Job ID = 16439691 SRX = SRX11499362 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 18251370 spots for SRR15192714/SRR15192714.sra Written 18251370 spots for SRR15192714/SRR15192714.sra Read 17108712 spots for SRR15192715/SRR15192715.sra Written 17108712 spots for SRR15192715/SRR15192715.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440707 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:41:48 35360082 reads; of these: 35360082 (100.00%) were paired; of these: 5042260 (14.26%) aligned concordantly 0 times 23839949 (67.42%) aligned concordantly exactly 1 time 6477873 (18.32%) aligned concordantly >1 times ---- 5042260 pairs aligned concordantly 0 times; of these: 2358497 (46.77%) aligned discordantly 1 time ---- 2683763 pairs aligned 0 times concordantly or discordantly; of these: 5367526 mates make up the pairs; of these: 2847430 (53.05%) aligned 0 times 1204163 (22.43%) aligned exactly 1 time 1315933 (24.52%) aligned >1 times 95.97% overall alignment rate Time searching: 01:41:49 Overall time: 01:41:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4164679 / 29344609 = 0.1419 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:11:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:11:36: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:11:36: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:11:45: 1000000 INFO @ Tue, 02 Aug 2022 18:11:53: 2000000 INFO @ Tue, 02 Aug 2022 18:12:01: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:12:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:12:06: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:12:06: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:12:09: 4000000 INFO @ Tue, 02 Aug 2022 18:12:15: 1000000 INFO @ Tue, 02 Aug 2022 18:12:17: 5000000 INFO @ Tue, 02 Aug 2022 18:12:23: 2000000 INFO @ Tue, 02 Aug 2022 18:12:26: 6000000 INFO @ Tue, 02 Aug 2022 18:12:31: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:12:36: 7000000 INFO @ Tue, 02 Aug 2022 18:12:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:12:36: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:12:36: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:12:39: 4000000 INFO @ Tue, 02 Aug 2022 18:12:45: 8000000 INFO @ Tue, 02 Aug 2022 18:12:45: 1000000 INFO @ Tue, 02 Aug 2022 18:12:48: 5000000 INFO @ Tue, 02 Aug 2022 18:12:54: 9000000 INFO @ Tue, 02 Aug 2022 18:12:54: 2000000 INFO @ Tue, 02 Aug 2022 18:12:56: 6000000 INFO @ Tue, 02 Aug 2022 18:13:03: 3000000 INFO @ Tue, 02 Aug 2022 18:13:03: 10000000 INFO @ Tue, 02 Aug 2022 18:13:05: 7000000 INFO @ Tue, 02 Aug 2022 18:13:11: 4000000 INFO @ Tue, 02 Aug 2022 18:13:12: 11000000 INFO @ Tue, 02 Aug 2022 18:13:13: 8000000 INFO @ Tue, 02 Aug 2022 18:13:20: 5000000 INFO @ Tue, 02 Aug 2022 18:13:21: 12000000 INFO @ Tue, 02 Aug 2022 18:13:21: 9000000 INFO @ Tue, 02 Aug 2022 18:13:28: 6000000 INFO @ Tue, 02 Aug 2022 18:13:30: 13000000 INFO @ Tue, 02 Aug 2022 18:13:30: 10000000 INFO @ Tue, 02 Aug 2022 18:13:36: 7000000 INFO @ Tue, 02 Aug 2022 18:13:38: 11000000 INFO @ Tue, 02 Aug 2022 18:13:38: 14000000 INFO @ Tue, 02 Aug 2022 18:13:45: 8000000 INFO @ Tue, 02 Aug 2022 18:13:46: 12000000 INFO @ Tue, 02 Aug 2022 18:13:47: 15000000 INFO @ Tue, 02 Aug 2022 18:13:53: 9000000 INFO @ Tue, 02 Aug 2022 18:13:54: 13000000 INFO @ Tue, 02 Aug 2022 18:13:56: 16000000 INFO @ Tue, 02 Aug 2022 18:14:02: 10000000 INFO @ Tue, 02 Aug 2022 18:14:02: 14000000 INFO @ Tue, 02 Aug 2022 18:14:04: 17000000 INFO @ Tue, 02 Aug 2022 18:14:10: 11000000 INFO @ Tue, 02 Aug 2022 18:14:11: 15000000 INFO @ Tue, 02 Aug 2022 18:14:13: 18000000 INFO @ Tue, 02 Aug 2022 18:14:18: 12000000 INFO @ Tue, 02 Aug 2022 18:14:19: 16000000 INFO @ Tue, 02 Aug 2022 18:14:21: 19000000 INFO @ Tue, 02 Aug 2022 18:14:27: 13000000 INFO @ Tue, 02 Aug 2022 18:14:27: 17000000 INFO @ Tue, 02 Aug 2022 18:14:30: 20000000 INFO @ Tue, 02 Aug 2022 18:14:35: 18000000 INFO @ Tue, 02 Aug 2022 18:14:35: 14000000 INFO @ Tue, 02 Aug 2022 18:14:38: 21000000 INFO @ Tue, 02 Aug 2022 18:14:43: 19000000 INFO @ Tue, 02 Aug 2022 18:14:44: 15000000 INFO @ Tue, 02 Aug 2022 18:14:47: 22000000 INFO @ Tue, 02 Aug 2022 18:14:51: 20000000 INFO @ Tue, 02 Aug 2022 18:14:52: 16000000 INFO @ Tue, 02 Aug 2022 18:14:55: 23000000 INFO @ Tue, 02 Aug 2022 18:14:59: 21000000 INFO @ Tue, 02 Aug 2022 18:15:00: 17000000 INFO @ Tue, 02 Aug 2022 18:15:03: 24000000 INFO @ Tue, 02 Aug 2022 18:15:08: 22000000 INFO @ Tue, 02 Aug 2022 18:15:09: 18000000 INFO @ Tue, 02 Aug 2022 18:15:12: 25000000 INFO @ Tue, 02 Aug 2022 18:15:16: 23000000 INFO @ Tue, 02 Aug 2022 18:15:17: 19000000 INFO @ Tue, 02 Aug 2022 18:15:20: 26000000 INFO @ Tue, 02 Aug 2022 18:15:24: 24000000 INFO @ Tue, 02 Aug 2022 18:15:25: 20000000 INFO @ Tue, 02 Aug 2022 18:15:29: 27000000 INFO @ Tue, 02 Aug 2022 18:15:32: 25000000 INFO @ Tue, 02 Aug 2022 18:15:34: 21000000 INFO @ Tue, 02 Aug 2022 18:15:38: 28000000 INFO @ Tue, 02 Aug 2022 18:15:41: 26000000 INFO @ Tue, 02 Aug 2022 18:15:43: 22000000 INFO @ Tue, 02 Aug 2022 18:15:46: 29000000 INFO @ Tue, 02 Aug 2022 18:15:49: 27000000 INFO @ Tue, 02 Aug 2022 18:15:51: 23000000 INFO @ Tue, 02 Aug 2022 18:15:55: 30000000 INFO @ Tue, 02 Aug 2022 18:15:57: 28000000 INFO @ Tue, 02 Aug 2022 18:16:00: 24000000 INFO @ Tue, 02 Aug 2022 18:16:03: 31000000 INFO @ Tue, 02 Aug 2022 18:16:05: 29000000 INFO @ Tue, 02 Aug 2022 18:16:08: 25000000 INFO @ Tue, 02 Aug 2022 18:16:11: 32000000 INFO @ Tue, 02 Aug 2022 18:16:13: 30000000 INFO @ Tue, 02 Aug 2022 18:16:17: 26000000 INFO @ Tue, 02 Aug 2022 18:16:20: 33000000 INFO @ Tue, 02 Aug 2022 18:16:21: 31000000 INFO @ Tue, 02 Aug 2022 18:16:25: 27000000 INFO @ Tue, 02 Aug 2022 18:16:28: 34000000 INFO @ Tue, 02 Aug 2022 18:16:29: 32000000 INFO @ Tue, 02 Aug 2022 18:16:34: 28000000 INFO @ Tue, 02 Aug 2022 18:16:37: 35000000 INFO @ Tue, 02 Aug 2022 18:16:38: 33000000 INFO @ Tue, 02 Aug 2022 18:16:42: 29000000 INFO @ Tue, 02 Aug 2022 18:16:45: 36000000 INFO @ Tue, 02 Aug 2022 18:16:46: 34000000 INFO @ Tue, 02 Aug 2022 18:16:51: 30000000 INFO @ Tue, 02 Aug 2022 18:16:54: 37000000 INFO @ Tue, 02 Aug 2022 18:16:54: 35000000 INFO @ Tue, 02 Aug 2022 18:16:59: 31000000 INFO @ Tue, 02 Aug 2022 18:17:02: 36000000 INFO @ Tue, 02 Aug 2022 18:17:02: 38000000 INFO @ Tue, 02 Aug 2022 18:17:07: 32000000 INFO @ Tue, 02 Aug 2022 18:17:11: 37000000 INFO @ Tue, 02 Aug 2022 18:17:11: 39000000 INFO @ Tue, 02 Aug 2022 18:17:15: 33000000 INFO @ Tue, 02 Aug 2022 18:17:19: 38000000 INFO @ Tue, 02 Aug 2022 18:17:19: 40000000 INFO @ Tue, 02 Aug 2022 18:17:24: 34000000 INFO @ Tue, 02 Aug 2022 18:17:27: 39000000 INFO @ Tue, 02 Aug 2022 18:17:28: 41000000 INFO @ Tue, 02 Aug 2022 18:17:33: 35000000 INFO @ Tue, 02 Aug 2022 18:17:35: 40000000 INFO @ Tue, 02 Aug 2022 18:17:36: 42000000 INFO @ Tue, 02 Aug 2022 18:17:41: 36000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:17:43: 41000000 INFO @ Tue, 02 Aug 2022 18:17:45: 43000000 INFO @ Tue, 02 Aug 2022 18:17:50: 37000000 INFO @ Tue, 02 Aug 2022 18:17:52: 42000000 INFO @ Tue, 02 Aug 2022 18:17:54: 44000000 INFO @ Tue, 02 Aug 2022 18:17:58: 38000000 INFO @ Tue, 02 Aug 2022 18:18:00: 43000000 INFO @ Tue, 02 Aug 2022 18:18:02: 45000000 INFO @ Tue, 02 Aug 2022 18:18:07: 39000000 INFO @ Tue, 02 Aug 2022 18:18:08: 44000000 INFO @ Tue, 02 Aug 2022 18:18:11: 46000000 INFO @ Tue, 02 Aug 2022 18:18:16: 40000000 INFO @ Tue, 02 Aug 2022 18:18:17: 45000000 INFO @ Tue, 02 Aug 2022 18:18:20: 47000000 INFO @ Tue, 02 Aug 2022 18:18:24: 41000000 INFO @ Tue, 02 Aug 2022 18:18:25: 46000000 INFO @ Tue, 02 Aug 2022 18:18:28: 48000000 INFO @ Tue, 02 Aug 2022 18:18:33: 42000000 INFO @ Tue, 02 Aug 2022 18:18:33: 47000000 INFO @ Tue, 02 Aug 2022 18:18:37: 49000000 INFO @ Tue, 02 Aug 2022 18:18:41: 43000000 INFO @ Tue, 02 Aug 2022 18:18:42: 48000000 INFO @ Tue, 02 Aug 2022 18:18:46: 50000000 INFO @ Tue, 02 Aug 2022 18:18:50: 44000000 INFO @ Tue, 02 Aug 2022 18:18:50: 49000000 INFO @ Tue, 02 Aug 2022 18:18:54: 51000000 INFO @ Tue, 02 Aug 2022 18:18:58: 50000000 INFO @ Tue, 02 Aug 2022 18:18:58: 45000000 INFO @ Tue, 02 Aug 2022 18:19:03: 52000000 INFO @ Tue, 02 Aug 2022 18:19:06: 51000000 INFO @ Tue, 02 Aug 2022 18:19:07: 46000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:19:11: 53000000 INFO @ Tue, 02 Aug 2022 18:19:15: 52000000 INFO @ Tue, 02 Aug 2022 18:19:15: 47000000 INFO @ Tue, 02 Aug 2022 18:19:20: 54000000 INFO @ Tue, 02 Aug 2022 18:19:23: 53000000 INFO @ Tue, 02 Aug 2022 18:19:24: 48000000 INFO @ Tue, 02 Aug 2022 18:19:28: 55000000 INFO @ Tue, 02 Aug 2022 18:19:31: 54000000 INFO @ Tue, 02 Aug 2022 18:19:32: 49000000 INFO @ Tue, 02 Aug 2022 18:19:37: 56000000 INFO @ Tue, 02 Aug 2022 18:19:40: 55000000 INFO @ Tue, 02 Aug 2022 18:19:41: 50000000 INFO @ Tue, 02 Aug 2022 18:19:46: 57000000 INFO @ Tue, 02 Aug 2022 18:19:48: 56000000 INFO @ Tue, 02 Aug 2022 18:19:50: 51000000 INFO @ Tue, 02 Aug 2022 18:19:54: 58000000 INFO @ Tue, 02 Aug 2022 18:19:56: 57000000 INFO @ Tue, 02 Aug 2022 18:19:58: 52000000 INFO @ Tue, 02 Aug 2022 18:20:03: 59000000 INFO @ Tue, 02 Aug 2022 18:20:05: 58000000 INFO @ Tue, 02 Aug 2022 18:20:07: 53000000 INFO @ Tue, 02 Aug 2022 18:20:08: #1 tag size is determined as 144 bps INFO @ Tue, 02 Aug 2022 18:20:08: #1 tag size = 144 INFO @ Tue, 02 Aug 2022 18:20:08: #1 total tags in treatment: 26325402 INFO @ Tue, 02 Aug 2022 18:20:08: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:20:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:20:08: #1 tags after filtering in treatment: 22541506 INFO @ Tue, 02 Aug 2022 18:20:08: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 02 Aug 2022 18:20:08: #1 finished! INFO @ Tue, 02 Aug 2022 18:20:08: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:20:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:20:09: #2 number of paired peaks: 1097 INFO @ Tue, 02 Aug 2022 18:20:09: start model_add_line... INFO @ Tue, 02 Aug 2022 18:20:10: start X-correlation... INFO @ Tue, 02 Aug 2022 18:20:10: end of X-cor INFO @ Tue, 02 Aug 2022 18:20:10: #2 finished! INFO @ Tue, 02 Aug 2022 18:20:10: #2 predicted fragment length is 229 bps INFO @ Tue, 02 Aug 2022 18:20:10: #2 alternative fragment length(s) may be 229 bps INFO @ Tue, 02 Aug 2022 18:20:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.05_model.r WARNING @ Tue, 02 Aug 2022 18:20:10: #2 Since the d (229) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:20:10: #2 You may need to consider one of the other alternative d(s): 229 WARNING @ Tue, 02 Aug 2022 18:20:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:20:10: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:20:10: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:20:13: 59000000 INFO @ Tue, 02 Aug 2022 18:20:15: 54000000 INFO @ Tue, 02 Aug 2022 18:20:18: #1 tag size is determined as 144 bps INFO @ Tue, 02 Aug 2022 18:20:18: #1 tag size = 144 INFO @ Tue, 02 Aug 2022 18:20:18: #1 total tags in treatment: 26325402 INFO @ Tue, 02 Aug 2022 18:20:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:20:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:20:18: #1 tags after filtering in treatment: 22541506 INFO @ Tue, 02 Aug 2022 18:20:18: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 02 Aug 2022 18:20:18: #1 finished! INFO @ Tue, 02 Aug 2022 18:20:18: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:20:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:20:20: #2 number of paired peaks: 1097 INFO @ Tue, 02 Aug 2022 18:20:20: start model_add_line... INFO @ Tue, 02 Aug 2022 18:20:20: start X-correlation... INFO @ Tue, 02 Aug 2022 18:20:20: end of X-cor INFO @ Tue, 02 Aug 2022 18:20:20: #2 finished! INFO @ Tue, 02 Aug 2022 18:20:20: #2 predicted fragment length is 229 bps INFO @ Tue, 02 Aug 2022 18:20:20: #2 alternative fragment length(s) may be 229 bps INFO @ Tue, 02 Aug 2022 18:20:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.10_model.r WARNING @ Tue, 02 Aug 2022 18:20:20: #2 Since the d (229) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:20:20: #2 You may need to consider one of the other alternative d(s): 229 WARNING @ Tue, 02 Aug 2022 18:20:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:20:20: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:20:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:20:23: 55000000 INFO @ Tue, 02 Aug 2022 18:20:30: 56000000 INFO @ Tue, 02 Aug 2022 18:20:38: 57000000 INFO @ Tue, 02 Aug 2022 18:20:45: 58000000 INFO @ Tue, 02 Aug 2022 18:20:52: 59000000 INFO @ Tue, 02 Aug 2022 18:20:55: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:20:56: #1 tag size is determined as 144 bps INFO @ Tue, 02 Aug 2022 18:20:56: #1 tag size = 144 INFO @ Tue, 02 Aug 2022 18:20:56: #1 total tags in treatment: 26325402 INFO @ Tue, 02 Aug 2022 18:20:56: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:20:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:20:56: #1 tags after filtering in treatment: 22541506 INFO @ Tue, 02 Aug 2022 18:20:56: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 02 Aug 2022 18:20:56: #1 finished! INFO @ Tue, 02 Aug 2022 18:20:56: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:20:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:20:58: #2 number of paired peaks: 1097 INFO @ Tue, 02 Aug 2022 18:20:58: start model_add_line... INFO @ Tue, 02 Aug 2022 18:20:58: start X-correlation... INFO @ Tue, 02 Aug 2022 18:20:58: end of X-cor INFO @ Tue, 02 Aug 2022 18:20:58: #2 finished! INFO @ Tue, 02 Aug 2022 18:20:58: #2 predicted fragment length is 229 bps INFO @ Tue, 02 Aug 2022 18:20:58: #2 alternative fragment length(s) may be 229 bps INFO @ Tue, 02 Aug 2022 18:20:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.20_model.r WARNING @ Tue, 02 Aug 2022 18:20:58: #2 Since the d (229) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:20:58: #2 You may need to consider one of the other alternative d(s): 229 WARNING @ Tue, 02 Aug 2022 18:20:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:20:58: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:20:58: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:21:04: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:21:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:21:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:21:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.05_summits.bed INFO @ Tue, 02 Aug 2022 18:21:16: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (4534 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:21:24: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:21:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:21:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.10_summits.bed INFO @ Tue, 02 Aug 2022 18:21:25: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2819 records, 4 fields): 32 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:21:42: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:22:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:22:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:22:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX11499362/SRX11499362.20_summits.bed INFO @ Tue, 02 Aug 2022 18:22:03: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (1898 records, 4 fields): 20 millis CompletedMACS2peakCalling