Job ID = 16440064 SRX = SRX10855778 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 44873902 spots for SRR14509965/SRR14509965.sra Written 44873902 spots for SRR14509965/SRR14509965.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441793 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:04:36 44873902 reads; of these: 44873902 (100.00%) were paired; of these: 4078663 (9.09%) aligned concordantly 0 times 29504033 (65.75%) aligned concordantly exactly 1 time 11291206 (25.16%) aligned concordantly >1 times ---- 4078663 pairs aligned concordantly 0 times; of these: 1030066 (25.25%) aligned discordantly 1 time ---- 3048597 pairs aligned 0 times concordantly or discordantly; of these: 6097194 mates make up the pairs; of these: 3995704 (65.53%) aligned 0 times 1239685 (20.33%) aligned exactly 1 time 861805 (14.13%) aligned >1 times 95.55% overall alignment rate Time searching: 03:04:36 Overall time: 03:04:36 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 19312287 / 41493875 = 0.4654 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 20:35:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 20:35:54: #1 read tag files... INFO @ Tue, 02 Aug 2022 20:35:54: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 20:36:07: 1000000 INFO @ Tue, 02 Aug 2022 20:36:20: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 20:36:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 20:36:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 20:36:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 20:36:32: 3000000 INFO @ Tue, 02 Aug 2022 20:36:37: 1000000 INFO @ Tue, 02 Aug 2022 20:36:44: 4000000 INFO @ Tue, 02 Aug 2022 20:36:51: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 20:36:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 20:36:54: #1 read tag files... INFO @ Tue, 02 Aug 2022 20:36:54: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 20:36:56: 5000000 INFO @ Tue, 02 Aug 2022 20:37:06: 3000000 INFO @ Tue, 02 Aug 2022 20:37:08: 1000000 INFO @ Tue, 02 Aug 2022 20:37:09: 6000000 INFO @ Tue, 02 Aug 2022 20:37:20: 4000000 INFO @ Tue, 02 Aug 2022 20:37:22: 2000000 INFO @ Tue, 02 Aug 2022 20:37:22: 7000000 INFO @ Tue, 02 Aug 2022 20:37:35: 5000000 INFO @ Tue, 02 Aug 2022 20:37:36: 8000000 INFO @ Tue, 02 Aug 2022 20:37:37: 3000000 INFO @ Tue, 02 Aug 2022 20:37:49: 9000000 INFO @ Tue, 02 Aug 2022 20:37:50: 6000000 INFO @ Tue, 02 Aug 2022 20:37:52: 4000000 INFO @ Tue, 02 Aug 2022 20:38:03: 10000000 INFO @ Tue, 02 Aug 2022 20:38:05: 7000000 INFO @ Tue, 02 Aug 2022 20:38:06: 5000000 INFO @ Tue, 02 Aug 2022 20:38:16: 11000000 INFO @ Tue, 02 Aug 2022 20:38:21: 8000000 INFO @ Tue, 02 Aug 2022 20:38:21: 6000000 INFO @ Tue, 02 Aug 2022 20:38:29: 12000000 INFO @ Tue, 02 Aug 2022 20:38:36: 9000000 INFO @ Tue, 02 Aug 2022 20:38:37: 7000000 INFO @ Tue, 02 Aug 2022 20:38:43: 13000000 INFO @ Tue, 02 Aug 2022 20:38:51: 10000000 INFO @ Tue, 02 Aug 2022 20:38:52: 8000000 INFO @ Tue, 02 Aug 2022 20:38:56: 14000000 INFO @ Tue, 02 Aug 2022 20:39:06: 9000000 INFO @ Tue, 02 Aug 2022 20:39:07: 11000000 INFO @ Tue, 02 Aug 2022 20:39:08: 15000000 INFO @ Tue, 02 Aug 2022 20:39:21: 16000000 INFO @ Tue, 02 Aug 2022 20:39:21: 10000000 INFO @ Tue, 02 Aug 2022 20:39:21: 12000000 INFO @ Tue, 02 Aug 2022 20:39:34: 17000000 INFO @ Tue, 02 Aug 2022 20:39:36: 11000000 INFO @ Tue, 02 Aug 2022 20:39:37: 13000000 INFO @ Tue, 02 Aug 2022 20:39:46: 18000000 INFO @ Tue, 02 Aug 2022 20:39:51: 12000000 INFO @ Tue, 02 Aug 2022 20:39:52: 14000000 INFO @ Tue, 02 Aug 2022 20:39:59: 19000000 INFO @ Tue, 02 Aug 2022 20:40:06: 13000000 INFO @ Tue, 02 Aug 2022 20:40:07: 15000000 INFO @ Tue, 02 Aug 2022 20:40:12: 20000000 INFO @ Tue, 02 Aug 2022 20:40:21: 14000000 INFO @ Tue, 02 Aug 2022 20:40:22: 16000000 INFO @ Tue, 02 Aug 2022 20:40:25: 21000000 INFO @ Tue, 02 Aug 2022 20:40:37: 15000000 INFO @ Tue, 02 Aug 2022 20:40:37: 17000000 INFO @ Tue, 02 Aug 2022 20:40:38: 22000000 INFO @ Tue, 02 Aug 2022 20:40:51: 23000000 INFO @ Tue, 02 Aug 2022 20:40:51: 16000000 INFO @ Tue, 02 Aug 2022 20:40:52: 18000000 INFO @ Tue, 02 Aug 2022 20:41:04: 24000000 INFO @ Tue, 02 Aug 2022 20:41:06: 17000000 INFO @ Tue, 02 Aug 2022 20:41:06: 19000000 INFO @ Tue, 02 Aug 2022 20:41:18: 25000000 INFO @ Tue, 02 Aug 2022 20:41:21: 18000000 INFO @ Tue, 02 Aug 2022 20:41:22: 20000000 INFO @ Tue, 02 Aug 2022 20:41:30: 26000000 INFO @ Tue, 02 Aug 2022 20:41:35: 19000000 INFO @ Tue, 02 Aug 2022 20:41:36: 21000000 INFO @ Tue, 02 Aug 2022 20:41:41: 27000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 20:41:49: 20000000 INFO @ Tue, 02 Aug 2022 20:41:50: 22000000 INFO @ Tue, 02 Aug 2022 20:41:53: 28000000 INFO @ Tue, 02 Aug 2022 20:42:03: 21000000 INFO @ Tue, 02 Aug 2022 20:42:04: 23000000 INFO @ Tue, 02 Aug 2022 20:42:05: 29000000 INFO @ Tue, 02 Aug 2022 20:42:16: 30000000 INFO @ Tue, 02 Aug 2022 20:42:17: 22000000 INFO @ Tue, 02 Aug 2022 20:42:18: 24000000 INFO @ Tue, 02 Aug 2022 20:42:27: 31000000 INFO @ Tue, 02 Aug 2022 20:42:30: 23000000 INFO @ Tue, 02 Aug 2022 20:42:31: 25000000 INFO @ Tue, 02 Aug 2022 20:42:39: 32000000 INFO @ Tue, 02 Aug 2022 20:42:44: 24000000 INFO @ Tue, 02 Aug 2022 20:42:45: 26000000 INFO @ Tue, 02 Aug 2022 20:42:51: 33000000 INFO @ Tue, 02 Aug 2022 20:42:58: 25000000 INFO @ Tue, 02 Aug 2022 20:42:59: 27000000 INFO @ Tue, 02 Aug 2022 20:43:01: 34000000 INFO @ Tue, 02 Aug 2022 20:43:11: 26000000 INFO @ Tue, 02 Aug 2022 20:43:12: 35000000 INFO @ Tue, 02 Aug 2022 20:43:13: 28000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 20:43:23: 36000000 INFO @ Tue, 02 Aug 2022 20:43:25: 27000000 INFO @ Tue, 02 Aug 2022 20:43:28: 29000000 INFO @ Tue, 02 Aug 2022 20:43:35: 37000000 INFO @ Tue, 02 Aug 2022 20:43:38: 28000000 INFO @ Tue, 02 Aug 2022 20:43:42: 30000000 INFO @ Tue, 02 Aug 2022 20:43:47: 38000000 INFO @ Tue, 02 Aug 2022 20:43:52: 29000000 INFO @ Tue, 02 Aug 2022 20:43:57: 31000000 INFO @ Tue, 02 Aug 2022 20:43:58: 39000000 INFO @ Tue, 02 Aug 2022 20:44:05: 30000000 INFO @ Tue, 02 Aug 2022 20:44:10: 40000000 INFO @ Tue, 02 Aug 2022 20:44:12: 32000000 INFO @ Tue, 02 Aug 2022 20:44:19: 31000000 INFO @ Tue, 02 Aug 2022 20:44:21: 41000000 INFO @ Tue, 02 Aug 2022 20:44:27: 33000000 INFO @ Tue, 02 Aug 2022 20:44:32: 42000000 INFO @ Tue, 02 Aug 2022 20:44:33: 32000000 INFO @ Tue, 02 Aug 2022 20:44:43: 34000000 INFO @ Tue, 02 Aug 2022 20:44:43: 43000000 INFO @ Tue, 02 Aug 2022 20:44:46: 33000000 INFO @ Tue, 02 Aug 2022 20:44:54: 44000000 INFO @ Tue, 02 Aug 2022 20:44:57: 35000000 INFO @ Tue, 02 Aug 2022 20:45:00: 34000000 INFO @ Tue, 02 Aug 2022 20:45:05: 45000000 INFO @ Tue, 02 Aug 2022 20:45:12: 36000000 INFO @ Tue, 02 Aug 2022 20:45:14: 35000000 INFO @ Tue, 02 Aug 2022 20:45:17: 46000000 INFO @ Tue, 02 Aug 2022 20:45:27: 36000000 INFO @ Tue, 02 Aug 2022 20:45:27: 37000000 INFO @ Tue, 02 Aug 2022 20:45:27: 47000000 INFO @ Tue, 02 Aug 2022 20:45:29: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 20:45:29: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 20:45:29: #1 total tags in treatment: 21762035 INFO @ Tue, 02 Aug 2022 20:45:29: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 20:45:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 20:45:29: #1 tags after filtering in treatment: 15284970 INFO @ Tue, 02 Aug 2022 20:45:29: #1 Redundant rate of treatment: 0.30 INFO @ Tue, 02 Aug 2022 20:45:29: #1 finished! INFO @ Tue, 02 Aug 2022 20:45:29: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 20:45:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 20:45:31: #2 number of paired peaks: 610 WARNING @ Tue, 02 Aug 2022 20:45:31: Fewer paired peaks (610) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 610 pairs to build model! INFO @ Tue, 02 Aug 2022 20:45:31: start model_add_line... INFO @ Tue, 02 Aug 2022 20:45:31: start X-correlation... INFO @ Tue, 02 Aug 2022 20:45:31: end of X-cor INFO @ Tue, 02 Aug 2022 20:45:31: #2 finished! INFO @ Tue, 02 Aug 2022 20:45:31: #2 predicted fragment length is 159 bps INFO @ Tue, 02 Aug 2022 20:45:31: #2 alternative fragment length(s) may be 2,100,121,127,159 bps INFO @ Tue, 02 Aug 2022 20:45:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.05_model.r WARNING @ Tue, 02 Aug 2022 20:45:31: #2 Since the d (159) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 20:45:31: #2 You may need to consider one of the other alternative d(s): 2,100,121,127,159 WARNING @ Tue, 02 Aug 2022 20:45:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 20:45:31: #3 Call peaks... INFO @ Tue, 02 Aug 2022 20:45:31: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 20:45:40: 37000000 INFO @ Tue, 02 Aug 2022 20:45:41: 38000000 INFO @ Tue, 02 Aug 2022 20:45:52: 38000000 INFO @ Tue, 02 Aug 2022 20:45:56: 39000000 INFO @ Tue, 02 Aug 2022 20:46:07: 39000000 INFO @ Tue, 02 Aug 2022 20:46:10: 40000000 INFO @ Tue, 02 Aug 2022 20:46:15: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 20:46:22: 40000000 INFO @ Tue, 02 Aug 2022 20:46:24: 41000000 INFO @ Tue, 02 Aug 2022 20:46:37: 41000000 INFO @ Tue, 02 Aug 2022 20:46:38: 42000000 INFO @ Tue, 02 Aug 2022 20:46:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.05_peaks.xls INFO @ Tue, 02 Aug 2022 20:46:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 20:46:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.05_summits.bed INFO @ Tue, 02 Aug 2022 20:46:39: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6454 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 20:46:52: 42000000 INFO @ Tue, 02 Aug 2022 20:46:53: 43000000 INFO @ Tue, 02 Aug 2022 20:47:06: 43000000 INFO @ Tue, 02 Aug 2022 20:47:07: 44000000 INFO @ Tue, 02 Aug 2022 20:47:20: 44000000 INFO @ Tue, 02 Aug 2022 20:47:21: 45000000 INFO @ Tue, 02 Aug 2022 20:47:35: 45000000 INFO @ Tue, 02 Aug 2022 20:47:36: 46000000 INFO @ Tue, 02 Aug 2022 20:47:50: 47000000 INFO @ Tue, 02 Aug 2022 20:47:50: 46000000 INFO @ Tue, 02 Aug 2022 20:47:52: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 20:47:52: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 20:47:52: #1 total tags in treatment: 21762035 INFO @ Tue, 02 Aug 2022 20:47:52: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 20:47:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 20:47:52: #1 tags after filtering in treatment: 15284970 INFO @ Tue, 02 Aug 2022 20:47:52: #1 Redundant rate of treatment: 0.30 INFO @ Tue, 02 Aug 2022 20:47:52: #1 finished! INFO @ Tue, 02 Aug 2022 20:47:52: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 20:47:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 20:47:54: #2 number of paired peaks: 610 WARNING @ Tue, 02 Aug 2022 20:47:54: Fewer paired peaks (610) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 610 pairs to build model! INFO @ Tue, 02 Aug 2022 20:47:54: start model_add_line... INFO @ Tue, 02 Aug 2022 20:47:54: start X-correlation... INFO @ Tue, 02 Aug 2022 20:47:54: end of X-cor INFO @ Tue, 02 Aug 2022 20:47:54: #2 finished! INFO @ Tue, 02 Aug 2022 20:47:54: #2 predicted fragment length is 159 bps INFO @ Tue, 02 Aug 2022 20:47:54: #2 alternative fragment length(s) may be 2,100,121,127,159 bps INFO @ Tue, 02 Aug 2022 20:47:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.10_model.r WARNING @ Tue, 02 Aug 2022 20:47:54: #2 Since the d (159) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 20:47:54: #2 You may need to consider one of the other alternative d(s): 2,100,121,127,159 WARNING @ Tue, 02 Aug 2022 20:47:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 20:47:54: #3 Call peaks... INFO @ Tue, 02 Aug 2022 20:47:54: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 20:48:06: 47000000 INFO @ Tue, 02 Aug 2022 20:48:08: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 20:48:08: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 20:48:08: #1 total tags in treatment: 21762035 INFO @ Tue, 02 Aug 2022 20:48:08: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 20:48:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 20:48:08: #1 tags after filtering in treatment: 15284970 INFO @ Tue, 02 Aug 2022 20:48:08: #1 Redundant rate of treatment: 0.30 INFO @ Tue, 02 Aug 2022 20:48:08: #1 finished! INFO @ Tue, 02 Aug 2022 20:48:08: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 20:48:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 20:48:10: #2 number of paired peaks: 610 WARNING @ Tue, 02 Aug 2022 20:48:10: Fewer paired peaks (610) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 610 pairs to build model! INFO @ Tue, 02 Aug 2022 20:48:10: start model_add_line... INFO @ Tue, 02 Aug 2022 20:48:10: start X-correlation... INFO @ Tue, 02 Aug 2022 20:48:11: end of X-cor INFO @ Tue, 02 Aug 2022 20:48:11: #2 finished! INFO @ Tue, 02 Aug 2022 20:48:11: #2 predicted fragment length is 159 bps INFO @ Tue, 02 Aug 2022 20:48:11: #2 alternative fragment length(s) may be 2,100,121,127,159 bps INFO @ Tue, 02 Aug 2022 20:48:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.20_model.r WARNING @ Tue, 02 Aug 2022 20:48:11: #2 Since the d (159) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 20:48:11: #2 You may need to consider one of the other alternative d(s): 2,100,121,127,159 WARNING @ Tue, 02 Aug 2022 20:48:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 20:48:11: #3 Call peaks... INFO @ Tue, 02 Aug 2022 20:48:11: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 20:48:38: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 20:48:54: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 20:49:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.10_peaks.xls INFO @ Tue, 02 Aug 2022 20:49:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 20:49:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.10_summits.bed INFO @ Tue, 02 Aug 2022 20:49:03: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (2473 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 20:49:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.20_peaks.xls INFO @ Tue, 02 Aug 2022 20:49:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 20:49:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855778/SRX10855778.20_summits.bed INFO @ Tue, 02 Aug 2022 20:49:19: Done! pass1 - making usageList (10 chroms): 1 millis pass2 - checking and writing primary data (727 records, 4 fields): 5 millis CompletedMACS2peakCalling