Job ID = 16440114 SRX = SRX12178817 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:13:49 prefetch.2.10.7: 1) Downloading 'SRR15888097'... 2022-08-02T08:13:49 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:15:55 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:15:55 prefetch.2.10.7: 1) 'SRR15888097' was downloaded successfully 2022-08-02T08:15:55 prefetch.2.10.7: 'SRR15888097' has 0 unresolved dependencies Read 43650073 spots for SRR15888097/SRR15888097.sra Written 43650073 spots for SRR15888097/SRR15888097.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440827 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:33:06 43650073 reads; of these: 43650073 (100.00%) were paired; of these: 15853732 (36.32%) aligned concordantly 0 times 23758593 (54.43%) aligned concordantly exactly 1 time 4037748 (9.25%) aligned concordantly >1 times ---- 15853732 pairs aligned concordantly 0 times; of these: 4189183 (26.42%) aligned discordantly 1 time ---- 11664549 pairs aligned 0 times concordantly or discordantly; of these: 23329098 mates make up the pairs; of these: 18932316 (81.15%) aligned 0 times 3169076 (13.58%) aligned exactly 1 time 1227706 (5.26%) aligned >1 times 78.31% overall alignment rate Time searching: 00:33:07 Overall time: 00:33:07 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9969727 / 31843207 = 0.3131 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:07:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:07:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:07:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:07:28: 1000000 INFO @ Tue, 02 Aug 2022 18:07:33: 2000000 INFO @ Tue, 02 Aug 2022 18:07:38: 3000000 INFO @ Tue, 02 Aug 2022 18:07:43: 4000000 INFO @ Tue, 02 Aug 2022 18:07:48: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:07:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:07:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:07:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:07:53: 6000000 INFO @ Tue, 02 Aug 2022 18:07:58: 7000000 INFO @ Tue, 02 Aug 2022 18:07:58: 1000000 INFO @ Tue, 02 Aug 2022 18:08:04: 8000000 INFO @ Tue, 02 Aug 2022 18:08:04: 2000000 INFO @ Tue, 02 Aug 2022 18:08:09: 9000000 INFO @ Tue, 02 Aug 2022 18:08:09: 3000000 INFO @ Tue, 02 Aug 2022 18:08:15: 10000000 INFO @ Tue, 02 Aug 2022 18:08:15: 4000000 INFO @ Tue, 02 Aug 2022 18:08:20: 11000000 INFO @ Tue, 02 Aug 2022 18:08:20: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:08:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:08:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:08:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:08:26: 12000000 INFO @ Tue, 02 Aug 2022 18:08:26: 6000000 INFO @ Tue, 02 Aug 2022 18:08:30: 1000000 INFO @ Tue, 02 Aug 2022 18:08:32: 13000000 INFO @ Tue, 02 Aug 2022 18:08:32: 7000000 INFO @ Tue, 02 Aug 2022 18:08:36: 2000000 INFO @ Tue, 02 Aug 2022 18:08:38: 14000000 INFO @ Tue, 02 Aug 2022 18:08:38: 8000000 INFO @ Tue, 02 Aug 2022 18:08:43: 3000000 INFO @ Tue, 02 Aug 2022 18:08:44: 15000000 INFO @ Tue, 02 Aug 2022 18:08:44: 9000000 INFO @ Tue, 02 Aug 2022 18:08:50: 4000000 INFO @ Tue, 02 Aug 2022 18:08:50: 16000000 INFO @ Tue, 02 Aug 2022 18:08:50: 10000000 INFO @ Tue, 02 Aug 2022 18:08:56: 17000000 INFO @ Tue, 02 Aug 2022 18:08:56: 11000000 INFO @ Tue, 02 Aug 2022 18:08:57: 5000000 INFO @ Tue, 02 Aug 2022 18:09:02: 18000000 INFO @ Tue, 02 Aug 2022 18:09:03: 12000000 INFO @ Tue, 02 Aug 2022 18:09:03: 6000000 INFO @ Tue, 02 Aug 2022 18:09:08: 19000000 INFO @ Tue, 02 Aug 2022 18:09:09: 13000000 INFO @ Tue, 02 Aug 2022 18:09:10: 7000000 INFO @ Tue, 02 Aug 2022 18:09:14: 20000000 INFO @ Tue, 02 Aug 2022 18:09:15: 14000000 INFO @ Tue, 02 Aug 2022 18:09:17: 8000000 INFO @ Tue, 02 Aug 2022 18:09:20: 21000000 INFO @ Tue, 02 Aug 2022 18:09:21: 15000000 INFO @ Tue, 02 Aug 2022 18:09:24: 9000000 INFO @ Tue, 02 Aug 2022 18:09:26: 22000000 INFO @ Tue, 02 Aug 2022 18:09:26: 16000000 INFO @ Tue, 02 Aug 2022 18:09:30: 10000000 INFO @ Tue, 02 Aug 2022 18:09:32: 23000000 INFO @ Tue, 02 Aug 2022 18:09:32: 17000000 INFO @ Tue, 02 Aug 2022 18:09:37: 11000000 INFO @ Tue, 02 Aug 2022 18:09:38: 18000000 INFO @ Tue, 02 Aug 2022 18:09:39: 24000000 INFO @ Tue, 02 Aug 2022 18:09:44: 12000000 INFO @ Tue, 02 Aug 2022 18:09:44: 19000000 INFO @ Tue, 02 Aug 2022 18:09:45: 25000000 INFO @ Tue, 02 Aug 2022 18:09:50: 13000000 INFO @ Tue, 02 Aug 2022 18:09:50: 20000000 INFO @ Tue, 02 Aug 2022 18:09:51: 26000000 INFO @ Tue, 02 Aug 2022 18:09:56: 21000000 INFO @ Tue, 02 Aug 2022 18:09:57: 14000000 INFO @ Tue, 02 Aug 2022 18:09:57: 27000000 INFO @ Tue, 02 Aug 2022 18:10:02: 22000000 INFO @ Tue, 02 Aug 2022 18:10:03: 28000000 INFO @ Tue, 02 Aug 2022 18:10:03: 15000000 INFO @ Tue, 02 Aug 2022 18:10:08: 23000000 INFO @ Tue, 02 Aug 2022 18:10:09: 29000000 INFO @ Tue, 02 Aug 2022 18:10:10: 16000000 INFO @ Tue, 02 Aug 2022 18:10:15: 24000000 INFO @ Tue, 02 Aug 2022 18:10:15: 30000000 INFO @ Tue, 02 Aug 2022 18:10:16: 17000000 INFO @ Tue, 02 Aug 2022 18:10:21: 25000000 INFO @ Tue, 02 Aug 2022 18:10:21: 31000000 INFO @ Tue, 02 Aug 2022 18:10:23: 18000000 INFO @ Tue, 02 Aug 2022 18:10:27: 26000000 INFO @ Tue, 02 Aug 2022 18:10:27: 32000000 INFO @ Tue, 02 Aug 2022 18:10:29: 19000000 INFO @ Tue, 02 Aug 2022 18:10:33: 27000000 INFO @ Tue, 02 Aug 2022 18:10:33: 33000000 INFO @ Tue, 02 Aug 2022 18:10:36: 20000000 INFO @ Tue, 02 Aug 2022 18:10:39: 28000000 INFO @ Tue, 02 Aug 2022 18:10:39: 34000000 INFO @ Tue, 02 Aug 2022 18:10:42: 21000000 INFO @ Tue, 02 Aug 2022 18:10:45: 29000000 INFO @ Tue, 02 Aug 2022 18:10:45: 35000000 INFO @ Tue, 02 Aug 2022 18:10:49: 22000000 INFO @ Tue, 02 Aug 2022 18:10:51: 30000000 INFO @ Tue, 02 Aug 2022 18:10:51: 36000000 INFO @ Tue, 02 Aug 2022 18:10:56: 23000000 INFO @ Tue, 02 Aug 2022 18:10:57: 31000000 INFO @ Tue, 02 Aug 2022 18:10:57: 37000000 INFO @ Tue, 02 Aug 2022 18:11:03: 24000000 INFO @ Tue, 02 Aug 2022 18:11:03: 32000000 INFO @ Tue, 02 Aug 2022 18:11:03: 38000000 INFO @ Tue, 02 Aug 2022 18:11:09: 33000000 INFO @ Tue, 02 Aug 2022 18:11:10: 39000000 INFO @ Tue, 02 Aug 2022 18:11:10: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:11:16: 34000000 INFO @ Tue, 02 Aug 2022 18:11:16: 40000000 INFO @ Tue, 02 Aug 2022 18:11:17: 26000000 INFO @ Tue, 02 Aug 2022 18:11:22: 35000000 INFO @ Tue, 02 Aug 2022 18:11:22: 41000000 INFO @ Tue, 02 Aug 2022 18:11:23: 27000000 INFO @ Tue, 02 Aug 2022 18:11:28: 36000000 INFO @ Tue, 02 Aug 2022 18:11:28: 42000000 INFO @ Tue, 02 Aug 2022 18:11:30: 28000000 INFO @ Tue, 02 Aug 2022 18:11:34: 37000000 INFO @ Tue, 02 Aug 2022 18:11:34: 43000000 INFO @ Tue, 02 Aug 2022 18:11:37: 29000000 INFO @ Tue, 02 Aug 2022 18:11:40: 38000000 INFO @ Tue, 02 Aug 2022 18:11:41: 44000000 INFO @ Tue, 02 Aug 2022 18:11:43: 30000000 INFO @ Tue, 02 Aug 2022 18:11:47: 45000000 INFO @ Tue, 02 Aug 2022 18:11:47: 39000000 INFO @ Tue, 02 Aug 2022 18:11:50: 31000000 INFO @ Tue, 02 Aug 2022 18:11:53: 40000000 INFO @ Tue, 02 Aug 2022 18:11:53: 46000000 INFO @ Tue, 02 Aug 2022 18:11:57: 32000000 INFO @ Tue, 02 Aug 2022 18:11:59: 41000000 INFO @ Tue, 02 Aug 2022 18:11:59: 47000000 INFO @ Tue, 02 Aug 2022 18:12:04: 33000000 INFO @ Tue, 02 Aug 2022 18:12:05: 42000000 INFO @ Tue, 02 Aug 2022 18:12:05: 48000000 INFO @ Tue, 02 Aug 2022 18:12:08: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:12:08: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:12:08: #1 total tags in treatment: 18782980 INFO @ Tue, 02 Aug 2022 18:12:08: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:12:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:12:08: #1 tags after filtering in treatment: 12947126 INFO @ Tue, 02 Aug 2022 18:12:08: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 18:12:08: #1 finished! INFO @ Tue, 02 Aug 2022 18:12:08: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:12:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:12:09: #2 number of paired peaks: 1377 INFO @ Tue, 02 Aug 2022 18:12:09: start model_add_line... INFO @ Tue, 02 Aug 2022 18:12:10: start X-correlation... INFO @ Tue, 02 Aug 2022 18:12:10: end of X-cor INFO @ Tue, 02 Aug 2022 18:12:10: #2 finished! INFO @ Tue, 02 Aug 2022 18:12:10: #2 predicted fragment length is 56 bps INFO @ Tue, 02 Aug 2022 18:12:10: #2 alternative fragment length(s) may be 56 bps INFO @ Tue, 02 Aug 2022 18:12:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.05_model.r WARNING @ Tue, 02 Aug 2022 18:12:10: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:12:10: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Tue, 02 Aug 2022 18:12:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:12:10: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:12:10: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:12:10: 34000000 INFO @ Tue, 02 Aug 2022 18:12:11: 43000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:12:17: 35000000 INFO @ Tue, 02 Aug 2022 18:12:17: 44000000 INFO @ Tue, 02 Aug 2022 18:12:23: 45000000 INFO @ Tue, 02 Aug 2022 18:12:23: 36000000 INFO @ Tue, 02 Aug 2022 18:12:29: 46000000 INFO @ Tue, 02 Aug 2022 18:12:30: 37000000 INFO @ Tue, 02 Aug 2022 18:12:34: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:12:35: 47000000 INFO @ Tue, 02 Aug 2022 18:12:37: 38000000 INFO @ Tue, 02 Aug 2022 18:12:41: 48000000 INFO @ Tue, 02 Aug 2022 18:12:43: 39000000 INFO @ Tue, 02 Aug 2022 18:12:44: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:12:44: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:12:44: #1 total tags in treatment: 18782980 INFO @ Tue, 02 Aug 2022 18:12:44: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:12:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:12:44: #1 tags after filtering in treatment: 12947126 INFO @ Tue, 02 Aug 2022 18:12:44: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 18:12:44: #1 finished! INFO @ Tue, 02 Aug 2022 18:12:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:12:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:12:45: #2 number of paired peaks: 1377 INFO @ Tue, 02 Aug 2022 18:12:45: start model_add_line... INFO @ Tue, 02 Aug 2022 18:12:45: start X-correlation... INFO @ Tue, 02 Aug 2022 18:12:45: end of X-cor INFO @ Tue, 02 Aug 2022 18:12:45: #2 finished! INFO @ Tue, 02 Aug 2022 18:12:45: #2 predicted fragment length is 56 bps INFO @ Tue, 02 Aug 2022 18:12:45: #2 alternative fragment length(s) may be 56 bps INFO @ Tue, 02 Aug 2022 18:12:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.10_model.r WARNING @ Tue, 02 Aug 2022 18:12:45: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:12:45: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Tue, 02 Aug 2022 18:12:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:12:45: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:12:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:12:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:12:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:12:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.05_summits.bed INFO @ Tue, 02 Aug 2022 18:12:47: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (18668 records, 4 fields): 31 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:12:50: 40000000 INFO @ Tue, 02 Aug 2022 18:12:56: 41000000 INFO @ Tue, 02 Aug 2022 18:13:02: 42000000 INFO @ Tue, 02 Aug 2022 18:13:08: 43000000 INFO @ Tue, 02 Aug 2022 18:13:09: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:13:14: 44000000 INFO @ Tue, 02 Aug 2022 18:13:20: 45000000 INFO @ Tue, 02 Aug 2022 18:13:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:13:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:13:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.10_summits.bed INFO @ Tue, 02 Aug 2022 18:13:22: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (9666 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:13:26: 46000000 INFO @ Tue, 02 Aug 2022 18:13:32: 47000000 INFO @ Tue, 02 Aug 2022 18:13:38: 48000000 INFO @ Tue, 02 Aug 2022 18:13:41: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:13:41: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:13:41: #1 total tags in treatment: 18782980 INFO @ Tue, 02 Aug 2022 18:13:41: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:13:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:13:41: #1 tags after filtering in treatment: 12947126 INFO @ Tue, 02 Aug 2022 18:13:41: #1 Redundant rate of treatment: 0.31 INFO @ Tue, 02 Aug 2022 18:13:41: #1 finished! INFO @ Tue, 02 Aug 2022 18:13:41: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:13:41: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:13:42: #2 number of paired peaks: 1377 INFO @ Tue, 02 Aug 2022 18:13:42: start model_add_line... INFO @ Tue, 02 Aug 2022 18:13:42: start X-correlation... INFO @ Tue, 02 Aug 2022 18:13:42: end of X-cor INFO @ Tue, 02 Aug 2022 18:13:42: #2 finished! INFO @ Tue, 02 Aug 2022 18:13:42: #2 predicted fragment length is 56 bps INFO @ Tue, 02 Aug 2022 18:13:42: #2 alternative fragment length(s) may be 56 bps INFO @ Tue, 02 Aug 2022 18:13:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.20_model.r WARNING @ Tue, 02 Aug 2022 18:13:42: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:13:42: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Tue, 02 Aug 2022 18:13:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:13:42: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:13:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:14:07: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:14:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:14:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:14:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178817/SRX12178817.20_summits.bed INFO @ Tue, 02 Aug 2022 18:14:19: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1477 records, 4 fields): 15 millis CompletedMACS2peakCalling