Job ID = 16440135 SRX = SRX12178822 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:19:38 prefetch.2.10.7: 1) Downloading 'SRR15888092'... 2022-08-02T08:19:38 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:22:11 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:22:11 prefetch.2.10.7: 1) 'SRR15888092' was downloaded successfully 2022-08-02T08:22:11 prefetch.2.10.7: 'SRR15888092' has 0 unresolved dependencies Read 45507550 spots for SRR15888092/SRR15888092.sra Written 45507550 spots for SRR15888092/SRR15888092.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440946 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:42:00 45507550 reads; of these: 45507550 (100.00%) were paired; of these: 14197520 (31.20%) aligned concordantly 0 times 26783766 (58.86%) aligned concordantly exactly 1 time 4526264 (9.95%) aligned concordantly >1 times ---- 14197520 pairs aligned concordantly 0 times; of these: 5480982 (38.61%) aligned discordantly 1 time ---- 8716538 pairs aligned 0 times concordantly or discordantly; of these: 17433076 mates make up the pairs; of these: 10374570 (59.51%) aligned 0 times 5241638 (30.07%) aligned exactly 1 time 1816868 (10.42%) aligned >1 times 88.60% overall alignment rate Time searching: 00:42:00 Overall time: 00:42:00 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6076419 / 36678169 = 0.1657 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:26:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:26:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:26:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:26:29: 1000000 INFO @ Tue, 02 Aug 2022 18:26:33: 2000000 INFO @ Tue, 02 Aug 2022 18:26:37: 3000000 INFO @ Tue, 02 Aug 2022 18:26:42: 4000000 INFO @ Tue, 02 Aug 2022 18:26:46: 5000000 INFO @ Tue, 02 Aug 2022 18:26:50: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:26:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:26:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:26:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:26:54: 7000000 INFO @ Tue, 02 Aug 2022 18:26:58: 1000000 INFO @ Tue, 02 Aug 2022 18:26:59: 8000000 INFO @ Tue, 02 Aug 2022 18:27:03: 9000000 INFO @ Tue, 02 Aug 2022 18:27:04: 2000000 INFO @ Tue, 02 Aug 2022 18:27:08: 10000000 INFO @ Tue, 02 Aug 2022 18:27:09: 3000000 INFO @ Tue, 02 Aug 2022 18:27:12: 11000000 INFO @ Tue, 02 Aug 2022 18:27:14: 4000000 INFO @ Tue, 02 Aug 2022 18:27:17: 12000000 INFO @ Tue, 02 Aug 2022 18:27:20: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:27:22: 13000000 INFO @ Tue, 02 Aug 2022 18:27:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:27:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:27:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:27:25: 6000000 INFO @ Tue, 02 Aug 2022 18:27:26: 14000000 INFO @ Tue, 02 Aug 2022 18:27:28: 1000000 INFO @ Tue, 02 Aug 2022 18:27:30: 7000000 INFO @ Tue, 02 Aug 2022 18:27:31: 15000000 INFO @ Tue, 02 Aug 2022 18:27:32: 2000000 INFO @ Tue, 02 Aug 2022 18:27:35: 16000000 INFO @ Tue, 02 Aug 2022 18:27:36: 8000000 INFO @ Tue, 02 Aug 2022 18:27:37: 3000000 INFO @ Tue, 02 Aug 2022 18:27:40: 17000000 INFO @ Tue, 02 Aug 2022 18:27:41: 9000000 INFO @ Tue, 02 Aug 2022 18:27:41: 4000000 INFO @ Tue, 02 Aug 2022 18:27:44: 18000000 INFO @ Tue, 02 Aug 2022 18:27:46: 5000000 INFO @ Tue, 02 Aug 2022 18:27:46: 10000000 INFO @ Tue, 02 Aug 2022 18:27:49: 19000000 INFO @ Tue, 02 Aug 2022 18:27:50: 6000000 INFO @ Tue, 02 Aug 2022 18:27:52: 11000000 INFO @ Tue, 02 Aug 2022 18:27:53: 20000000 INFO @ Tue, 02 Aug 2022 18:27:55: 7000000 INFO @ Tue, 02 Aug 2022 18:27:57: 12000000 INFO @ Tue, 02 Aug 2022 18:27:58: 21000000 INFO @ Tue, 02 Aug 2022 18:27:59: 8000000 INFO @ Tue, 02 Aug 2022 18:28:02: 13000000 INFO @ Tue, 02 Aug 2022 18:28:02: 22000000 INFO @ Tue, 02 Aug 2022 18:28:04: 9000000 INFO @ Tue, 02 Aug 2022 18:28:07: 23000000 INFO @ Tue, 02 Aug 2022 18:28:07: 14000000 INFO @ Tue, 02 Aug 2022 18:28:09: 10000000 INFO @ Tue, 02 Aug 2022 18:28:12: 24000000 INFO @ Tue, 02 Aug 2022 18:28:12: 15000000 INFO @ Tue, 02 Aug 2022 18:28:13: 11000000 INFO @ Tue, 02 Aug 2022 18:28:16: 25000000 INFO @ Tue, 02 Aug 2022 18:28:18: 16000000 INFO @ Tue, 02 Aug 2022 18:28:18: 12000000 INFO @ Tue, 02 Aug 2022 18:28:21: 26000000 INFO @ Tue, 02 Aug 2022 18:28:22: 13000000 INFO @ Tue, 02 Aug 2022 18:28:23: 17000000 INFO @ Tue, 02 Aug 2022 18:28:25: 27000000 INFO @ Tue, 02 Aug 2022 18:28:27: 14000000 INFO @ Tue, 02 Aug 2022 18:28:28: 18000000 INFO @ Tue, 02 Aug 2022 18:28:30: 28000000 INFO @ Tue, 02 Aug 2022 18:28:32: 15000000 INFO @ Tue, 02 Aug 2022 18:28:33: 19000000 INFO @ Tue, 02 Aug 2022 18:28:34: 29000000 INFO @ Tue, 02 Aug 2022 18:28:36: 16000000 INFO @ Tue, 02 Aug 2022 18:28:38: 20000000 INFO @ Tue, 02 Aug 2022 18:28:39: 30000000 INFO @ Tue, 02 Aug 2022 18:28:41: 17000000 INFO @ Tue, 02 Aug 2022 18:28:43: 31000000 INFO @ Tue, 02 Aug 2022 18:28:44: 21000000 INFO @ Tue, 02 Aug 2022 18:28:45: 18000000 INFO @ Tue, 02 Aug 2022 18:28:48: 32000000 INFO @ Tue, 02 Aug 2022 18:28:49: 22000000 INFO @ Tue, 02 Aug 2022 18:28:50: 19000000 INFO @ Tue, 02 Aug 2022 18:28:52: 33000000 INFO @ Tue, 02 Aug 2022 18:28:54: 23000000 INFO @ Tue, 02 Aug 2022 18:28:54: 20000000 INFO @ Tue, 02 Aug 2022 18:28:57: 34000000 INFO @ Tue, 02 Aug 2022 18:28:59: 21000000 INFO @ Tue, 02 Aug 2022 18:28:59: 24000000 INFO @ Tue, 02 Aug 2022 18:29:01: 35000000 INFO @ Tue, 02 Aug 2022 18:29:03: 22000000 INFO @ Tue, 02 Aug 2022 18:29:04: 25000000 INFO @ Tue, 02 Aug 2022 18:29:06: 36000000 INFO @ Tue, 02 Aug 2022 18:29:08: 23000000 INFO @ Tue, 02 Aug 2022 18:29:09: 26000000 INFO @ Tue, 02 Aug 2022 18:29:10: 37000000 INFO @ Tue, 02 Aug 2022 18:29:12: 24000000 INFO @ Tue, 02 Aug 2022 18:29:14: 38000000 INFO @ Tue, 02 Aug 2022 18:29:15: 27000000 INFO @ Tue, 02 Aug 2022 18:29:17: 25000000 INFO @ Tue, 02 Aug 2022 18:29:19: 39000000 INFO @ Tue, 02 Aug 2022 18:29:20: 28000000 INFO @ Tue, 02 Aug 2022 18:29:22: 26000000 INFO @ Tue, 02 Aug 2022 18:29:23: 40000000 INFO @ Tue, 02 Aug 2022 18:29:25: 29000000 INFO @ Tue, 02 Aug 2022 18:29:26: 27000000 INFO @ Tue, 02 Aug 2022 18:29:28: 41000000 INFO @ Tue, 02 Aug 2022 18:29:30: 30000000 INFO @ Tue, 02 Aug 2022 18:29:31: 28000000 INFO @ Tue, 02 Aug 2022 18:29:32: 42000000 INFO @ Tue, 02 Aug 2022 18:29:35: 31000000 INFO @ Tue, 02 Aug 2022 18:29:35: 29000000 INFO @ Tue, 02 Aug 2022 18:29:37: 43000000 INFO @ Tue, 02 Aug 2022 18:29:40: 30000000 INFO @ Tue, 02 Aug 2022 18:29:40: 32000000 INFO @ Tue, 02 Aug 2022 18:29:41: 44000000 INFO @ Tue, 02 Aug 2022 18:29:44: 31000000 INFO @ Tue, 02 Aug 2022 18:29:45: 33000000 INFO @ Tue, 02 Aug 2022 18:29:46: 45000000 INFO @ Tue, 02 Aug 2022 18:29:49: 32000000 INFO @ Tue, 02 Aug 2022 18:29:50: 34000000 INFO @ Tue, 02 Aug 2022 18:29:51: 46000000 INFO @ Tue, 02 Aug 2022 18:29:53: 33000000 INFO @ Tue, 02 Aug 2022 18:29:55: 35000000 INFO @ Tue, 02 Aug 2022 18:29:55: 47000000 INFO @ Tue, 02 Aug 2022 18:29:57: 34000000 INFO @ Tue, 02 Aug 2022 18:30:00: 48000000 INFO @ Tue, 02 Aug 2022 18:30:00: 36000000 INFO @ Tue, 02 Aug 2022 18:30:02: 35000000 INFO @ Tue, 02 Aug 2022 18:30:04: 49000000 INFO @ Tue, 02 Aug 2022 18:30:05: 37000000 INFO @ Tue, 02 Aug 2022 18:30:06: 36000000 INFO @ Tue, 02 Aug 2022 18:30:09: 50000000 INFO @ Tue, 02 Aug 2022 18:30:10: 38000000 INFO @ Tue, 02 Aug 2022 18:30:11: 37000000 INFO @ Tue, 02 Aug 2022 18:30:13: 51000000 INFO @ Tue, 02 Aug 2022 18:30:15: 39000000 INFO @ Tue, 02 Aug 2022 18:30:15: 38000000 INFO @ Tue, 02 Aug 2022 18:30:17: 52000000 INFO @ Tue, 02 Aug 2022 18:30:20: 40000000 INFO @ Tue, 02 Aug 2022 18:30:20: 39000000 INFO @ Tue, 02 Aug 2022 18:30:22: 53000000 INFO @ Tue, 02 Aug 2022 18:30:24: 40000000 INFO @ Tue, 02 Aug 2022 18:30:25: 41000000 INFO @ Tue, 02 Aug 2022 18:30:26: 54000000 INFO @ Tue, 02 Aug 2022 18:30:29: 41000000 INFO @ Tue, 02 Aug 2022 18:30:30: 42000000 INFO @ Tue, 02 Aug 2022 18:30:31: 55000000 INFO @ Tue, 02 Aug 2022 18:30:33: 42000000 INFO @ Tue, 02 Aug 2022 18:30:35: 43000000 INFO @ Tue, 02 Aug 2022 18:30:35: 56000000 INFO @ Tue, 02 Aug 2022 18:30:38: 43000000 INFO @ Tue, 02 Aug 2022 18:30:40: 57000000 INFO @ Tue, 02 Aug 2022 18:30:40: 44000000 INFO @ Tue, 02 Aug 2022 18:30:42: 44000000 INFO @ Tue, 02 Aug 2022 18:30:44: 58000000 INFO @ Tue, 02 Aug 2022 18:30:45: 45000000 INFO @ Tue, 02 Aug 2022 18:30:47: 45000000 INFO @ Tue, 02 Aug 2022 18:30:49: 59000000 INFO @ Tue, 02 Aug 2022 18:30:50: 46000000 INFO @ Tue, 02 Aug 2022 18:30:51: 46000000 INFO @ Tue, 02 Aug 2022 18:30:53: 60000000 INFO @ Tue, 02 Aug 2022 18:30:55: 47000000 INFO @ Tue, 02 Aug 2022 18:30:56: 47000000 INFO @ Tue, 02 Aug 2022 18:30:58: 61000000 INFO @ Tue, 02 Aug 2022 18:31:00: 48000000 INFO @ Tue, 02 Aug 2022 18:31:01: 48000000 INFO @ Tue, 02 Aug 2022 18:31:02: 62000000 INFO @ Tue, 02 Aug 2022 18:31:05: 49000000 INFO @ Tue, 02 Aug 2022 18:31:06: 49000000 INFO @ Tue, 02 Aug 2022 18:31:07: 63000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:31:10: 50000000 INFO @ Tue, 02 Aug 2022 18:31:10: 50000000 INFO @ Tue, 02 Aug 2022 18:31:11: 64000000 INFO @ Tue, 02 Aug 2022 18:31:15: 51000000 INFO @ Tue, 02 Aug 2022 18:31:15: 51000000 INFO @ Tue, 02 Aug 2022 18:31:16: 65000000 INFO @ Tue, 02 Aug 2022 18:31:20: 52000000 INFO @ Tue, 02 Aug 2022 18:31:20: 52000000 INFO @ Tue, 02 Aug 2022 18:31:20: 66000000 INFO @ Tue, 02 Aug 2022 18:31:25: 53000000 INFO @ Tue, 02 Aug 2022 18:31:25: 67000000 INFO @ Tue, 02 Aug 2022 18:31:25: 53000000 INFO @ Tue, 02 Aug 2022 18:31:29: 68000000 INFO @ Tue, 02 Aug 2022 18:31:30: 54000000 INFO @ Tue, 02 Aug 2022 18:31:30: 54000000 INFO @ Tue, 02 Aug 2022 18:31:32: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:31:32: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:31:32: #1 total tags in treatment: 25774028 INFO @ Tue, 02 Aug 2022 18:31:32: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:31:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:31:32: #1 tags after filtering in treatment: 15972028 INFO @ Tue, 02 Aug 2022 18:31:32: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 18:31:32: #1 finished! INFO @ Tue, 02 Aug 2022 18:31:32: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:31:32: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:31:34: #2 number of paired peaks: 1271 INFO @ Tue, 02 Aug 2022 18:31:34: start model_add_line... INFO @ Tue, 02 Aug 2022 18:31:34: start X-correlation... INFO @ Tue, 02 Aug 2022 18:31:34: end of X-cor INFO @ Tue, 02 Aug 2022 18:31:34: #2 finished! INFO @ Tue, 02 Aug 2022 18:31:34: #2 predicted fragment length is 72 bps INFO @ Tue, 02 Aug 2022 18:31:34: #2 alternative fragment length(s) may be 4,72 bps INFO @ Tue, 02 Aug 2022 18:31:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.05_model.r WARNING @ Tue, 02 Aug 2022 18:31:34: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:31:34: #2 You may need to consider one of the other alternative d(s): 4,72 WARNING @ Tue, 02 Aug 2022 18:31:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:31:34: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:31:34: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:31:35: 55000000 INFO @ Tue, 02 Aug 2022 18:31:35: 55000000 INFO @ Tue, 02 Aug 2022 18:31:40: 56000000 INFO @ Tue, 02 Aug 2022 18:31:40: 56000000 INFO @ Tue, 02 Aug 2022 18:31:45: 57000000 INFO @ Tue, 02 Aug 2022 18:31:45: 57000000 INFO @ Tue, 02 Aug 2022 18:31:50: 58000000 INFO @ Tue, 02 Aug 2022 18:31:50: 58000000 INFO @ Tue, 02 Aug 2022 18:31:55: 59000000 INFO @ Tue, 02 Aug 2022 18:31:56: 59000000 INFO @ Tue, 02 Aug 2022 18:32:00: 60000000 INFO @ Tue, 02 Aug 2022 18:32:01: 60000000 INFO @ Tue, 02 Aug 2022 18:32:04: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:32:05: 61000000 INFO @ Tue, 02 Aug 2022 18:32:06: 61000000 INFO @ Tue, 02 Aug 2022 18:32:10: 62000000 INFO @ Tue, 02 Aug 2022 18:32:11: 62000000 INFO @ Tue, 02 Aug 2022 18:32:15: 63000000 INFO @ Tue, 02 Aug 2022 18:32:16: 63000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:32:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:32:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:32:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.05_summits.bed INFO @ Tue, 02 Aug 2022 18:32:19: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (21252 records, 4 fields): 66 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:32:20: 64000000 INFO @ Tue, 02 Aug 2022 18:32:21: 64000000 INFO @ Tue, 02 Aug 2022 18:32:25: 65000000 INFO @ Tue, 02 Aug 2022 18:32:26: 65000000 INFO @ Tue, 02 Aug 2022 18:32:31: 66000000 INFO @ Tue, 02 Aug 2022 18:32:31: 66000000 INFO @ Tue, 02 Aug 2022 18:32:36: 67000000 INFO @ Tue, 02 Aug 2022 18:32:36: 67000000 INFO @ Tue, 02 Aug 2022 18:32:41: 68000000 INFO @ Tue, 02 Aug 2022 18:32:42: 68000000 INFO @ Tue, 02 Aug 2022 18:32:44: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:32:44: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:32:44: #1 total tags in treatment: 25774028 INFO @ Tue, 02 Aug 2022 18:32:44: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:32:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:32:44: #1 tags after filtering in treatment: 15972028 INFO @ Tue, 02 Aug 2022 18:32:44: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 18:32:44: #1 finished! INFO @ Tue, 02 Aug 2022 18:32:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:32:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:32:44: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:32:44: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:32:44: #1 total tags in treatment: 25774028 INFO @ Tue, 02 Aug 2022 18:32:44: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:32:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:32:45: #1 tags after filtering in treatment: 15972028 INFO @ Tue, 02 Aug 2022 18:32:45: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 18:32:45: #1 finished! INFO @ Tue, 02 Aug 2022 18:32:45: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:32:45: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:32:45: #2 number of paired peaks: 1271 INFO @ Tue, 02 Aug 2022 18:32:45: start model_add_line... INFO @ Tue, 02 Aug 2022 18:32:46: start X-correlation... INFO @ Tue, 02 Aug 2022 18:32:46: end of X-cor INFO @ Tue, 02 Aug 2022 18:32:46: #2 finished! INFO @ Tue, 02 Aug 2022 18:32:46: #2 predicted fragment length is 72 bps INFO @ Tue, 02 Aug 2022 18:32:46: #2 alternative fragment length(s) may be 4,72 bps INFO @ Tue, 02 Aug 2022 18:32:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.10_model.r WARNING @ Tue, 02 Aug 2022 18:32:46: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:32:46: #2 You may need to consider one of the other alternative d(s): 4,72 WARNING @ Tue, 02 Aug 2022 18:32:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:32:46: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:32:46: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:32:46: #2 number of paired peaks: 1271 INFO @ Tue, 02 Aug 2022 18:32:46: start model_add_line... INFO @ Tue, 02 Aug 2022 18:32:46: start X-correlation... INFO @ Tue, 02 Aug 2022 18:32:46: end of X-cor INFO @ Tue, 02 Aug 2022 18:32:46: #2 finished! INFO @ Tue, 02 Aug 2022 18:32:46: #2 predicted fragment length is 72 bps INFO @ Tue, 02 Aug 2022 18:32:46: #2 alternative fragment length(s) may be 4,72 bps INFO @ Tue, 02 Aug 2022 18:32:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.20_model.r WARNING @ Tue, 02 Aug 2022 18:32:46: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:32:46: #2 You may need to consider one of the other alternative d(s): 4,72 WARNING @ Tue, 02 Aug 2022 18:32:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:32:46: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:32:46: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:33:14: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:33:15: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:33:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:33:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:33:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.20_summits.bed INFO @ Tue, 02 Aug 2022 18:33:29: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (2605 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:33:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:33:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:33:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178822/SRX12178822.10_summits.bed INFO @ Tue, 02 Aug 2022 18:33:31: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (11918 records, 4 fields): 24 millis CompletedMACS2peakCalling