Job ID = 16440017 SRX = SRX10447586 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 29412983 spots for SRR14073301/SRR14073301.sra Written 29412983 spots for SRR14073301/SRR14073301.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440116 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:26:55 29412983 reads; of these: 29412983 (100.00%) were paired; of these: 2065202 (7.02%) aligned concordantly 0 times 25013318 (85.04%) aligned concordantly exactly 1 time 2334463 (7.94%) aligned concordantly >1 times ---- 2065202 pairs aligned concordantly 0 times; of these: 227384 (11.01%) aligned discordantly 1 time ---- 1837818 pairs aligned 0 times concordantly or discordantly; of these: 3675636 mates make up the pairs; of these: 3219121 (87.58%) aligned 0 times 378055 (10.29%) aligned exactly 1 time 78460 (2.13%) aligned >1 times 94.53% overall alignment rate Time searching: 00:26:56 Overall time: 00:26:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3948355 / 27540216 = 0.1434 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:21:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:21:15: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:21:15: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:21:21: 1000000 INFO @ Tue, 02 Aug 2022 17:21:27: 2000000 INFO @ Tue, 02 Aug 2022 17:21:32: 3000000 INFO @ Tue, 02 Aug 2022 17:21:38: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:21:43: 5000000 INFO @ Tue, 02 Aug 2022 17:21:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:21:44: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:21:44: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:21:50: 6000000 INFO @ Tue, 02 Aug 2022 17:21:51: 1000000 INFO @ Tue, 02 Aug 2022 17:21:56: 7000000 INFO @ Tue, 02 Aug 2022 17:21:57: 2000000 INFO @ Tue, 02 Aug 2022 17:22:02: 8000000 INFO @ Tue, 02 Aug 2022 17:22:03: 3000000 INFO @ Tue, 02 Aug 2022 17:22:08: 9000000 INFO @ Tue, 02 Aug 2022 17:22:09: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:22:14: 10000000 INFO @ Tue, 02 Aug 2022 17:22:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:22:14: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:22:14: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:22:15: 5000000 INFO @ Tue, 02 Aug 2022 17:22:20: 11000000 INFO @ Tue, 02 Aug 2022 17:22:21: 6000000 INFO @ Tue, 02 Aug 2022 17:22:21: 1000000 INFO @ Tue, 02 Aug 2022 17:22:26: 12000000 INFO @ Tue, 02 Aug 2022 17:22:27: 7000000 INFO @ Tue, 02 Aug 2022 17:22:28: 2000000 INFO @ Tue, 02 Aug 2022 17:22:32: 13000000 INFO @ Tue, 02 Aug 2022 17:22:34: 8000000 INFO @ Tue, 02 Aug 2022 17:22:34: 3000000 INFO @ Tue, 02 Aug 2022 17:22:38: 14000000 INFO @ Tue, 02 Aug 2022 17:22:41: 9000000 INFO @ Tue, 02 Aug 2022 17:22:41: 4000000 INFO @ Tue, 02 Aug 2022 17:22:44: 15000000 INFO @ Tue, 02 Aug 2022 17:22:47: 10000000 INFO @ Tue, 02 Aug 2022 17:22:47: 5000000 INFO @ Tue, 02 Aug 2022 17:22:50: 16000000 INFO @ Tue, 02 Aug 2022 17:22:54: 11000000 INFO @ Tue, 02 Aug 2022 17:22:54: 6000000 INFO @ Tue, 02 Aug 2022 17:22:56: 17000000 INFO @ Tue, 02 Aug 2022 17:23:00: 7000000 INFO @ Tue, 02 Aug 2022 17:23:00: 12000000 INFO @ Tue, 02 Aug 2022 17:23:02: 18000000 INFO @ Tue, 02 Aug 2022 17:23:06: 8000000 INFO @ Tue, 02 Aug 2022 17:23:07: 13000000 INFO @ Tue, 02 Aug 2022 17:23:08: 19000000 INFO @ Tue, 02 Aug 2022 17:23:12: 9000000 INFO @ Tue, 02 Aug 2022 17:23:13: 14000000 INFO @ Tue, 02 Aug 2022 17:23:14: 20000000 INFO @ Tue, 02 Aug 2022 17:23:19: 10000000 INFO @ Tue, 02 Aug 2022 17:23:21: 15000000 INFO @ Tue, 02 Aug 2022 17:23:21: 21000000 INFO @ Tue, 02 Aug 2022 17:23:26: 11000000 INFO @ Tue, 02 Aug 2022 17:23:27: 22000000 INFO @ Tue, 02 Aug 2022 17:23:28: 16000000 INFO @ Tue, 02 Aug 2022 17:23:32: 12000000 INFO @ Tue, 02 Aug 2022 17:23:34: 23000000 INFO @ Tue, 02 Aug 2022 17:23:35: 17000000 INFO @ Tue, 02 Aug 2022 17:23:39: 13000000 INFO @ Tue, 02 Aug 2022 17:23:40: 24000000 INFO @ Tue, 02 Aug 2022 17:23:42: 18000000 INFO @ Tue, 02 Aug 2022 17:23:46: 14000000 INFO @ Tue, 02 Aug 2022 17:23:47: 25000000 INFO @ Tue, 02 Aug 2022 17:23:50: 19000000 INFO @ Tue, 02 Aug 2022 17:23:53: 15000000 INFO @ Tue, 02 Aug 2022 17:23:53: 26000000 INFO @ Tue, 02 Aug 2022 17:23:57: 20000000 INFO @ Tue, 02 Aug 2022 17:23:59: 16000000 INFO @ Tue, 02 Aug 2022 17:24:00: 27000000 INFO @ Tue, 02 Aug 2022 17:24:04: 21000000 INFO @ Tue, 02 Aug 2022 17:24:06: 17000000 INFO @ Tue, 02 Aug 2022 17:24:06: 28000000 INFO @ Tue, 02 Aug 2022 17:24:11: 22000000 INFO @ Tue, 02 Aug 2022 17:24:12: 29000000 INFO @ Tue, 02 Aug 2022 17:24:13: 18000000 INFO @ Tue, 02 Aug 2022 17:24:18: 23000000 INFO @ Tue, 02 Aug 2022 17:24:19: 30000000 INFO @ Tue, 02 Aug 2022 17:24:19: 19000000 INFO @ Tue, 02 Aug 2022 17:24:25: 31000000 INFO @ Tue, 02 Aug 2022 17:24:25: 24000000 INFO @ Tue, 02 Aug 2022 17:24:26: 20000000 INFO @ Tue, 02 Aug 2022 17:24:32: 32000000 INFO @ Tue, 02 Aug 2022 17:24:32: 21000000 INFO @ Tue, 02 Aug 2022 17:24:32: 25000000 INFO @ Tue, 02 Aug 2022 17:24:38: 33000000 INFO @ Tue, 02 Aug 2022 17:24:39: 22000000 INFO @ Tue, 02 Aug 2022 17:24:39: 26000000 INFO @ Tue, 02 Aug 2022 17:24:45: 34000000 INFO @ Tue, 02 Aug 2022 17:24:45: 23000000 INFO @ Tue, 02 Aug 2022 17:24:47: 27000000 INFO @ Tue, 02 Aug 2022 17:24:51: 35000000 INFO @ Tue, 02 Aug 2022 17:24:52: 24000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 17:24:54: 28000000 INFO @ Tue, 02 Aug 2022 17:24:57: 36000000 INFO @ Tue, 02 Aug 2022 17:24:58: 25000000 INFO @ Tue, 02 Aug 2022 17:25:01: 29000000 INFO @ Tue, 02 Aug 2022 17:25:04: 37000000 INFO @ Tue, 02 Aug 2022 17:25:04: 26000000 INFO @ Tue, 02 Aug 2022 17:25:08: 30000000 INFO @ Tue, 02 Aug 2022 17:25:10: 38000000 INFO @ Tue, 02 Aug 2022 17:25:11: 27000000 INFO @ Tue, 02 Aug 2022 17:25:15: 31000000 INFO @ Tue, 02 Aug 2022 17:25:17: 39000000 INFO @ Tue, 02 Aug 2022 17:25:17: 28000000 INFO @ Tue, 02 Aug 2022 17:25:23: 32000000 INFO @ Tue, 02 Aug 2022 17:25:23: 40000000 INFO @ Tue, 02 Aug 2022 17:25:23: 29000000 INFO @ Tue, 02 Aug 2022 17:25:30: 41000000 INFO @ Tue, 02 Aug 2022 17:25:30: 30000000 INFO @ Tue, 02 Aug 2022 17:25:30: 33000000 INFO @ Tue, 02 Aug 2022 17:25:36: 42000000 INFO @ Tue, 02 Aug 2022 17:25:36: 31000000 INFO @ Tue, 02 Aug 2022 17:25:37: 34000000 INFO @ Tue, 02 Aug 2022 17:25:42: 43000000 INFO @ Tue, 02 Aug 2022 17:25:43: 32000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 17:25:44: 35000000 INFO @ Tue, 02 Aug 2022 17:25:49: 44000000 INFO @ Tue, 02 Aug 2022 17:25:49: 33000000 INFO @ Tue, 02 Aug 2022 17:25:51: 36000000 INFO @ Tue, 02 Aug 2022 17:25:55: 45000000 INFO @ Tue, 02 Aug 2022 17:25:55: 34000000 INFO @ Tue, 02 Aug 2022 17:25:58: 37000000 INFO @ Tue, 02 Aug 2022 17:26:02: 46000000 INFO @ Tue, 02 Aug 2022 17:26:02: 35000000 INFO @ Tue, 02 Aug 2022 17:26:05: 38000000 INFO @ Tue, 02 Aug 2022 17:26:08: 47000000 INFO @ Tue, 02 Aug 2022 17:26:08: 36000000 INFO @ Tue, 02 Aug 2022 17:26:12: 39000000 INFO @ Tue, 02 Aug 2022 17:26:13: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 17:26:13: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 17:26:13: #1 total tags in treatment: 23416336 INFO @ Tue, 02 Aug 2022 17:26:13: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:26:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:26:13: #1 tags after filtering in treatment: 14130119 INFO @ Tue, 02 Aug 2022 17:26:13: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 02 Aug 2022 17:26:13: #1 finished! INFO @ Tue, 02 Aug 2022 17:26:13: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:26:13: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:26:14: #2 number of paired peaks: 438 WARNING @ Tue, 02 Aug 2022 17:26:14: Fewer paired peaks (438) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 438 pairs to build model! INFO @ Tue, 02 Aug 2022 17:26:14: start model_add_line... INFO @ Tue, 02 Aug 2022 17:26:14: start X-correlation... INFO @ Tue, 02 Aug 2022 17:26:14: end of X-cor INFO @ Tue, 02 Aug 2022 17:26:14: #2 finished! INFO @ Tue, 02 Aug 2022 17:26:14: #2 predicted fragment length is 83 bps INFO @ Tue, 02 Aug 2022 17:26:14: #2 alternative fragment length(s) may be 83 bps INFO @ Tue, 02 Aug 2022 17:26:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.05_model.r WARNING @ Tue, 02 Aug 2022 17:26:14: #2 Since the d (83) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:26:14: #2 You may need to consider one of the other alternative d(s): 83 WARNING @ Tue, 02 Aug 2022 17:26:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:26:14: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:26:14: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:26:14: 37000000 INFO @ Tue, 02 Aug 2022 17:26:20: 40000000 INFO @ Tue, 02 Aug 2022 17:26:21: 38000000 INFO @ Tue, 02 Aug 2022 17:26:27: 41000000 INFO @ Tue, 02 Aug 2022 17:26:27: 39000000 INFO @ Tue, 02 Aug 2022 17:26:33: 40000000 INFO @ Tue, 02 Aug 2022 17:26:34: 42000000 INFO @ Tue, 02 Aug 2022 17:26:40: 41000000 INFO @ Tue, 02 Aug 2022 17:26:40: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:26:41: 43000000 INFO @ Tue, 02 Aug 2022 17:26:46: 42000000 INFO @ Tue, 02 Aug 2022 17:26:48: 44000000 INFO @ Tue, 02 Aug 2022 17:26:52: 43000000 INFO @ Tue, 02 Aug 2022 17:26:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.05_peaks.xls INFO @ Tue, 02 Aug 2022 17:26:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:26:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.05_summits.bed INFO @ Tue, 02 Aug 2022 17:26:54: Done! INFO @ Tue, 02 Aug 2022 17:26:55: 45000000 pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (19584 records, 4 fields): 49 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:26:58: 44000000 INFO @ Tue, 02 Aug 2022 17:27:02: 46000000 INFO @ Tue, 02 Aug 2022 17:27:05: 45000000 INFO @ Tue, 02 Aug 2022 17:27:09: 47000000 INFO @ Tue, 02 Aug 2022 17:27:11: 46000000 INFO @ Tue, 02 Aug 2022 17:27:14: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 17:27:14: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 17:27:14: #1 total tags in treatment: 23416336 INFO @ Tue, 02 Aug 2022 17:27:14: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:27:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:27:15: #1 tags after filtering in treatment: 14130119 INFO @ Tue, 02 Aug 2022 17:27:15: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 02 Aug 2022 17:27:15: #1 finished! INFO @ Tue, 02 Aug 2022 17:27:15: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:27:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:27:16: #2 number of paired peaks: 438 WARNING @ Tue, 02 Aug 2022 17:27:16: Fewer paired peaks (438) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 438 pairs to build model! INFO @ Tue, 02 Aug 2022 17:27:16: start model_add_line... INFO @ Tue, 02 Aug 2022 17:27:16: start X-correlation... INFO @ Tue, 02 Aug 2022 17:27:16: end of X-cor INFO @ Tue, 02 Aug 2022 17:27:16: #2 finished! INFO @ Tue, 02 Aug 2022 17:27:16: #2 predicted fragment length is 83 bps INFO @ Tue, 02 Aug 2022 17:27:16: #2 alternative fragment length(s) may be 83 bps INFO @ Tue, 02 Aug 2022 17:27:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.10_model.r WARNING @ Tue, 02 Aug 2022 17:27:16: #2 Since the d (83) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:27:16: #2 You may need to consider one of the other alternative d(s): 83 WARNING @ Tue, 02 Aug 2022 17:27:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:27:16: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:27:16: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:27:17: 47000000 INFO @ Tue, 02 Aug 2022 17:27:20: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 17:27:20: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 17:27:20: #1 total tags in treatment: 23416336 INFO @ Tue, 02 Aug 2022 17:27:20: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:27:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:27:21: #1 tags after filtering in treatment: 14130119 INFO @ Tue, 02 Aug 2022 17:27:21: #1 Redundant rate of treatment: 0.40 INFO @ Tue, 02 Aug 2022 17:27:21: #1 finished! INFO @ Tue, 02 Aug 2022 17:27:21: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:27:21: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:27:22: #2 number of paired peaks: 438 WARNING @ Tue, 02 Aug 2022 17:27:22: Fewer paired peaks (438) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 438 pairs to build model! INFO @ Tue, 02 Aug 2022 17:27:22: start model_add_line... INFO @ Tue, 02 Aug 2022 17:27:22: start X-correlation... INFO @ Tue, 02 Aug 2022 17:27:22: end of X-cor INFO @ Tue, 02 Aug 2022 17:27:22: #2 finished! INFO @ Tue, 02 Aug 2022 17:27:22: #2 predicted fragment length is 83 bps INFO @ Tue, 02 Aug 2022 17:27:22: #2 alternative fragment length(s) may be 83 bps INFO @ Tue, 02 Aug 2022 17:27:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.20_model.r WARNING @ Tue, 02 Aug 2022 17:27:22: #2 Since the d (83) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:27:22: #2 You may need to consider one of the other alternative d(s): 83 WARNING @ Tue, 02 Aug 2022 17:27:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:27:22: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:27:22: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:27:42: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:27:48: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:27:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.10_peaks.xls INFO @ Tue, 02 Aug 2022 17:27:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:27:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.10_summits.bed INFO @ Tue, 02 Aug 2022 17:27:57: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (8336 records, 4 fields): 31 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:28:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.20_peaks.xls INFO @ Tue, 02 Aug 2022 17:28:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:28:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10447586/SRX10447586.20_summits.bed INFO @ Tue, 02 Aug 2022 17:28:02: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (2017 records, 4 fields): 42 millis CompletedMACS2peakCalling