Job ID = 16440106 SRX = SRX12178810 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:10:38 prefetch.2.10.7: 1) Downloading 'SRR15888104'... 2022-08-02T08:10:38 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:12:27 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:12:27 prefetch.2.10.7: 1) 'SRR15888104' was downloaded successfully 2022-08-02T08:12:27 prefetch.2.10.7: 'SRR15888104' has 0 unresolved dependencies Read 33965415 spots for SRR15888104/SRR15888104.sra Written 33965415 spots for SRR15888104/SRR15888104.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440966 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:55:49 33965415 reads; of these: 33965415 (100.00%) were paired; of these: 10550336 (31.06%) aligned concordantly 0 times 20360531 (59.94%) aligned concordantly exactly 1 time 3054548 (8.99%) aligned concordantly >1 times ---- 10550336 pairs aligned concordantly 0 times; of these: 4395494 (41.66%) aligned discordantly 1 time ---- 6154842 pairs aligned 0 times concordantly or discordantly; of these: 12309684 mates make up the pairs; of these: 7005409 (56.91%) aligned 0 times 3920852 (31.85%) aligned exactly 1 time 1383423 (11.24%) aligned >1 times 89.69% overall alignment rate Time searching: 00:55:49 Overall time: 00:55:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4052554 / 27725729 = 0.1462 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:35:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:35:49: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:35:49: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:36:00: 1000000 INFO @ Tue, 02 Aug 2022 18:36:12: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:36:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:36:19: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:36:19: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:36:25: 3000000 INFO @ Tue, 02 Aug 2022 18:36:33: 1000000 INFO @ Tue, 02 Aug 2022 18:36:38: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:36:47: 2000000 INFO @ Tue, 02 Aug 2022 18:36:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:36:49: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:36:49: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:36:51: 5000000 INFO @ Tue, 02 Aug 2022 18:37:01: 1000000 INFO @ Tue, 02 Aug 2022 18:37:01: 3000000 INFO @ Tue, 02 Aug 2022 18:37:04: 6000000 INFO @ Tue, 02 Aug 2022 18:37:13: 2000000 INFO @ Tue, 02 Aug 2022 18:37:14: 4000000 INFO @ Tue, 02 Aug 2022 18:37:17: 7000000 INFO @ Tue, 02 Aug 2022 18:37:24: 3000000 INFO @ Tue, 02 Aug 2022 18:37:28: 5000000 INFO @ Tue, 02 Aug 2022 18:37:31: 8000000 INFO @ Tue, 02 Aug 2022 18:37:36: 4000000 INFO @ Tue, 02 Aug 2022 18:37:41: 6000000 INFO @ Tue, 02 Aug 2022 18:37:45: 9000000 INFO @ Tue, 02 Aug 2022 18:37:48: 5000000 INFO @ Tue, 02 Aug 2022 18:37:55: 7000000 INFO @ Tue, 02 Aug 2022 18:37:58: 10000000 INFO @ Tue, 02 Aug 2022 18:38:00: 6000000 INFO @ Tue, 02 Aug 2022 18:38:08: 8000000 INFO @ Tue, 02 Aug 2022 18:38:12: 11000000 INFO @ Tue, 02 Aug 2022 18:38:12: 7000000 INFO @ Tue, 02 Aug 2022 18:38:22: 9000000 INFO @ Tue, 02 Aug 2022 18:38:24: 8000000 INFO @ Tue, 02 Aug 2022 18:38:25: 12000000 INFO @ Tue, 02 Aug 2022 18:38:35: 10000000 INFO @ Tue, 02 Aug 2022 18:38:35: 9000000 INFO @ Tue, 02 Aug 2022 18:38:39: 13000000 INFO @ Tue, 02 Aug 2022 18:38:47: 10000000 INFO @ Tue, 02 Aug 2022 18:38:49: 11000000 INFO @ Tue, 02 Aug 2022 18:38:53: 14000000 INFO @ Tue, 02 Aug 2022 18:38:59: 11000000 INFO @ Tue, 02 Aug 2022 18:39:02: 12000000 INFO @ Tue, 02 Aug 2022 18:39:07: 15000000 INFO @ Tue, 02 Aug 2022 18:39:10: 12000000 INFO @ Tue, 02 Aug 2022 18:39:15: 13000000 INFO @ Tue, 02 Aug 2022 18:39:21: 16000000 INFO @ Tue, 02 Aug 2022 18:39:22: 13000000 INFO @ Tue, 02 Aug 2022 18:39:29: 14000000 INFO @ Tue, 02 Aug 2022 18:39:34: 14000000 INFO @ Tue, 02 Aug 2022 18:39:35: 17000000 INFO @ Tue, 02 Aug 2022 18:39:44: 15000000 INFO @ Tue, 02 Aug 2022 18:39:46: 15000000 INFO @ Tue, 02 Aug 2022 18:39:48: 18000000 INFO @ Tue, 02 Aug 2022 18:39:57: 16000000 INFO @ Tue, 02 Aug 2022 18:39:58: 16000000 INFO @ Tue, 02 Aug 2022 18:40:01: 19000000 INFO @ Tue, 02 Aug 2022 18:40:10: 17000000 INFO @ Tue, 02 Aug 2022 18:40:11: 17000000 INFO @ Tue, 02 Aug 2022 18:40:14: 20000000 INFO @ Tue, 02 Aug 2022 18:40:23: 18000000 INFO @ Tue, 02 Aug 2022 18:40:24: 18000000 INFO @ Tue, 02 Aug 2022 18:40:27: 21000000 INFO @ Tue, 02 Aug 2022 18:40:36: 19000000 INFO @ Tue, 02 Aug 2022 18:40:37: 19000000 INFO @ Tue, 02 Aug 2022 18:40:39: 22000000 INFO @ Tue, 02 Aug 2022 18:40:48: 20000000 INFO @ Tue, 02 Aug 2022 18:40:51: 20000000 INFO @ Tue, 02 Aug 2022 18:40:52: 23000000 INFO @ Tue, 02 Aug 2022 18:41:00: 21000000 INFO @ Tue, 02 Aug 2022 18:41:04: 21000000 INFO @ Tue, 02 Aug 2022 18:41:04: 24000000 INFO @ Tue, 02 Aug 2022 18:41:12: 22000000 INFO @ Tue, 02 Aug 2022 18:41:17: 22000000 INFO @ Tue, 02 Aug 2022 18:41:17: 25000000 INFO @ Tue, 02 Aug 2022 18:41:23: 23000000 INFO @ Tue, 02 Aug 2022 18:41:30: 26000000 INFO @ Tue, 02 Aug 2022 18:41:31: 23000000 INFO @ Tue, 02 Aug 2022 18:41:35: 24000000 INFO @ Tue, 02 Aug 2022 18:41:43: 27000000 INFO @ Tue, 02 Aug 2022 18:41:44: 24000000 INFO @ Tue, 02 Aug 2022 18:41:47: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:41:56: 28000000 INFO @ Tue, 02 Aug 2022 18:41:58: 25000000 INFO @ Tue, 02 Aug 2022 18:41:58: 26000000 INFO @ Tue, 02 Aug 2022 18:42:10: 29000000 INFO @ Tue, 02 Aug 2022 18:42:10: 27000000 INFO @ Tue, 02 Aug 2022 18:42:12: 26000000 INFO @ Tue, 02 Aug 2022 18:42:22: 30000000 INFO @ Tue, 02 Aug 2022 18:42:23: 28000000 INFO @ Tue, 02 Aug 2022 18:42:26: 27000000 INFO @ Tue, 02 Aug 2022 18:42:35: 31000000 INFO @ Tue, 02 Aug 2022 18:42:35: 29000000 INFO @ Tue, 02 Aug 2022 18:42:40: 28000000 INFO @ Tue, 02 Aug 2022 18:42:47: 30000000 INFO @ Tue, 02 Aug 2022 18:42:47: 32000000 INFO @ Tue, 02 Aug 2022 18:42:53: 29000000 INFO @ Tue, 02 Aug 2022 18:42:58: 31000000 INFO @ Tue, 02 Aug 2022 18:42:59: 33000000 INFO @ Tue, 02 Aug 2022 18:43:07: 30000000 INFO @ Tue, 02 Aug 2022 18:43:10: 32000000 INFO @ Tue, 02 Aug 2022 18:43:11: 34000000 INFO @ Tue, 02 Aug 2022 18:43:20: 33000000 INFO @ Tue, 02 Aug 2022 18:43:20: 31000000 INFO @ Tue, 02 Aug 2022 18:43:23: 35000000 INFO @ Tue, 02 Aug 2022 18:43:32: 34000000 INFO @ Tue, 02 Aug 2022 18:43:34: 32000000 INFO @ Tue, 02 Aug 2022 18:43:35: 36000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:43:43: 35000000 INFO @ Tue, 02 Aug 2022 18:43:47: 37000000 INFO @ Tue, 02 Aug 2022 18:43:47: 33000000 INFO @ Tue, 02 Aug 2022 18:43:54: 36000000 INFO @ Tue, 02 Aug 2022 18:43:59: 38000000 INFO @ Tue, 02 Aug 2022 18:44:00: 34000000 INFO @ Tue, 02 Aug 2022 18:44:05: 37000000 INFO @ Tue, 02 Aug 2022 18:44:13: 39000000 INFO @ Tue, 02 Aug 2022 18:44:14: 35000000 INFO @ Tue, 02 Aug 2022 18:44:16: 38000000 INFO @ Tue, 02 Aug 2022 18:44:25: 40000000 INFO @ Tue, 02 Aug 2022 18:44:27: 36000000 INFO @ Tue, 02 Aug 2022 18:44:27: 39000000 INFO @ Tue, 02 Aug 2022 18:44:37: 41000000 INFO @ Tue, 02 Aug 2022 18:44:38: 40000000 INFO @ Tue, 02 Aug 2022 18:44:39: 37000000 INFO @ Tue, 02 Aug 2022 18:44:48: 42000000 INFO @ Tue, 02 Aug 2022 18:44:50: 41000000 INFO @ Tue, 02 Aug 2022 18:44:52: 38000000 INFO @ Tue, 02 Aug 2022 18:45:00: 43000000 INFO @ Tue, 02 Aug 2022 18:45:02: 42000000 INFO @ Tue, 02 Aug 2022 18:45:05: 39000000 INFO @ Tue, 02 Aug 2022 18:45:11: 44000000 INFO @ Tue, 02 Aug 2022 18:45:13: 43000000 INFO @ Tue, 02 Aug 2022 18:45:19: 40000000 INFO @ Tue, 02 Aug 2022 18:45:23: 45000000 INFO @ Tue, 02 Aug 2022 18:45:25: 44000000 INFO @ Tue, 02 Aug 2022 18:45:33: 41000000 INFO @ Tue, 02 Aug 2022 18:45:34: 46000000 INFO @ Tue, 02 Aug 2022 18:45:36: 45000000 INFO @ Tue, 02 Aug 2022 18:45:47: 42000000 INFO @ Tue, 02 Aug 2022 18:45:47: 47000000 INFO @ Tue, 02 Aug 2022 18:45:48: 46000000 INFO @ Tue, 02 Aug 2022 18:45:58: 48000000 INFO @ Tue, 02 Aug 2022 18:46:00: 47000000 INFO @ Tue, 02 Aug 2022 18:46:00: 43000000 INFO @ Tue, 02 Aug 2022 18:46:10: 49000000 INFO @ Tue, 02 Aug 2022 18:46:11: 48000000 INFO @ Tue, 02 Aug 2022 18:46:13: 44000000 INFO @ Tue, 02 Aug 2022 18:46:22: 50000000 INFO @ Tue, 02 Aug 2022 18:46:22: 49000000 INFO @ Tue, 02 Aug 2022 18:46:26: 45000000 INFO @ Tue, 02 Aug 2022 18:46:33: 51000000 INFO @ Tue, 02 Aug 2022 18:46:34: 50000000 INFO @ Tue, 02 Aug 2022 18:46:39: 46000000 INFO @ Tue, 02 Aug 2022 18:46:45: 52000000 INFO @ Tue, 02 Aug 2022 18:46:46: 51000000 INFO @ Tue, 02 Aug 2022 18:46:53: 47000000 INFO @ Tue, 02 Aug 2022 18:46:55: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:46:55: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:46:55: #1 total tags in treatment: 19781339 INFO @ Tue, 02 Aug 2022 18:46:55: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:46:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:46:56: #1 tags after filtering in treatment: 13368325 INFO @ Tue, 02 Aug 2022 18:46:56: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 18:46:56: #1 finished! INFO @ Tue, 02 Aug 2022 18:46:56: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:46:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:46:57: #2 number of paired peaks: 1516 INFO @ Tue, 02 Aug 2022 18:46:57: start model_add_line... INFO @ Tue, 02 Aug 2022 18:46:58: 52000000 INFO @ Tue, 02 Aug 2022 18:46:58: start X-correlation... INFO @ Tue, 02 Aug 2022 18:46:58: end of X-cor INFO @ Tue, 02 Aug 2022 18:46:58: #2 finished! INFO @ Tue, 02 Aug 2022 18:46:58: #2 predicted fragment length is 63 bps INFO @ Tue, 02 Aug 2022 18:46:58: #2 alternative fragment length(s) may be 4,63 bps INFO @ Tue, 02 Aug 2022 18:46:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.05_model.r WARNING @ Tue, 02 Aug 2022 18:46:58: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:46:58: #2 You may need to consider one of the other alternative d(s): 4,63 WARNING @ Tue, 02 Aug 2022 18:46:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:46:58: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:46:58: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:47:06: 48000000 INFO @ Tue, 02 Aug 2022 18:47:07: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:47:07: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:47:07: #1 total tags in treatment: 19781339 INFO @ Tue, 02 Aug 2022 18:47:07: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:47:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:47:08: #1 tags after filtering in treatment: 13368325 INFO @ Tue, 02 Aug 2022 18:47:08: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 18:47:08: #1 finished! INFO @ Tue, 02 Aug 2022 18:47:08: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:47:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:47:09: #2 number of paired peaks: 1516 INFO @ Tue, 02 Aug 2022 18:47:09: start model_add_line... INFO @ Tue, 02 Aug 2022 18:47:09: start X-correlation... INFO @ Tue, 02 Aug 2022 18:47:09: end of X-cor INFO @ Tue, 02 Aug 2022 18:47:09: #2 finished! INFO @ Tue, 02 Aug 2022 18:47:09: #2 predicted fragment length is 63 bps INFO @ Tue, 02 Aug 2022 18:47:09: #2 alternative fragment length(s) may be 4,63 bps INFO @ Tue, 02 Aug 2022 18:47:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.20_model.r WARNING @ Tue, 02 Aug 2022 18:47:10: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:47:10: #2 You may need to consider one of the other alternative d(s): 4,63 WARNING @ Tue, 02 Aug 2022 18:47:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:47:10: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:47:10: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:47:19: 49000000 INFO @ Tue, 02 Aug 2022 18:47:32: 50000000 INFO @ Tue, 02 Aug 2022 18:47:40: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:47:45: 51000000 INFO @ Tue, 02 Aug 2022 18:47:53: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:47:58: 52000000 INFO @ Tue, 02 Aug 2022 18:48:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:48:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:48:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.05_summits.bed INFO @ Tue, 02 Aug 2022 18:48:04: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (18831 records, 4 fields): 42 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:48:09: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:48:09: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:48:09: #1 total tags in treatment: 19781339 INFO @ Tue, 02 Aug 2022 18:48:09: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:48:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:48:09: #1 tags after filtering in treatment: 13368325 INFO @ Tue, 02 Aug 2022 18:48:09: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 18:48:09: #1 finished! INFO @ Tue, 02 Aug 2022 18:48:09: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:48:09: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:48:11: #2 number of paired peaks: 1516 INFO @ Tue, 02 Aug 2022 18:48:11: start model_add_line... INFO @ Tue, 02 Aug 2022 18:48:11: start X-correlation... INFO @ Tue, 02 Aug 2022 18:48:11: end of X-cor INFO @ Tue, 02 Aug 2022 18:48:11: #2 finished! INFO @ Tue, 02 Aug 2022 18:48:11: #2 predicted fragment length is 63 bps INFO @ Tue, 02 Aug 2022 18:48:11: #2 alternative fragment length(s) may be 4,63 bps INFO @ Tue, 02 Aug 2022 18:48:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.10_model.r WARNING @ Tue, 02 Aug 2022 18:48:11: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:48:11: #2 You may need to consider one of the other alternative d(s): 4,63 WARNING @ Tue, 02 Aug 2022 18:48:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:48:11: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:48:11: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:48:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:48:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:48:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.20_summits.bed INFO @ Tue, 02 Aug 2022 18:48:17: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (828 records, 4 fields): 23 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:48:52: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:49:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:49:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:49:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178810/SRX12178810.10_summits.bed INFO @ Tue, 02 Aug 2022 18:49:16: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (8413 records, 4 fields): 27 millis CompletedMACS2peakCalling