @ Tue, 02 Aug 2022 18:22:42: 18000000 INFO @ Tue, 02 Aug 2022 18:22:44: 14000000 INFO @ Tue, 02 Aug 2022 18:22:45: 23000000 INFO @ Tue, 02 Aug 2022 18:22:48: 19000000 INFO @ Tue, 02 Aug 2022 18:22:51: 15000000 INFO @ Tue, 02 Aug 2022 18:22:52: 24000000 INFO @ Tue, 02 Aug 2022 18:22:55: 20000000 INFO @ Tue, 02 Aug 2022 18:22:58: 16000000 INFO @ Tue, 02 Aug 2022 18:22:58: 25000000 INFO @ Tue, 02 Aug 2022 18:23:02: 21000000 INFO @ Tue, 02 Aug 2022 18:23:04: 17000000 INFO @ Tue, 02 Aug 2022 18:23:05: 26000000 INFO @ Tue, 02 Aug 2022 18:23:09: 22000000 INFO @ Tue, 02 Aug 2022 18:23:11: 18000000 INFO @ Tue, 02 Aug 2022 18:23:11: 27000000 INFO @ Tue, 02 Aug 2022 18:23:16: 23000000 INFO @ Tue, 02 Aug 2022 18:23:18: 19000000 INFO @ Tue, 02 Aug 2022 18:23:18: 28000000 INFO @ Tue, 02 Aug 2022 18:23:22: 24000000 INFO @ Tue, 02 Aug 2022 18:23:24: 20000000 INFO @ Tue, 02 Aug 2022 18:23:25: 29000000 INFO @ Tue, 02 Aug 2022 18:23:29: 25000000 INFO @ Tue, 02 Aug 2022 18:23:31: 21000000 INFO @ Tue, 02 Aug 2022 18:23:31: 30000000 INFO @ Tue, 02 Aug 2022 18:23:36: 26000000 INFO @ Tue, 02 Aug 2022 18:23:38: 22000000 INFO @ Tue, 02 Aug 2022 18:23:38: 31000000 INFO @ Tue, 02 Aug 2022 18:23:42: 27000000 INFO @ Tue, 02 Aug 2022 18:23:44: 23000000 INFO @ Tue, 02 Aug 2022 18:23:45: 32000000 INFO @ Tue, 02 Aug 2022 18:23:49: 28000000 INFO @ Tue, 02 Aug 2022 18:23:51: 24000000 INFO @ Tue, 02 Aug 2022 18:23:51: 33000000 INFO @ Tue, 02 Aug 2022 18:23:56: 29000000 INFO @ Tue, 02 Aug 2022 18:23:58: 25000000 INFO @ Tue, 02 Aug 2022 18:23:58: 34000000 INFO @ Tue, 02 Aug 2022 18:24:02: 30000000 INFO @ Tue, 02 Aug 2022 18:24:04: 35000000 INFO @ Tue, 02 Aug 2022 18:24:04: 26000000 INFO @ Tue, 02 Aug 2022 18:24:09: 31000000 INFO @ Tue, 02 Aug 2022 18:24:10: 36000000 INFO @ Tue, 02 Aug 2022 18:24:11: 27000000 INFO @ Tue, 02 Aug 2022 18:24:16: 32000000 INFO @ Tue, 02 Aug 2022 18:24:17: 37000000 INFO @ Tue, 02 Aug 2022 18:24:18: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:24:22: 33000000 INFO @ Tue, 02 Aug 2022 18:24:24: 38000000 INFO @ Tue, 02 Aug 2022 18:24:24: 29000000 INFO @ Tue, 02 Aug 2022 18:24:28: 34000000 INFO @ Tue, 02 Aug 2022 18:24:30: 39000000 INFO @ Tue, 02 Aug 2022 18:24:31: 30000000 INFO @ Tue, 02 Aug 2022 18:24:35: 35000000 INFO @ Tue, 02 Aug 2022 18:24:36: 40000000 INFO @ Tue, 02 Aug 2022 18:24:37: 31000000 INFO @ Tue, 02 Aug 2022 18:24:41: 36000000 INFO @ Tue, 02 Aug 2022 18:24:43: 41000000 INFO @ Tue, 02 Aug 2022 18:24:43: 32000000 INFO @ Tue, 02 Aug 2022 18:24:47: 37000000 INFO @ Tue, 02 Aug 2022 18:24:49: 42000000 INFO @ Tue, 02 Aug 2022 18:24:50: 33000000 INFO @ Tue, 02 Aug 2022 18:24:54: 38000000 INFO @ Tue, 02 Aug 2022 18:24:55: 43000000 INFO @ Tue, 02 Aug 2022 18:24:56: 34000000 INFO @ Tue, 02 Aug 2022 18:25:00: 39000000 INFO @ Tue, 02 Aug 2022 18:25:01: 44000000 INFO @ Tue, 02 Aug 2022 18:25:02: 35000000 INFO @ Tue, 02 Aug 2022 18:25:06: 40000000 INFO @ Tue, 02 Aug 2022 18:25:07: 45000000 INFO @ Tue, 02 Aug 2022 18:25:08: 36000000 INFO @ Tue, 02 Aug 2022 18:25:12: 41000000 INFO @ Tue, 02 Aug 2022 18:25:13: 46000000 INFO @ Tue, 02 Aug 2022 18:25:14: 37000000 INFO @ Tue, 02 Aug 2022 18:25:16: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:25:16: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:25:16: #1 total tags in treatment: 17063057 INFO @ Tue, 02 Aug 2022 18:25:16: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:25:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:25:16: #1 tags after filtering in treatment: 12204797 INFO @ Tue, 02 Aug 2022 18:25:16: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 02 Aug 2022 18:25:16: #1 finished! INFO @ Tue, 02 Aug 2022 18:25:16: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:25:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:25:17: #2 number of paired peaks: 723 WARNING @ Tue, 02 Aug 2022 18:25:17: Fewer paired peaks (723) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 723 pairs to build model! INFO @ Tue, 02 Aug 2022 18:25:17: start model_add_line... INFO @ Tue, 02 Aug 2022 18:25:17: start X-correlation... INFO @ Tue, 02 Aug 2022 18:25:17: end of X-cor INFO @ Tue, 02 Aug 2022 18:25:17: #2 finished! INFO @ Tue, 02 Aug 2022 18:25:17: #2 predicted fragment length is 109 bps INFO @ Tue, 02 Aug 2022 18:25:17: #2 alternative fragment length(s) may be 109 bps INFO @ Tue, 02 Aug 2022 18:25:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.05_model.r INFO @ Tue, 02 Aug 2022 18:25:17: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:25:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:25:18: 42000000 INFO @ Tue, 02 Aug 2022 18:25:20: 38000000 INFO @ Tue, 02 Aug 2022 18:25:24: 43000000 INFO @ Tue, 02 Aug 2022 18:25:26: 39000000 INFO @ Tue, 02 Aug 2022 18:25:30: 44000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:25:32: 40000000 INFO @ Tue, 02 Aug 2022 18:25:36: 45000000 INFO @ Tue, 02 Aug 2022 18:25:39: 41000000 INFO @ Tue, 02 Aug 2022 18:25:41: 46000000 INFO @ Tue, 02 Aug 2022 18:25:44: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:25:44: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:25:44: #1 total tags in treatment: 17063057 INFO @ Tue, 02 Aug 2022 18:25:44: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:25:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:25:44: #1 tags after filtering in treatment: 12204797 INFO @ Tue, 02 Aug 2022 18:25:44: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 02 Aug 2022 18:25:44: #1 finished! INFO @ Tue, 02 Aug 2022 18:25:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:25:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:25:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:25:44: 42000000 INFO @ Tue, 02 Aug 2022 18:25:45: #2 number of paired peaks: 723 WARNING @ Tue, 02 Aug 2022 18:25:45: Fewer paired peaks (723) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 723 pairs to build model! INFO @ Tue, 02 Aug 2022 18:25:45: start model_add_line... INFO @ Tue, 02 Aug 2022 18:25:45: start X-correlation... INFO @ Tue, 02 Aug 2022 18:25:45: end of X-cor INFO @ Tue, 02 Aug 2022 18:25:45: #2 finished! INFO @ Tue, 02 Aug 2022 18:25:45: #2 predicted fragment length is 109 bps INFO @ Tue, 02 Aug 2022 18:25:45: #2 alternative fragment length(s) may be 109 bps INFO @ Tue, 02 Aug 2022 18:25:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.10_model.r INFO @ Tue, 02 Aug 2022 18:25:45: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:25:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:25:50: 43000000 INFO @ Tue, 02 Aug 2022 18:25:55: 44000000 INFO @ Tue, 02 Aug 2022 18:25:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:25:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:26:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.05_summits.bed INFO @ Tue, 02 Aug 2022 18:26:00: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11360 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:26:01: 45000000 INFO @ Tue, 02 Aug 2022 18:26:07: 46000000 INFO @ Tue, 02 Aug 2022 18:26:09: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:26:09: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:26:09: #1 total tags in treatment: 17063057 INFO @ Tue, 02 Aug 2022 18:26:09: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:26:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:26:09: #1 tags after filtering in treatment: 12204797 INFO @ Tue, 02 Aug 2022 18:26:09: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 02 Aug 2022 18:26:09: #1 finished! INFO @ Tue, 02 Aug 2022 18:26:09: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:26:09: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:26:10: #2 number of paired peaks: 723 WARNING @ Tue, 02 Aug 2022 18:26:10: Fewer paired peaks (723) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 723 pairs to build model! INFO @ Tue, 02 Aug 2022 18:26:10: start model_add_line... INFO @ Tue, 02 Aug 2022 18:26:10: start X-correlation... INFO @ Tue, 02 Aug 2022 18:26:10: end of X-cor INFO @ Tue, 02 Aug 2022 18:26:10: #2 finished! INFO @ Tue, 02 Aug 2022 18:26:10: #2 predicted fragment length is 109 bps INFO @ Tue, 02 Aug 2022 18:26:10: #2 alternative fragment length(s) may be 109 bps INFO @ Tue, 02 Aug 2022 18:26:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.20_model.r INFO @ Tue, 02 Aug 2022 18:26:10: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:26:10: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:26:11: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:26:25: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:26:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:26:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.10_summits.bed INFO @ Tue, 02 Aug 2022 18:26:25: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (6299 records, 4 fields): 46 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:26:37: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:26:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:26:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:26:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178825/SRX12178825.20_summits.bed INFO @ Tue, 02 Aug 2022 18:26:52: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (1517 records, 4 fields): 32 millis CompletedMACS2peakCalling