Job ID = 16440098 SRX = SRX12178805 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:07:37 prefetch.2.10.7: 1) Downloading 'SRR15888109'... 2022-08-02T08:07:37 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:10:17 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:10:17 prefetch.2.10.7: 1) 'SRR15888109' was downloaded successfully 2022-08-02T08:10:17 prefetch.2.10.7: 'SRR15888109' has 0 unresolved dependencies Read 50704869 spots for SRR15888109/SRR15888109.sra Written 50704869 spots for SRR15888109/SRR15888109.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440987 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:00:49 50704869 reads; of these: 50704869 (100.00%) were paired; of these: 18748112 (36.97%) aligned concordantly 0 times 28317140 (55.85%) aligned concordantly exactly 1 time 3639617 (7.18%) aligned concordantly >1 times ---- 18748112 pairs aligned concordantly 0 times; of these: 5263920 (28.08%) aligned discordantly 1 time ---- 13484192 pairs aligned 0 times concordantly or discordantly; of these: 26968384 mates make up the pairs; of these: 20997008 (77.86%) aligned 0 times 4552763 (16.88%) aligned exactly 1 time 1418613 (5.26%) aligned >1 times 79.29% overall alignment rate Time searching: 01:00:49 Overall time: 01:00:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9602467 / 37098103 = 0.2588 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:44:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:44:35: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:44:35: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:44:43: 1000000 INFO @ Tue, 02 Aug 2022 18:44:50: 2000000 INFO @ Tue, 02 Aug 2022 18:44:58: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:45:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:45:04: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:45:04: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:45:06: 4000000 INFO @ Tue, 02 Aug 2022 18:45:11: 1000000 INFO @ Tue, 02 Aug 2022 18:45:14: 5000000 INFO @ Tue, 02 Aug 2022 18:45:18: 2000000 INFO @ Tue, 02 Aug 2022 18:45:22: 6000000 INFO @ Tue, 02 Aug 2022 18:45:25: 3000000 INFO @ Tue, 02 Aug 2022 18:45:31: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:45:33: 4000000 INFO @ Tue, 02 Aug 2022 18:45:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:45:34: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:45:34: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:45:39: 8000000 INFO @ Tue, 02 Aug 2022 18:45:41: 5000000 INFO @ Tue, 02 Aug 2022 18:45:42: 1000000 INFO @ Tue, 02 Aug 2022 18:45:49: 9000000 INFO @ Tue, 02 Aug 2022 18:45:49: 6000000 INFO @ Tue, 02 Aug 2022 18:45:51: 2000000 INFO @ Tue, 02 Aug 2022 18:45:57: 7000000 INFO @ Tue, 02 Aug 2022 18:45:58: 10000000 INFO @ Tue, 02 Aug 2022 18:45:59: 3000000 INFO @ Tue, 02 Aug 2022 18:46:04: 8000000 INFO @ Tue, 02 Aug 2022 18:46:06: 11000000 INFO @ Tue, 02 Aug 2022 18:46:09: 4000000 INFO @ Tue, 02 Aug 2022 18:46:13: 9000000 INFO @ Tue, 02 Aug 2022 18:46:15: 12000000 INFO @ Tue, 02 Aug 2022 18:46:18: 5000000 INFO @ Tue, 02 Aug 2022 18:46:21: 10000000 INFO @ Tue, 02 Aug 2022 18:46:24: 13000000 INFO @ Tue, 02 Aug 2022 18:46:27: 6000000 INFO @ Tue, 02 Aug 2022 18:46:29: 11000000 INFO @ Tue, 02 Aug 2022 18:46:32: 14000000 INFO @ Tue, 02 Aug 2022 18:46:36: 7000000 INFO @ Tue, 02 Aug 2022 18:46:38: 12000000 INFO @ Tue, 02 Aug 2022 18:46:41: 15000000 INFO @ Tue, 02 Aug 2022 18:46:45: 8000000 INFO @ Tue, 02 Aug 2022 18:46:46: 13000000 INFO @ Tue, 02 Aug 2022 18:46:50: 16000000 INFO @ Tue, 02 Aug 2022 18:46:55: 9000000 INFO @ Tue, 02 Aug 2022 18:46:55: 14000000 INFO @ Tue, 02 Aug 2022 18:46:58: 17000000 INFO @ Tue, 02 Aug 2022 18:47:03: 15000000 INFO @ Tue, 02 Aug 2022 18:47:04: 10000000 INFO @ Tue, 02 Aug 2022 18:47:06: 18000000 INFO @ Tue, 02 Aug 2022 18:47:12: 16000000 INFO @ Tue, 02 Aug 2022 18:47:13: 11000000 INFO @ Tue, 02 Aug 2022 18:47:15: 19000000 INFO @ Tue, 02 Aug 2022 18:47:21: 17000000 INFO @ Tue, 02 Aug 2022 18:47:23: 12000000 INFO @ Tue, 02 Aug 2022 18:47:23: 20000000 INFO @ Tue, 02 Aug 2022 18:47:29: 18000000 INFO @ Tue, 02 Aug 2022 18:47:31: 21000000 INFO @ Tue, 02 Aug 2022 18:47:32: 13000000 INFO @ Tue, 02 Aug 2022 18:47:37: 19000000 INFO @ Tue, 02 Aug 2022 18:47:40: 22000000 INFO @ Tue, 02 Aug 2022 18:47:42: 14000000 INFO @ Tue, 02 Aug 2022 18:47:45: 20000000 INFO @ Tue, 02 Aug 2022 18:47:48: 23000000 INFO @ Tue, 02 Aug 2022 18:47:51: 15000000 INFO @ Tue, 02 Aug 2022 18:47:53: 21000000 INFO @ Tue, 02 Aug 2022 18:47:56: 24000000 INFO @ Tue, 02 Aug 2022 18:48:00: 16000000 INFO @ Tue, 02 Aug 2022 18:48:02: 22000000 INFO @ Tue, 02 Aug 2022 18:48:04: 25000000 INFO @ Tue, 02 Aug 2022 18:48:09: 17000000 INFO @ Tue, 02 Aug 2022 18:48:10: 23000000 INFO @ Tue, 02 Aug 2022 18:48:13: 26000000 INFO @ Tue, 02 Aug 2022 18:48:18: 18000000 INFO @ Tue, 02 Aug 2022 18:48:18: 24000000 INFO @ Tue, 02 Aug 2022 18:48:21: 27000000 INFO @ Tue, 02 Aug 2022 18:48:26: 19000000 INFO @ Tue, 02 Aug 2022 18:48:26: 25000000 INFO @ Tue, 02 Aug 2022 18:48:29: 28000000 INFO @ Tue, 02 Aug 2022 18:48:35: 26000000 INFO @ Tue, 02 Aug 2022 18:48:35: 20000000 INFO @ Tue, 02 Aug 2022 18:48:38: 29000000 INFO @ Tue, 02 Aug 2022 18:48:43: 27000000 INFO @ Tue, 02 Aug 2022 18:48:44: 21000000 INFO @ Tue, 02 Aug 2022 18:48:46: 30000000 INFO @ Tue, 02 Aug 2022 18:48:51: 28000000 INFO @ Tue, 02 Aug 2022 18:48:53: 22000000 INFO @ Tue, 02 Aug 2022 18:48:55: 31000000 INFO @ Tue, 02 Aug 2022 18:48:59: 29000000 INFO @ Tue, 02 Aug 2022 18:49:01: 23000000 INFO @ Tue, 02 Aug 2022 18:49:04: 32000000 INFO @ Tue, 02 Aug 2022 18:49:07: 30000000 INFO @ Tue, 02 Aug 2022 18:49:10: 24000000 INFO @ Tue, 02 Aug 2022 18:49:13: 33000000 INFO @ Tue, 02 Aug 2022 18:49:15: 31000000 INFO @ Tue, 02 Aug 2022 18:49:19: 25000000 INFO @ Tue, 02 Aug 2022 18:49:21: 34000000 INFO @ Tue, 02 Aug 2022 18:49:23: 32000000 INFO @ Tue, 02 Aug 2022 18:49:28: 26000000 INFO @ Tue, 02 Aug 2022 18:49:31: 35000000 INFO @ Tue, 02 Aug 2022 18:49:32: 33000000 INFO @ Tue, 02 Aug 2022 18:49:37: 27000000 INFO @ Tue, 02 Aug 2022 18:49:40: 36000000 INFO @ Tue, 02 Aug 2022 18:49:41: 34000000 INFO @ Tue, 02 Aug 2022 18:49:46: 28000000 INFO @ Tue, 02 Aug 2022 18:49:49: 35000000 INFO @ Tue, 02 Aug 2022 18:49:50: 37000000 INFO @ Tue, 02 Aug 2022 18:49:55: 29000000 INFO @ Tue, 02 Aug 2022 18:49:59: 36000000 INFO @ Tue, 02 Aug 2022 18:50:00: 38000000 INFO @ Tue, 02 Aug 2022 18:50:04: 30000000 INFO @ Tue, 02 Aug 2022 18:50:08: 37000000 INFO @ Tue, 02 Aug 2022 18:50:09: 39000000 INFO @ Tue, 02 Aug 2022 18:50:13: 31000000 INFO @ Tue, 02 Aug 2022 18:50:18: 38000000 INFO @ Tue, 02 Aug 2022 18:50:20: 40000000 INFO @ Tue, 02 Aug 2022 18:50:22: 32000000 INFO @ Tue, 02 Aug 2022 18:50:28: 39000000 INFO @ Tue, 02 Aug 2022 18:50:30: 41000000 INFO @ Tue, 02 Aug 2022 18:50:31: 33000000 INFO @ Tue, 02 Aug 2022 18:50:38: 40000000 INFO @ Tue, 02 Aug 2022 18:50:39: 42000000 INFO @ Tue, 02 Aug 2022 18:50:40: 34000000 INFO @ Tue, 02 Aug 2022 18:50:48: 41000000 INFO @ Tue, 02 Aug 2022 18:50:49: 43000000 INFO @ Tue, 02 Aug 2022 18:50:49: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:50:57: 42000000 INFO @ Tue, 02 Aug 2022 18:50:58: 44000000 INFO @ Tue, 02 Aug 2022 18:50:59: 36000000 INFO @ Tue, 02 Aug 2022 18:51:06: 43000000 INFO @ Tue, 02 Aug 2022 18:51:08: 45000000 INFO @ Tue, 02 Aug 2022 18:51:08: 37000000 INFO @ Tue, 02 Aug 2022 18:51:15: 44000000 INFO @ Tue, 02 Aug 2022 18:51:18: 46000000 INFO @ Tue, 02 Aug 2022 18:51:18: 38000000 INFO @ Tue, 02 Aug 2022 18:51:25: 45000000 INFO @ Tue, 02 Aug 2022 18:51:27: 47000000 INFO @ Tue, 02 Aug 2022 18:51:28: 39000000 INFO @ Tue, 02 Aug 2022 18:51:34: 46000000 INFO @ Tue, 02 Aug 2022 18:51:37: 48000000 INFO @ Tue, 02 Aug 2022 18:51:38: 40000000 INFO @ Tue, 02 Aug 2022 18:51:44: 47000000 INFO @ Tue, 02 Aug 2022 18:51:46: 49000000 INFO @ Tue, 02 Aug 2022 18:51:48: 41000000 INFO @ Tue, 02 Aug 2022 18:51:54: 48000000 INFO @ Tue, 02 Aug 2022 18:51:56: 50000000 INFO @ Tue, 02 Aug 2022 18:51:59: 42000000 INFO @ Tue, 02 Aug 2022 18:52:04: 49000000 INFO @ Tue, 02 Aug 2022 18:52:06: 51000000 INFO @ Tue, 02 Aug 2022 18:52:09: 43000000 INFO @ Tue, 02 Aug 2022 18:52:14: 50000000 INFO @ Tue, 02 Aug 2022 18:52:16: 52000000 INFO @ Tue, 02 Aug 2022 18:52:19: 44000000 INFO @ Tue, 02 Aug 2022 18:52:24: 51000000 INFO @ Tue, 02 Aug 2022 18:52:26: 53000000 INFO @ Tue, 02 Aug 2022 18:52:29: 45000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:52:34: 52000000 INFO @ Tue, 02 Aug 2022 18:52:35: 54000000 INFO @ Tue, 02 Aug 2022 18:52:39: 46000000 INFO @ Tue, 02 Aug 2022 18:52:44: 55000000 INFO @ Tue, 02 Aug 2022 18:52:44: 53000000 INFO @ Tue, 02 Aug 2022 18:52:49: 47000000 INFO @ Tue, 02 Aug 2022 18:52:52: 56000000 INFO @ Tue, 02 Aug 2022 18:52:54: 54000000 INFO @ Tue, 02 Aug 2022 18:52:59: 48000000 INFO @ Tue, 02 Aug 2022 18:53:01: 57000000 INFO @ Tue, 02 Aug 2022 18:53:03: 55000000 INFO @ Tue, 02 Aug 2022 18:53:08: 49000000 INFO @ Tue, 02 Aug 2022 18:53:09: 58000000 INFO @ Tue, 02 Aug 2022 18:53:12: 56000000 INFO @ Tue, 02 Aug 2022 18:53:17: 50000000 INFO @ Tue, 02 Aug 2022 18:53:17: 59000000 INFO @ Tue, 02 Aug 2022 18:53:21: 57000000 INFO @ Tue, 02 Aug 2022 18:53:26: 60000000 INFO @ Tue, 02 Aug 2022 18:53:27: 51000000 INFO @ Tue, 02 Aug 2022 18:53:30: 58000000 INFO @ Tue, 02 Aug 2022 18:53:35: 61000000 INFO @ Tue, 02 Aug 2022 18:53:37: 52000000 INFO @ Tue, 02 Aug 2022 18:53:37: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:53:37: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:53:37: #1 total tags in treatment: 23334795 INFO @ Tue, 02 Aug 2022 18:53:37: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:53:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:53:38: #1 tags after filtering in treatment: 14808788 INFO @ Tue, 02 Aug 2022 18:53:38: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 18:53:38: #1 finished! INFO @ Tue, 02 Aug 2022 18:53:38: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:53:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:53:39: 59000000 INFO @ Tue, 02 Aug 2022 18:53:39: #2 number of paired peaks: 1421 INFO @ Tue, 02 Aug 2022 18:53:39: start model_add_line... INFO @ Tue, 02 Aug 2022 18:53:39: start X-correlation... INFO @ Tue, 02 Aug 2022 18:53:40: end of X-cor INFO @ Tue, 02 Aug 2022 18:53:40: #2 finished! INFO @ Tue, 02 Aug 2022 18:53:40: #2 predicted fragment length is 56 bps INFO @ Tue, 02 Aug 2022 18:53:40: #2 alternative fragment length(s) may be 4,56 bps INFO @ Tue, 02 Aug 2022 18:53:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.05_model.r WARNING @ Tue, 02 Aug 2022 18:53:40: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:53:40: #2 You may need to consider one of the other alternative d(s): 4,56 WARNING @ Tue, 02 Aug 2022 18:53:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:53:40: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:53:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:53:47: 53000000 INFO @ Tue, 02 Aug 2022 18:53:48: 60000000 INFO @ Tue, 02 Aug 2022 18:53:56: 54000000 INFO @ Tue, 02 Aug 2022 18:53:57: 61000000 INFO @ Tue, 02 Aug 2022 18:53:59: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:53:59: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:53:59: #1 total tags in treatment: 23334795 INFO @ Tue, 02 Aug 2022 18:53:59: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:53:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:54:00: #1 tags after filtering in treatment: 14808788 INFO @ Tue, 02 Aug 2022 18:54:00: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 18:54:00: #1 finished! INFO @ Tue, 02 Aug 2022 18:54:00: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:54:00: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:54:01: #2 number of paired peaks: 1421 INFO @ Tue, 02 Aug 2022 18:54:01: start model_add_line... INFO @ Tue, 02 Aug 2022 18:54:01: start X-correlation... INFO @ Tue, 02 Aug 2022 18:54:01: end of X-cor INFO @ Tue, 02 Aug 2022 18:54:01: #2 finished! INFO @ Tue, 02 Aug 2022 18:54:01: #2 predicted fragment length is 56 bps INFO @ Tue, 02 Aug 2022 18:54:01: #2 alternative fragment length(s) may be 4,56 bps INFO @ Tue, 02 Aug 2022 18:54:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.10_model.r WARNING @ Tue, 02 Aug 2022 18:54:01: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:54:01: #2 You may need to consider one of the other alternative d(s): 4,56 WARNING @ Tue, 02 Aug 2022 18:54:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:54:01: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:54:01: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:54:05: 55000000 INFO @ Tue, 02 Aug 2022 18:54:14: 56000000 INFO @ Tue, 02 Aug 2022 18:54:20: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:54:23: 57000000 INFO @ Tue, 02 Aug 2022 18:54:32: 58000000 INFO @ Tue, 02 Aug 2022 18:54:41: 59000000 INFO @ Tue, 02 Aug 2022 18:54:43: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:54:43: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:54:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:54:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.05_summits.bed INFO @ Tue, 02 Aug 2022 18:54:44: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (20426 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:54:50: 60000000 INFO @ Tue, 02 Aug 2022 18:54:59: 61000000 INFO @ Tue, 02 Aug 2022 18:55:01: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:55:01: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:55:01: #1 total tags in treatment: 23334795 INFO @ Tue, 02 Aug 2022 18:55:01: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:55:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:55:02: #1 tags after filtering in treatment: 14808788 INFO @ Tue, 02 Aug 2022 18:55:02: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 18:55:02: #1 finished! INFO @ Tue, 02 Aug 2022 18:55:02: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:55:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:55:03: #2 number of paired peaks: 1421 INFO @ Tue, 02 Aug 2022 18:55:03: start model_add_line... INFO @ Tue, 02 Aug 2022 18:55:03: start X-correlation... INFO @ Tue, 02 Aug 2022 18:55:03: end of X-cor INFO @ Tue, 02 Aug 2022 18:55:03: #2 finished! INFO @ Tue, 02 Aug 2022 18:55:03: #2 predicted fragment length is 56 bps INFO @ Tue, 02 Aug 2022 18:55:03: #2 alternative fragment length(s) may be 4,56 bps INFO @ Tue, 02 Aug 2022 18:55:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.20_model.r WARNING @ Tue, 02 Aug 2022 18:55:03: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:55:03: #2 You may need to consider one of the other alternative d(s): 4,56 WARNING @ Tue, 02 Aug 2022 18:55:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:55:03: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:55:03: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:55:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:55:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:55:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.10_summits.bed INFO @ Tue, 02 Aug 2022 18:55:08: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (9385 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:55:46: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:56:09: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:56:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:56:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178805/SRX12178805.20_summits.bed INFO @ Tue, 02 Aug 2022 18:56:09: Done! pass1 - making usageList (10 chroms): 1 millis pass2 - checking and writing primary data (802 records, 4 fields): 5 millis CompletedMACS2peakCalling