Job ID = 14167076 SRX = SRX10412058 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28056273 spots for SRR14035722/SRR14035722.sra Written 28056273 spots for SRR14035722/SRR14035722.sra fastq に変換しました。 bowtie でマッピング中... Your job 14167981 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:22:38 28056273 reads; of these: 28056273 (100.00%) were paired; of these: 3491465 (12.44%) aligned concordantly 0 times 16569217 (59.06%) aligned concordantly exactly 1 time 7995591 (28.50%) aligned concordantly >1 times ---- 3491465 pairs aligned concordantly 0 times; of these: 578245 (16.56%) aligned discordantly 1 time ---- 2913220 pairs aligned 0 times concordantly or discordantly; of these: 5826440 mates make up the pairs; of these: 4372863 (75.05%) aligned 0 times 446584 (7.66%) aligned exactly 1 time 1006993 (17.28%) aligned >1 times 92.21% overall alignment rate Time searching: 02:22:38 Overall time: 02:22:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5708062 / 25049307 = 0.2279 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:24:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:24:36: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:24:36: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:24:47: 1000000 INFO @ Fri, 10 Dec 2021 12:24:59: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:25:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:25:06: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:25:06: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:25:11: 3000000 INFO @ Fri, 10 Dec 2021 12:25:18: 1000000 INFO @ Fri, 10 Dec 2021 12:25:23: 4000000 INFO @ Fri, 10 Dec 2021 12:25:30: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:25:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:25:36: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:25:36: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:25:36: 5000000 INFO @ Fri, 10 Dec 2021 12:25:42: 3000000 INFO @ Fri, 10 Dec 2021 12:25:49: 1000000 INFO @ Fri, 10 Dec 2021 12:25:50: 6000000 INFO @ Fri, 10 Dec 2021 12:25:54: 4000000 INFO @ Fri, 10 Dec 2021 12:26:03: 2000000 INFO @ Fri, 10 Dec 2021 12:26:03: 7000000 INFO @ Fri, 10 Dec 2021 12:26:07: 5000000 INFO @ Fri, 10 Dec 2021 12:26:16: 8000000 INFO @ Fri, 10 Dec 2021 12:26:17: 3000000 INFO @ Fri, 10 Dec 2021 12:26:19: 6000000 INFO @ Fri, 10 Dec 2021 12:26:30: 9000000 INFO @ Fri, 10 Dec 2021 12:26:30: 4000000 INFO @ Fri, 10 Dec 2021 12:26:31: 7000000 INFO @ Fri, 10 Dec 2021 12:26:43: 10000000 INFO @ Fri, 10 Dec 2021 12:26:44: 5000000 INFO @ Fri, 10 Dec 2021 12:26:44: 8000000 INFO @ Fri, 10 Dec 2021 12:26:56: 9000000 INFO @ Fri, 10 Dec 2021 12:26:57: 11000000 INFO @ Fri, 10 Dec 2021 12:26:57: 6000000 INFO @ Fri, 10 Dec 2021 12:27:08: 10000000 INFO @ Fri, 10 Dec 2021 12:27:09: 12000000 INFO @ Fri, 10 Dec 2021 12:27:10: 7000000 INFO @ Fri, 10 Dec 2021 12:27:21: 11000000 INFO @ Fri, 10 Dec 2021 12:27:22: 13000000 INFO @ Fri, 10 Dec 2021 12:27:23: 8000000 INFO @ Fri, 10 Dec 2021 12:27:33: 12000000 INFO @ Fri, 10 Dec 2021 12:27:35: 14000000 INFO @ Fri, 10 Dec 2021 12:27:36: 9000000 INFO @ Fri, 10 Dec 2021 12:27:45: 13000000 INFO @ Fri, 10 Dec 2021 12:27:49: 15000000 INFO @ Fri, 10 Dec 2021 12:27:49: 10000000 INFO @ Fri, 10 Dec 2021 12:27:57: 14000000 INFO @ Fri, 10 Dec 2021 12:28:01: 16000000 INFO @ Fri, 10 Dec 2021 12:28:02: 11000000 INFO @ Fri, 10 Dec 2021 12:28:09: 15000000 INFO @ Fri, 10 Dec 2021 12:28:14: 17000000 INFO @ Fri, 10 Dec 2021 12:28:15: 12000000 INFO @ Fri, 10 Dec 2021 12:28:20: 16000000 INFO @ Fri, 10 Dec 2021 12:28:26: 18000000 INFO @ Fri, 10 Dec 2021 12:28:28: 13000000 INFO @ Fri, 10 Dec 2021 12:28:32: 17000000 INFO @ Fri, 10 Dec 2021 12:28:39: 19000000 INFO @ Fri, 10 Dec 2021 12:28:41: 14000000 INFO @ Fri, 10 Dec 2021 12:28:43: 18000000 INFO @ Fri, 10 Dec 2021 12:28:51: 20000000 INFO @ Fri, 10 Dec 2021 12:28:54: 15000000 INFO @ Fri, 10 Dec 2021 12:28:55: 19000000 INFO @ Fri, 10 Dec 2021 12:29:04: 21000000 INFO @ Fri, 10 Dec 2021 12:29:06: 20000000 INFO @ Fri, 10 Dec 2021 12:29:07: 16000000 INFO @ Fri, 10 Dec 2021 12:29:16: 22000000 INFO @ Fri, 10 Dec 2021 12:29:18: 21000000 INFO @ Fri, 10 Dec 2021 12:29:19: 17000000 INFO @ Fri, 10 Dec 2021 12:29:29: 23000000 INFO @ Fri, 10 Dec 2021 12:29:29: 22000000 INFO @ Fri, 10 Dec 2021 12:29:32: 18000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 12:29:41: 23000000 INFO @ Fri, 10 Dec 2021 12:29:42: 24000000 INFO @ Fri, 10 Dec 2021 12:29:45: 19000000 INFO @ Fri, 10 Dec 2021 12:29:53: 24000000 INFO @ Fri, 10 Dec 2021 12:29:55: 25000000 INFO @ Fri, 10 Dec 2021 12:29:57: 20000000 INFO @ Fri, 10 Dec 2021 12:30:04: 25000000 INFO @ Fri, 10 Dec 2021 12:30:07: 26000000 INFO @ Fri, 10 Dec 2021 12:30:10: 21000000 INFO @ Fri, 10 Dec 2021 12:30:16: 26000000 INFO @ Fri, 10 Dec 2021 12:30:20: 27000000 INFO @ Fri, 10 Dec 2021 12:30:23: 22000000 INFO @ Fri, 10 Dec 2021 12:30:28: 27000000 INFO @ Fri, 10 Dec 2021 12:30:33: 28000000 INFO @ Fri, 10 Dec 2021 12:30:36: 23000000 INFO @ Fri, 10 Dec 2021 12:30:39: 28000000 INFO @ Fri, 10 Dec 2021 12:30:46: 29000000 INFO @ Fri, 10 Dec 2021 12:30:51: 24000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 12:30:51: 29000000 INFO @ Fri, 10 Dec 2021 12:30:58: 30000000 INFO @ Fri, 10 Dec 2021 12:31:03: 30000000 INFO @ Fri, 10 Dec 2021 12:31:05: 25000000 INFO @ Fri, 10 Dec 2021 12:31:11: 31000000 INFO @ Fri, 10 Dec 2021 12:31:14: 31000000 INFO @ Fri, 10 Dec 2021 12:31:19: 26000000 INFO @ Fri, 10 Dec 2021 12:31:24: 32000000 INFO @ Fri, 10 Dec 2021 12:31:26: 32000000 INFO @ Fri, 10 Dec 2021 12:31:33: 27000000 INFO @ Fri, 10 Dec 2021 12:31:37: 33000000 INFO @ Fri, 10 Dec 2021 12:31:38: 33000000 INFO @ Fri, 10 Dec 2021 12:31:47: 28000000 INFO @ Fri, 10 Dec 2021 12:31:50: 34000000 INFO @ Fri, 10 Dec 2021 12:31:51: 34000000 INFO @ Fri, 10 Dec 2021 12:32:02: 29000000 INFO @ Fri, 10 Dec 2021 12:32:03: 35000000 INFO @ Fri, 10 Dec 2021 12:32:04: 35000000 INFO @ Fri, 10 Dec 2021 12:32:17: 30000000 INFO @ Fri, 10 Dec 2021 12:32:17: 36000000 INFO @ Fri, 10 Dec 2021 12:32:17: 36000000 INFO @ Fri, 10 Dec 2021 12:32:31: 37000000 INFO @ Fri, 10 Dec 2021 12:32:31: 31000000 INFO @ Fri, 10 Dec 2021 12:32:31: 37000000 INFO @ Fri, 10 Dec 2021 12:32:44: 38000000 INFO @ Fri, 10 Dec 2021 12:32:45: 38000000 INFO @ Fri, 10 Dec 2021 12:32:46: 32000000 INFO @ Fri, 10 Dec 2021 12:32:57: 39000000 INFO @ Fri, 10 Dec 2021 12:32:58: 39000000 INFO @ Fri, 10 Dec 2021 12:33:00: 33000000 INFO @ Fri, 10 Dec 2021 12:33:10: 40000000 INFO @ Fri, 10 Dec 2021 12:33:11: 40000000 INFO @ Fri, 10 Dec 2021 12:33:14: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:33:14: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:33:14: #1 total tags in treatment: 18949454 INFO @ Fri, 10 Dec 2021 12:33:14: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:33:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:33:15: #1 tags after filtering in treatment: 17250115 INFO @ Fri, 10 Dec 2021 12:33:15: #1 Redundant rate of treatment: 0.09 INFO @ Fri, 10 Dec 2021 12:33:15: #1 finished! INFO @ Fri, 10 Dec 2021 12:33:15: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:33:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:33:15: 34000000 INFO @ Fri, 10 Dec 2021 12:33:15: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:33:15: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:33:15: #1 total tags in treatment: 18949454 INFO @ Fri, 10 Dec 2021 12:33:15: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:33:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:33:15: #1 tags after filtering in treatment: 17250115 INFO @ Fri, 10 Dec 2021 12:33:15: #1 Redundant rate of treatment: 0.09 INFO @ Fri, 10 Dec 2021 12:33:15: #1 finished! INFO @ Fri, 10 Dec 2021 12:33:15: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:33:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:33:16: #2 number of paired peaks: 196 WARNING @ Fri, 10 Dec 2021 12:33:16: Fewer paired peaks (196) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 196 pairs to build model! INFO @ Fri, 10 Dec 2021 12:33:16: start model_add_line... INFO @ Fri, 10 Dec 2021 12:33:16: start X-correlation... INFO @ Fri, 10 Dec 2021 12:33:16: end of X-cor INFO @ Fri, 10 Dec 2021 12:33:16: #2 finished! INFO @ Fri, 10 Dec 2021 12:33:16: #2 predicted fragment length is 194 bps INFO @ Fri, 10 Dec 2021 12:33:16: #2 alternative fragment length(s) may be 194 bps INFO @ Fri, 10 Dec 2021 12:33:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.05_model.r WARNING @ Fri, 10 Dec 2021 12:33:16: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:33:16: #2 You may need to consider one of the other alternative d(s): 194 WARNING @ Fri, 10 Dec 2021 12:33:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:33:16: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:33:16: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:33:17: #2 number of paired peaks: 196 WARNING @ Fri, 10 Dec 2021 12:33:17: Fewer paired peaks (196) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 196 pairs to build model! INFO @ Fri, 10 Dec 2021 12:33:17: start model_add_line... INFO @ Fri, 10 Dec 2021 12:33:17: start X-correlation... INFO @ Fri, 10 Dec 2021 12:33:17: end of X-cor INFO @ Fri, 10 Dec 2021 12:33:17: #2 finished! INFO @ Fri, 10 Dec 2021 12:33:17: #2 predicted fragment length is 194 bps INFO @ Fri, 10 Dec 2021 12:33:17: #2 alternative fragment length(s) may be 194 bps INFO @ Fri, 10 Dec 2021 12:33:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.10_model.r WARNING @ Fri, 10 Dec 2021 12:33:17: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:33:17: #2 You may need to consider one of the other alternative d(s): 194 WARNING @ Fri, 10 Dec 2021 12:33:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:33:17: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:33:17: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:33:28: 35000000 INFO @ Fri, 10 Dec 2021 12:33:41: 36000000 INFO @ Fri, 10 Dec 2021 12:33:52: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:33:54: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:33:55: 37000000 INFO @ Fri, 10 Dec 2021 12:34:09: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.05_peaks.xls INFO @ Fri, 10 Dec 2021 12:34:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:34:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.05_summits.bed INFO @ Fri, 10 Dec 2021 12:34:09: Done! INFO @ Fri, 10 Dec 2021 12:34:09: 38000000 pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6582 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 12:34:13: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.10_peaks.xls INFO @ Fri, 10 Dec 2021 12:34:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:34:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.10_summits.bed INFO @ Fri, 10 Dec 2021 12:34:13: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (3872 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 12:34:22: 39000000 INFO @ Fri, 10 Dec 2021 12:34:34: 40000000 INFO @ Fri, 10 Dec 2021 12:34:37: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:34:37: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:34:37: #1 total tags in treatment: 18949454 INFO @ Fri, 10 Dec 2021 12:34:37: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:34:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:34:38: #1 tags after filtering in treatment: 17250115 INFO @ Fri, 10 Dec 2021 12:34:38: #1 Redundant rate of treatment: 0.09 INFO @ Fri, 10 Dec 2021 12:34:38: #1 finished! INFO @ Fri, 10 Dec 2021 12:34:38: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:34:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:34:39: #2 number of paired peaks: 196 WARNING @ Fri, 10 Dec 2021 12:34:39: Fewer paired peaks (196) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 196 pairs to build model! INFO @ Fri, 10 Dec 2021 12:34:39: start model_add_line... INFO @ Fri, 10 Dec 2021 12:34:39: start X-correlation... INFO @ Fri, 10 Dec 2021 12:34:39: end of X-cor INFO @ Fri, 10 Dec 2021 12:34:39: #2 finished! INFO @ Fri, 10 Dec 2021 12:34:39: #2 predicted fragment length is 194 bps INFO @ Fri, 10 Dec 2021 12:34:39: #2 alternative fragment length(s) may be 194 bps INFO @ Fri, 10 Dec 2021 12:34:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.20_model.r WARNING @ Fri, 10 Dec 2021 12:34:39: #2 Since the d (194) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:34:39: #2 You may need to consider one of the other alternative d(s): 194 WARNING @ Fri, 10 Dec 2021 12:34:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:34:39: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:34:39: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:35:13: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:35:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.20_peaks.xls INFO @ Fri, 10 Dec 2021 12:35:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:35:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412058/SRX10412058.20_summits.bed INFO @ Fri, 10 Dec 2021 12:35:30: Done! pass1 - making usageList (14 chroms): 0 millis pass2 - checking and writing primary data (1649 records, 4 fields): 4 millis CompletedMACS2peakCalling