Job ID = 10480652 sra ファイルのダウンロード中... Completed: 598319K bytes transferred in 8 seconds (605514K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 24729076 spots for /home/okishinya/chipatlas/results/dm3/SRX1115697/SRR2124126.sra Written 24729076 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:08:13 24729076 reads; of these: 24729076 (100.00%) were unpaired; of these: 783177 (3.17%) aligned 0 times 18259729 (73.84%) aligned exactly 1 time 5686170 (22.99%) aligned >1 times 96.83% overall alignment rate Time searching: 00:08:14 Overall time: 00:08:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 12 files... [bam_rmdupse_core] 2652059 / 23945899 = 0.1108 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 16 Mar 2018 07:38:32: # Command line: callpeak -t SRX1115697.bam -f BAM -g dm -n SRX1115697.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1115697.05 # format = BAM # ChIP-seq file = ['SRX1115697.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Mar 2018 07:38:32: #1 read tag files... INFO @ Fri, 16 Mar 2018 07:38:32: #1 read treatment tags... INFO @ Fri, 16 Mar 2018 07:38:32: # Command line: callpeak -t SRX1115697.bam -f BAM -g dm -n SRX1115697.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1115697.20 # format = BAM # ChIP-seq file = ['SRX1115697.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Mar 2018 07:38:32: #1 read tag files... INFO @ Fri, 16 Mar 2018 07:38:32: #1 read treatment tags... INFO @ Fri, 16 Mar 2018 07:38:32: # Command line: callpeak -t SRX1115697.bam -f BAM -g dm -n SRX1115697.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1115697.10 # format = BAM # ChIP-seq file = ['SRX1115697.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Mar 2018 07:38:32: #1 read tag files... INFO @ Fri, 16 Mar 2018 07:38:32: #1 read treatment tags... INFO @ Fri, 16 Mar 2018 07:38:39: 1000000 INFO @ Fri, 16 Mar 2018 07:38:39: 1000000 INFO @ Fri, 16 Mar 2018 07:38:40: 1000000 INFO @ Fri, 16 Mar 2018 07:38:47: 2000000 INFO @ Fri, 16 Mar 2018 07:38:48: 2000000 INFO @ Fri, 16 Mar 2018 07:38:48: 2000000 INFO @ Fri, 16 Mar 2018 07:38:54: 3000000 INFO @ Fri, 16 Mar 2018 07:38:55: 3000000 INFO @ Fri, 16 Mar 2018 07:38:57: 3000000 INFO @ Fri, 16 Mar 2018 07:39:01: 4000000 INFO @ Fri, 16 Mar 2018 07:39:02: 4000000 INFO @ Fri, 16 Mar 2018 07:39:06: 4000000 INFO @ Fri, 16 Mar 2018 07:39:09: 5000000 INFO @ Fri, 16 Mar 2018 07:39:10: 5000000 INFO @ Fri, 16 Mar 2018 07:39:15: 5000000 INFO @ Fri, 16 Mar 2018 07:39:16: 6000000 INFO @ Fri, 16 Mar 2018 07:39:17: 6000000 INFO @ Fri, 16 Mar 2018 07:39:23: 6000000 INFO @ Fri, 16 Mar 2018 07:39:23: 7000000 INFO @ Fri, 16 Mar 2018 07:39:26: 7000000 INFO @ Fri, 16 Mar 2018 07:39:30: 7000000 INFO @ Fri, 16 Mar 2018 07:39:31: 8000000 INFO @ Fri, 16 Mar 2018 07:39:37: 8000000 INFO @ Fri, 16 Mar 2018 07:39:38: 8000000 INFO @ Fri, 16 Mar 2018 07:39:38: 9000000 INFO @ Fri, 16 Mar 2018 07:39:45: 9000000 INFO @ Fri, 16 Mar 2018 07:39:45: 10000000 INFO @ Fri, 16 Mar 2018 07:39:46: 9000000 INFO @ Fri, 16 Mar 2018 07:39:52: 10000000 INFO @ Fri, 16 Mar 2018 07:39:53: 11000000 INFO @ Fri, 16 Mar 2018 07:39:53: 10000000 INFO @ Fri, 16 Mar 2018 07:40:00: 11000000 INFO @ Fri, 16 Mar 2018 07:40:01: 12000000 INFO @ Fri, 16 Mar 2018 07:40:02: 11000000 INFO @ Fri, 16 Mar 2018 07:40:08: 12000000 INFO @ Fri, 16 Mar 2018 07:40:09: 13000000 INFO @ Fri, 16 Mar 2018 07:40:10: 12000000 INFO @ Fri, 16 Mar 2018 07:40:16: 13000000 INFO @ Fri, 16 Mar 2018 07:40:16: 14000000 INFO @ Fri, 16 Mar 2018 07:40:17: 13000000 INFO @ Fri, 16 Mar 2018 07:40:23: 14000000 INFO @ Fri, 16 Mar 2018 07:40:23: 15000000 INFO @ Fri, 16 Mar 2018 07:40:24: 14000000 INFO @ Fri, 16 Mar 2018 07:40:30: 15000000 INFO @ Fri, 16 Mar 2018 07:40:31: 16000000 INFO @ Fri, 16 Mar 2018 07:40:31: 15000000 INFO @ Fri, 16 Mar 2018 07:40:37: 16000000 INFO @ Fri, 16 Mar 2018 07:40:38: 16000000 INFO @ Fri, 16 Mar 2018 07:40:38: 17000000 INFO @ Fri, 16 Mar 2018 07:40:44: 17000000 INFO @ Fri, 16 Mar 2018 07:40:45: 17000000 INFO @ Fri, 16 Mar 2018 07:40:45: 18000000 INFO @ Fri, 16 Mar 2018 07:40:51: 18000000 INFO @ Fri, 16 Mar 2018 07:40:52: 19000000 INFO @ Fri, 16 Mar 2018 07:40:52: 18000000 INFO @ Fri, 16 Mar 2018 07:40:58: 19000000 INFO @ Fri, 16 Mar 2018 07:41:00: 20000000 INFO @ Fri, 16 Mar 2018 07:41:00: 19000000 INFO @ Fri, 16 Mar 2018 07:41:05: 20000000 INFO @ Fri, 16 Mar 2018 07:41:07: 21000000 INFO @ Fri, 16 Mar 2018 07:41:07: 20000000 INFO @ Fri, 16 Mar 2018 07:41:09: #1 tag size is determined as 51 bps INFO @ Fri, 16 Mar 2018 07:41:09: #1 tag size = 51 INFO @ Fri, 16 Mar 2018 07:41:09: #1 total tags in treatment: 21293840 INFO @ Fri, 16 Mar 2018 07:41:09: #1 user defined the maximum tags... INFO @ Fri, 16 Mar 2018 07:41:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Mar 2018 07:41:09: #1 tags after filtering in treatment: 21293840 INFO @ Fri, 16 Mar 2018 07:41:09: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Mar 2018 07:41:09: #1 finished! INFO @ Fri, 16 Mar 2018 07:41:09: #2 Build Peak Model... INFO @ Fri, 16 Mar 2018 07:41:09: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Mar 2018 07:41:11: #2 number of paired peaks: 11 WARNING @ Fri, 16 Mar 2018 07:41:11: Too few paired peaks (11) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 16 Mar 2018 07:41:11: Process for pairing-model is terminated! cat: SRX1115697.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1115697.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1115697.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1115697.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Fri, 16 Mar 2018 07:41:12: 21000000 INFO @ Fri, 16 Mar 2018 07:41:14: #1 tag size is determined as 51 bps INFO @ Fri, 16 Mar 2018 07:41:14: #1 tag size = 51 INFO @ Fri, 16 Mar 2018 07:41:14: #1 total tags in treatment: 21293840 INFO @ Fri, 16 Mar 2018 07:41:14: #1 user defined the maximum tags... INFO @ Fri, 16 Mar 2018 07:41:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Mar 2018 07:41:14: 21000000 INFO @ Fri, 16 Mar 2018 07:41:15: #1 tags after filtering in treatment: 21293840 INFO @ Fri, 16 Mar 2018 07:41:15: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Mar 2018 07:41:15: #1 finished! INFO @ Fri, 16 Mar 2018 07:41:15: #2 Build Peak Model... INFO @ Fri, 16 Mar 2018 07:41:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Mar 2018 07:41:16: #2 number of paired peaks: 11 WARNING @ Fri, 16 Mar 2018 07:41:16: Too few paired peaks (11) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 16 Mar 2018 07:41:16: Process for pairing-model is terminated! cat: SRX1115697.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1115697.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1115697.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1115697.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Fri, 16 Mar 2018 07:41:17: #1 tag size is determined as 51 bps INFO @ Fri, 16 Mar 2018 07:41:17: #1 tag size = 51 INFO @ Fri, 16 Mar 2018 07:41:17: #1 total tags in treatment: 21293840 INFO @ Fri, 16 Mar 2018 07:41:17: #1 user defined the maximum tags... INFO @ Fri, 16 Mar 2018 07:41:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Mar 2018 07:41:17: #1 tags after filtering in treatment: 21293840 INFO @ Fri, 16 Mar 2018 07:41:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Mar 2018 07:41:17: #1 finished! INFO @ Fri, 16 Mar 2018 07:41:17: #2 Build Peak Model... INFO @ Fri, 16 Mar 2018 07:41:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Mar 2018 07:41:18: #2 number of paired peaks: 11 WARNING @ Fri, 16 Mar 2018 07:41:18: Too few paired peaks (11) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 16 Mar 2018 07:41:18: Process for pairing-model is terminated! cat: SRX1115697.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1115697.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1115697.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1115697.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。