Job ID = 16440105 SRX = SRX12178809 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:09:49 prefetch.2.10.7: 1) Downloading 'SRR15888105'... 2022-08-02T08:09:49 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:11:20 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:11:20 prefetch.2.10.7: 1) 'SRR15888105' was downloaded successfully 2022-08-02T08:11:20 prefetch.2.10.7: 'SRR15888105' has 0 unresolved dependencies Read 33842935 spots for SRR15888105/SRR15888105.sra Written 33842935 spots for SRR15888105/SRR15888105.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440765 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:33:14 33842935 reads; of these: 33842935 (100.00%) were paired; of these: 9903709 (29.26%) aligned concordantly 0 times 20623294 (60.94%) aligned concordantly exactly 1 time 3315932 (9.80%) aligned concordantly >1 times ---- 9903709 pairs aligned concordantly 0 times; of these: 3984072 (40.23%) aligned discordantly 1 time ---- 5919637 pairs aligned 0 times concordantly or discordantly; of these: 11839274 mates make up the pairs; of these: 7597349 (64.17%) aligned 0 times 3070903 (25.94%) aligned exactly 1 time 1171022 (9.89%) aligned >1 times 88.78% overall alignment rate Time searching: 00:33:15 Overall time: 00:33:15 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3933483 / 27796814 = 0.1415 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:00:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:00:54: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:00:54: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:01:00: 1000000 INFO @ Tue, 02 Aug 2022 18:01:05: 2000000 INFO @ Tue, 02 Aug 2022 18:01:11: 3000000 INFO @ Tue, 02 Aug 2022 18:01:16: 4000000 INFO @ Tue, 02 Aug 2022 18:01:21: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:01:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:01:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:01:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:01:27: 6000000 INFO @ Tue, 02 Aug 2022 18:01:30: 1000000 INFO @ Tue, 02 Aug 2022 18:01:33: 7000000 INFO @ Tue, 02 Aug 2022 18:01:35: 2000000 INFO @ Tue, 02 Aug 2022 18:01:39: 8000000 INFO @ Tue, 02 Aug 2022 18:01:41: 3000000 INFO @ Tue, 02 Aug 2022 18:01:45: 9000000 INFO @ Tue, 02 Aug 2022 18:01:47: 4000000 INFO @ Tue, 02 Aug 2022 18:01:50: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:01:52: 5000000 INFO @ Tue, 02 Aug 2022 18:01:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:01:54: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:01:54: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:01:56: 11000000 INFO @ Tue, 02 Aug 2022 18:01:58: 6000000 INFO @ Tue, 02 Aug 2022 18:02:00: 1000000 INFO @ Tue, 02 Aug 2022 18:02:01: 12000000 INFO @ Tue, 02 Aug 2022 18:02:04: 7000000 INFO @ Tue, 02 Aug 2022 18:02:07: 13000000 INFO @ Tue, 02 Aug 2022 18:02:07: 2000000 INFO @ Tue, 02 Aug 2022 18:02:10: 8000000 INFO @ Tue, 02 Aug 2022 18:02:13: 14000000 INFO @ Tue, 02 Aug 2022 18:02:13: 3000000 INFO @ Tue, 02 Aug 2022 18:02:16: 9000000 INFO @ Tue, 02 Aug 2022 18:02:18: 15000000 INFO @ Tue, 02 Aug 2022 18:02:19: 4000000 INFO @ Tue, 02 Aug 2022 18:02:22: 10000000 INFO @ Tue, 02 Aug 2022 18:02:24: 16000000 INFO @ Tue, 02 Aug 2022 18:02:25: 5000000 INFO @ Tue, 02 Aug 2022 18:02:28: 11000000 INFO @ Tue, 02 Aug 2022 18:02:29: 17000000 INFO @ Tue, 02 Aug 2022 18:02:31: 6000000 INFO @ Tue, 02 Aug 2022 18:02:34: 12000000 INFO @ Tue, 02 Aug 2022 18:02:35: 18000000 INFO @ Tue, 02 Aug 2022 18:02:37: 7000000 INFO @ Tue, 02 Aug 2022 18:02:40: 19000000 INFO @ Tue, 02 Aug 2022 18:02:40: 13000000 INFO @ Tue, 02 Aug 2022 18:02:42: 8000000 INFO @ Tue, 02 Aug 2022 18:02:46: 20000000 INFO @ Tue, 02 Aug 2022 18:02:46: 14000000 INFO @ Tue, 02 Aug 2022 18:02:48: 9000000 INFO @ Tue, 02 Aug 2022 18:02:51: 21000000 INFO @ Tue, 02 Aug 2022 18:02:52: 15000000 INFO @ Tue, 02 Aug 2022 18:02:54: 10000000 INFO @ Tue, 02 Aug 2022 18:02:57: 22000000 INFO @ Tue, 02 Aug 2022 18:02:58: 16000000 INFO @ Tue, 02 Aug 2022 18:02:59: 11000000 INFO @ Tue, 02 Aug 2022 18:03:03: 23000000 INFO @ Tue, 02 Aug 2022 18:03:05: 17000000 INFO @ Tue, 02 Aug 2022 18:03:05: 12000000 INFO @ Tue, 02 Aug 2022 18:03:08: 24000000 INFO @ Tue, 02 Aug 2022 18:03:11: 13000000 INFO @ Tue, 02 Aug 2022 18:03:11: 18000000 INFO @ Tue, 02 Aug 2022 18:03:14: 25000000 INFO @ Tue, 02 Aug 2022 18:03:17: 14000000 INFO @ Tue, 02 Aug 2022 18:03:17: 19000000 INFO @ Tue, 02 Aug 2022 18:03:20: 26000000 INFO @ Tue, 02 Aug 2022 18:03:22: 15000000 INFO @ Tue, 02 Aug 2022 18:03:23: 20000000 INFO @ Tue, 02 Aug 2022 18:03:25: 27000000 INFO @ Tue, 02 Aug 2022 18:03:28: 16000000 INFO @ Tue, 02 Aug 2022 18:03:29: 21000000 INFO @ Tue, 02 Aug 2022 18:03:31: 28000000 INFO @ Tue, 02 Aug 2022 18:03:34: 17000000 INFO @ Tue, 02 Aug 2022 18:03:36: 22000000 INFO @ Tue, 02 Aug 2022 18:03:37: 29000000 INFO @ Tue, 02 Aug 2022 18:03:40: 18000000 INFO @ Tue, 02 Aug 2022 18:03:42: 23000000 INFO @ Tue, 02 Aug 2022 18:03:42: 30000000 INFO @ Tue, 02 Aug 2022 18:03:45: 19000000 INFO @ Tue, 02 Aug 2022 18:03:48: 31000000 INFO @ Tue, 02 Aug 2022 18:03:49: 24000000 INFO @ Tue, 02 Aug 2022 18:03:51: 20000000 INFO @ Tue, 02 Aug 2022 18:03:54: 32000000 INFO @ Tue, 02 Aug 2022 18:03:56: 25000000 INFO @ Tue, 02 Aug 2022 18:03:57: 21000000 INFO @ Tue, 02 Aug 2022 18:04:00: 33000000 INFO @ Tue, 02 Aug 2022 18:04:02: 26000000 INFO @ Tue, 02 Aug 2022 18:04:03: 22000000 INFO @ Tue, 02 Aug 2022 18:04:06: 34000000 INFO @ Tue, 02 Aug 2022 18:04:08: 27000000 INFO @ Tue, 02 Aug 2022 18:04:09: 23000000 INFO @ Tue, 02 Aug 2022 18:04:12: 35000000 INFO @ Tue, 02 Aug 2022 18:04:15: 28000000 INFO @ Tue, 02 Aug 2022 18:04:15: 24000000 INFO @ Tue, 02 Aug 2022 18:04:18: 36000000 INFO @ Tue, 02 Aug 2022 18:04:21: 29000000 INFO @ Tue, 02 Aug 2022 18:04:21: 25000000 INFO @ Tue, 02 Aug 2022 18:04:24: 37000000 INFO @ Tue, 02 Aug 2022 18:04:27: 26000000 INFO @ Tue, 02 Aug 2022 18:04:27: 30000000 INFO @ Tue, 02 Aug 2022 18:04:30: 38000000 INFO @ Tue, 02 Aug 2022 18:04:33: 27000000 INFO @ Tue, 02 Aug 2022 18:04:34: 31000000 INFO @ Tue, 02 Aug 2022 18:04:35: 39000000 INFO @ Tue, 02 Aug 2022 18:04:39: 28000000 INFO @ Tue, 02 Aug 2022 18:04:40: 32000000 INFO @ Tue, 02 Aug 2022 18:04:42: 40000000 INFO @ Tue, 02 Aug 2022 18:04:45: 29000000 INFO @ Tue, 02 Aug 2022 18:04:47: 33000000 INFO @ Tue, 02 Aug 2022 18:04:48: 41000000 INFO @ Tue, 02 Aug 2022 18:04:51: 30000000 INFO @ Tue, 02 Aug 2022 18:04:53: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:04:54: 42000000 INFO @ Tue, 02 Aug 2022 18:04:57: 31000000 INFO @ Tue, 02 Aug 2022 18:04:59: 35000000 INFO @ Tue, 02 Aug 2022 18:05:01: 43000000 INFO @ Tue, 02 Aug 2022 18:05:03: 32000000 INFO @ Tue, 02 Aug 2022 18:05:06: 36000000 INFO @ Tue, 02 Aug 2022 18:05:07: 44000000 INFO @ Tue, 02 Aug 2022 18:05:08: 33000000 INFO @ Tue, 02 Aug 2022 18:05:12: 37000000 INFO @ Tue, 02 Aug 2022 18:05:12: 45000000 INFO @ Tue, 02 Aug 2022 18:05:14: 34000000 INFO @ Tue, 02 Aug 2022 18:05:18: 38000000 INFO @ Tue, 02 Aug 2022 18:05:18: 46000000 INFO @ Tue, 02 Aug 2022 18:05:20: 35000000 INFO @ Tue, 02 Aug 2022 18:05:24: 39000000 INFO @ Tue, 02 Aug 2022 18:05:24: 47000000 INFO @ Tue, 02 Aug 2022 18:05:26: 36000000 INFO @ Tue, 02 Aug 2022 18:05:30: 40000000 INFO @ Tue, 02 Aug 2022 18:05:30: 48000000 INFO @ Tue, 02 Aug 2022 18:05:32: 37000000 INFO @ Tue, 02 Aug 2022 18:05:36: 41000000 INFO @ Tue, 02 Aug 2022 18:05:36: 49000000 INFO @ Tue, 02 Aug 2022 18:05:38: 38000000 INFO @ Tue, 02 Aug 2022 18:05:42: 42000000 INFO @ Tue, 02 Aug 2022 18:05:42: 50000000 INFO @ Tue, 02 Aug 2022 18:05:44: 39000000 INFO @ Tue, 02 Aug 2022 18:05:48: 43000000 INFO @ Tue, 02 Aug 2022 18:05:48: 51000000 INFO @ Tue, 02 Aug 2022 18:05:50: 40000000 INFO @ Tue, 02 Aug 2022 18:05:54: 44000000 INFO @ Tue, 02 Aug 2022 18:05:54: 52000000 INFO @ Tue, 02 Aug 2022 18:05:56: 41000000 INFO @ Tue, 02 Aug 2022 18:05:56: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:05:56: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:05:56: #1 total tags in treatment: 20372336 INFO @ Tue, 02 Aug 2022 18:05:56: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:05:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:05:56: #1 tags after filtering in treatment: 13937518 INFO @ Tue, 02 Aug 2022 18:05:56: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 18:05:56: #1 finished! INFO @ Tue, 02 Aug 2022 18:05:56: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:05:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:05:57: #2 number of paired peaks: 1300 INFO @ Tue, 02 Aug 2022 18:05:57: start model_add_line... INFO @ Tue, 02 Aug 2022 18:05:57: start X-correlation... INFO @ Tue, 02 Aug 2022 18:05:58: end of X-cor INFO @ Tue, 02 Aug 2022 18:05:58: #2 finished! INFO @ Tue, 02 Aug 2022 18:05:58: #2 predicted fragment length is 66 bps INFO @ Tue, 02 Aug 2022 18:05:58: #2 alternative fragment length(s) may be 66 bps INFO @ Tue, 02 Aug 2022 18:05:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.05_model.r WARNING @ Tue, 02 Aug 2022 18:05:58: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:05:58: #2 You may need to consider one of the other alternative d(s): 66 WARNING @ Tue, 02 Aug 2022 18:05:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:05:58: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:05:58: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:06:00: 45000000 INFO @ Tue, 02 Aug 2022 18:06:02: 42000000 INFO @ Tue, 02 Aug 2022 18:06:06: 46000000 INFO @ Tue, 02 Aug 2022 18:06:08: 43000000 INFO @ Tue, 02 Aug 2022 18:06:12: 47000000 INFO @ Tue, 02 Aug 2022 18:06:14: 44000000 INFO @ Tue, 02 Aug 2022 18:06:18: 48000000 INFO @ Tue, 02 Aug 2022 18:06:20: 45000000 INFO @ Tue, 02 Aug 2022 18:06:24: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:06:24: 49000000 INFO @ Tue, 02 Aug 2022 18:06:26: 46000000 INFO @ Tue, 02 Aug 2022 18:06:30: 50000000 INFO @ Tue, 02 Aug 2022 18:06:32: 47000000 INFO @ Tue, 02 Aug 2022 18:06:36: 51000000 INFO @ Tue, 02 Aug 2022 18:06:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:06:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:06:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.05_summits.bed INFO @ Tue, 02 Aug 2022 18:06:38: Done! INFO @ Tue, 02 Aug 2022 18:06:38: 48000000 pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (18481 records, 4 fields): 42 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:06:42: 52000000 INFO @ Tue, 02 Aug 2022 18:06:43: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:06:43: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:06:43: #1 total tags in treatment: 20372336 INFO @ Tue, 02 Aug 2022 18:06:43: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:06:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:06:44: 49000000 INFO @ Tue, 02 Aug 2022 18:06:44: #1 tags after filtering in treatment: 13937518 INFO @ Tue, 02 Aug 2022 18:06:44: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 18:06:44: #1 finished! INFO @ Tue, 02 Aug 2022 18:06:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:06:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:06:45: #2 number of paired peaks: 1300 INFO @ Tue, 02 Aug 2022 18:06:45: start model_add_line... INFO @ Tue, 02 Aug 2022 18:06:45: start X-correlation... INFO @ Tue, 02 Aug 2022 18:06:45: end of X-cor INFO @ Tue, 02 Aug 2022 18:06:45: #2 finished! INFO @ Tue, 02 Aug 2022 18:06:45: #2 predicted fragment length is 66 bps INFO @ Tue, 02 Aug 2022 18:06:45: #2 alternative fragment length(s) may be 66 bps INFO @ Tue, 02 Aug 2022 18:06:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.10_model.r WARNING @ Tue, 02 Aug 2022 18:06:45: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:06:45: #2 You may need to consider one of the other alternative d(s): 66 WARNING @ Tue, 02 Aug 2022 18:06:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:06:45: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:06:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:06:49: 50000000 INFO @ Tue, 02 Aug 2022 18:06:55: 51000000 INFO @ Tue, 02 Aug 2022 18:07:00: 52000000 INFO @ Tue, 02 Aug 2022 18:07:02: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:07:02: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:07:02: #1 total tags in treatment: 20372336 INFO @ Tue, 02 Aug 2022 18:07:02: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:07:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:07:02: #1 tags after filtering in treatment: 13937518 INFO @ Tue, 02 Aug 2022 18:07:02: #1 Redundant rate of treatment: 0.32 INFO @ Tue, 02 Aug 2022 18:07:02: #1 finished! INFO @ Tue, 02 Aug 2022 18:07:02: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:07:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:07:03: #2 number of paired peaks: 1300 INFO @ Tue, 02 Aug 2022 18:07:03: start model_add_line... INFO @ Tue, 02 Aug 2022 18:07:03: start X-correlation... INFO @ Tue, 02 Aug 2022 18:07:03: end of X-cor INFO @ Tue, 02 Aug 2022 18:07:03: #2 finished! INFO @ Tue, 02 Aug 2022 18:07:03: #2 predicted fragment length is 66 bps INFO @ Tue, 02 Aug 2022 18:07:03: #2 alternative fragment length(s) may be 66 bps INFO @ Tue, 02 Aug 2022 18:07:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.20_model.r WARNING @ Tue, 02 Aug 2022 18:07:03: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:07:03: #2 You may need to consider one of the other alternative d(s): 66 WARNING @ Tue, 02 Aug 2022 18:07:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:07:03: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:07:03: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:07:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:07:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:07:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:07:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.10_summits.bed INFO @ Tue, 02 Aug 2022 18:07:27: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (10068 records, 4 fields): 50 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:07:30: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:07:44: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:07:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:07:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178809/SRX12178809.20_summits.bed INFO @ Tue, 02 Aug 2022 18:07:44: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2444 records, 4 fields): 29 millis CompletedMACS2peakCalling