Job ID = 14171529 SRX = SRX10386204 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28282750 spots for SRR14009269/SRR14009269.sra Written 28282750 spots for SRR14009269/SRR14009269.sra fastq に変換しました。 bowtie でマッピング中... Your job 14172214 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:55:05 28282750 reads; of these: 28282750 (100.00%) were paired; of these: 2926250 (10.35%) aligned concordantly 0 times 16759590 (59.26%) aligned concordantly exactly 1 time 8596910 (30.40%) aligned concordantly >1 times ---- 2926250 pairs aligned concordantly 0 times; of these: 414041 (14.15%) aligned discordantly 1 time ---- 2512209 pairs aligned 0 times concordantly or discordantly; of these: 5024418 mates make up the pairs; of these: 4003081 (79.67%) aligned 0 times 548367 (10.91%) aligned exactly 1 time 472970 (9.41%) aligned >1 times 92.92% overall alignment rate Time searching: 00:55:05 Overall time: 00:55:05 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3817582 / 25688142 = 0.1486 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 13:04:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 13:04:57: #1 read tag files... INFO @ Sat, 11 Dec 2021 13:04:57: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 13:05:02: 1000000 INFO @ Sat, 11 Dec 2021 13:05:08: 2000000 INFO @ Sat, 11 Dec 2021 13:05:13: 3000000 INFO @ Sat, 11 Dec 2021 13:05:18: 4000000 INFO @ Sat, 11 Dec 2021 13:05:23: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 13:05:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 13:05:28: #1 read tag files... INFO @ Sat, 11 Dec 2021 13:05:28: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 13:05:28: 6000000 INFO @ Sat, 11 Dec 2021 13:05:34: 1000000 INFO @ Sat, 11 Dec 2021 13:05:35: 7000000 INFO @ Sat, 11 Dec 2021 13:05:40: 2000000 INFO @ Sat, 11 Dec 2021 13:05:41: 8000000 INFO @ Sat, 11 Dec 2021 13:05:45: 3000000 INFO @ Sat, 11 Dec 2021 13:05:47: 9000000 INFO @ Sat, 11 Dec 2021 13:05:51: 4000000 INFO @ Sat, 11 Dec 2021 13:05:53: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 13:05:57: 5000000 INFO @ Sat, 11 Dec 2021 13:05:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 13:05:57: #1 read tag files... INFO @ Sat, 11 Dec 2021 13:05:57: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 13:05:59: 11000000 INFO @ Sat, 11 Dec 2021 13:06:03: 6000000 INFO @ Sat, 11 Dec 2021 13:06:03: 1000000 INFO @ Sat, 11 Dec 2021 13:06:05: 12000000 INFO @ Sat, 11 Dec 2021 13:06:09: 7000000 INFO @ Sat, 11 Dec 2021 13:06:09: 2000000 INFO @ Sat, 11 Dec 2021 13:06:11: 13000000 INFO @ Sat, 11 Dec 2021 13:06:15: 8000000 INFO @ Sat, 11 Dec 2021 13:06:15: 3000000 INFO @ Sat, 11 Dec 2021 13:06:17: 14000000 INFO @ Sat, 11 Dec 2021 13:06:21: 9000000 INFO @ Sat, 11 Dec 2021 13:06:21: 4000000 INFO @ Sat, 11 Dec 2021 13:06:22: 15000000 INFO @ Sat, 11 Dec 2021 13:06:26: 10000000 INFO @ Sat, 11 Dec 2021 13:06:27: 5000000 INFO @ Sat, 11 Dec 2021 13:06:28: 16000000 INFO @ Sat, 11 Dec 2021 13:06:32: 11000000 INFO @ Sat, 11 Dec 2021 13:06:33: 6000000 INFO @ Sat, 11 Dec 2021 13:06:34: 17000000 INFO @ Sat, 11 Dec 2021 13:06:38: 12000000 INFO @ Sat, 11 Dec 2021 13:06:38: 7000000 INFO @ Sat, 11 Dec 2021 13:06:40: 18000000 INFO @ Sat, 11 Dec 2021 13:06:44: 8000000 INFO @ Sat, 11 Dec 2021 13:06:44: 13000000 INFO @ Sat, 11 Dec 2021 13:06:46: 19000000 INFO @ Sat, 11 Dec 2021 13:06:50: 9000000 INFO @ Sat, 11 Dec 2021 13:06:50: 14000000 INFO @ Sat, 11 Dec 2021 13:06:52: 20000000 INFO @ Sat, 11 Dec 2021 13:06:56: 10000000 INFO @ Sat, 11 Dec 2021 13:06:56: 15000000 INFO @ Sat, 11 Dec 2021 13:06:58: 21000000 INFO @ Sat, 11 Dec 2021 13:07:02: 11000000 INFO @ Sat, 11 Dec 2021 13:07:02: 16000000 INFO @ Sat, 11 Dec 2021 13:07:03: 22000000 INFO @ Sat, 11 Dec 2021 13:07:07: 12000000 INFO @ Sat, 11 Dec 2021 13:07:08: 17000000 INFO @ Sat, 11 Dec 2021 13:07:09: 23000000 INFO @ Sat, 11 Dec 2021 13:07:13: 13000000 INFO @ Sat, 11 Dec 2021 13:07:13: 18000000 INFO @ Sat, 11 Dec 2021 13:07:15: 24000000 INFO @ Sat, 11 Dec 2021 13:07:19: 14000000 INFO @ Sat, 11 Dec 2021 13:07:19: 19000000 INFO @ Sat, 11 Dec 2021 13:07:21: 25000000 INFO @ Sat, 11 Dec 2021 13:07:25: 15000000 INFO @ Sat, 11 Dec 2021 13:07:25: 20000000 INFO @ Sat, 11 Dec 2021 13:07:27: 26000000 INFO @ Sat, 11 Dec 2021 13:07:30: 16000000 INFO @ Sat, 11 Dec 2021 13:07:31: 21000000 INFO @ Sat, 11 Dec 2021 13:07:32: 27000000 INFO @ Sat, 11 Dec 2021 13:07:36: 17000000 INFO @ Sat, 11 Dec 2021 13:07:36: 22000000 INFO @ Sat, 11 Dec 2021 13:07:38: 28000000 INFO @ Sat, 11 Dec 2021 13:07:42: 18000000 INFO @ Sat, 11 Dec 2021 13:07:42: 23000000 INFO @ Sat, 11 Dec 2021 13:07:44: 29000000 INFO @ Sat, 11 Dec 2021 13:07:47: 19000000 INFO @ Sat, 11 Dec 2021 13:07:48: 24000000 INFO @ Sat, 11 Dec 2021 13:07:50: 30000000 INFO @ Sat, 11 Dec 2021 13:07:53: 20000000 INFO @ Sat, 11 Dec 2021 13:07:54: 25000000 INFO @ Sat, 11 Dec 2021 13:07:56: 31000000 INFO @ Sat, 11 Dec 2021 13:07:59: 21000000 INFO @ Sat, 11 Dec 2021 13:08:00: 26000000 INFO @ Sat, 11 Dec 2021 13:08:02: 32000000 INFO @ Sat, 11 Dec 2021 13:08:05: 22000000 INFO @ Sat, 11 Dec 2021 13:08:06: 27000000 INFO @ Sat, 11 Dec 2021 13:08:07: 33000000 INFO @ Sat, 11 Dec 2021 13:08:11: 23000000 INFO @ Sat, 11 Dec 2021 13:08:12: 28000000 INFO @ Sat, 11 Dec 2021 13:08:13: 34000000 INFO @ Sat, 11 Dec 2021 13:08:17: 24000000 INFO @ Sat, 11 Dec 2021 13:08:18: 29000000 INFO @ Sat, 11 Dec 2021 13:08:19: 35000000 INFO @ Sat, 11 Dec 2021 13:08:23: 25000000 INFO @ Sat, 11 Dec 2021 13:08:24: 30000000 INFO @ Sat, 11 Dec 2021 13:08:25: 36000000 INFO @ Sat, 11 Dec 2021 13:08:29: 26000000 INFO @ Sat, 11 Dec 2021 13:08:30: 31000000 INFO @ Sat, 11 Dec 2021 13:08:31: 37000000 INFO @ Sat, 11 Dec 2021 13:08:34: 27000000 INFO @ Sat, 11 Dec 2021 13:08:36: 32000000 INFO @ Sat, 11 Dec 2021 13:08:36: 38000000 INFO @ Sat, 11 Dec 2021 13:08:40: 28000000 INFO @ Sat, 11 Dec 2021 13:08:42: 33000000 INFO @ Sat, 11 Dec 2021 13:08:42: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 13:08:46: 29000000 INFO @ Sat, 11 Dec 2021 13:08:48: 34000000 INFO @ Sat, 11 Dec 2021 13:08:48: 40000000 INFO @ Sat, 11 Dec 2021 13:08:52: 30000000 INFO @ Sat, 11 Dec 2021 13:08:54: 35000000 INFO @ Sat, 11 Dec 2021 13:08:54: 41000000 INFO @ Sat, 11 Dec 2021 13:08:58: 31000000 INFO @ Sat, 11 Dec 2021 13:09:00: 36000000 INFO @ Sat, 11 Dec 2021 13:09:00: 42000000 INFO @ Sat, 11 Dec 2021 13:09:04: 32000000 INFO @ Sat, 11 Dec 2021 13:09:06: 37000000 INFO @ Sat, 11 Dec 2021 13:09:06: 43000000 INFO @ Sat, 11 Dec 2021 13:09:10: 33000000 INFO @ Sat, 11 Dec 2021 13:09:12: 44000000 INFO @ Sat, 11 Dec 2021 13:09:12: 38000000 INFO @ Sat, 11 Dec 2021 13:09:16: 34000000 INFO @ Sat, 11 Dec 2021 13:09:18: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 13:09:18: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 13:09:18: #1 total tags in treatment: 21562814 INFO @ Sat, 11 Dec 2021 13:09:18: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 13:09:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 13:09:18: #1 tags after filtering in treatment: 17616450 INFO @ Sat, 11 Dec 2021 13:09:18: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 11 Dec 2021 13:09:18: #1 finished! INFO @ Sat, 11 Dec 2021 13:09:18: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 13:09:18: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 13:09:18: 39000000 INFO @ Sat, 11 Dec 2021 13:09:19: #2 number of paired peaks: 106 WARNING @ Sat, 11 Dec 2021 13:09:19: Fewer paired peaks (106) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 106 pairs to build model! INFO @ Sat, 11 Dec 2021 13:09:19: start model_add_line... INFO @ Sat, 11 Dec 2021 13:09:19: start X-correlation... INFO @ Sat, 11 Dec 2021 13:09:19: end of X-cor INFO @ Sat, 11 Dec 2021 13:09:19: #2 finished! INFO @ Sat, 11 Dec 2021 13:09:19: #2 predicted fragment length is 82 bps INFO @ Sat, 11 Dec 2021 13:09:19: #2 alternative fragment length(s) may be 82 bps INFO @ Sat, 11 Dec 2021 13:09:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.05_model.r WARNING @ Sat, 11 Dec 2021 13:09:19: #2 Since the d (82) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 13:09:19: #2 You may need to consider one of the other alternative d(s): 82 WARNING @ Sat, 11 Dec 2021 13:09:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 13:09:19: #3 Call peaks... INFO @ Sat, 11 Dec 2021 13:09:19: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 13:09:22: 35000000 INFO @ Sat, 11 Dec 2021 13:09:24: 40000000 INFO @ Sat, 11 Dec 2021 13:09:28: 36000000 INFO @ Sat, 11 Dec 2021 13:09:30: 41000000 INFO @ Sat, 11 Dec 2021 13:09:34: 37000000 INFO @ Sat, 11 Dec 2021 13:09:36: 42000000 INFO @ Sat, 11 Dec 2021 13:09:40: 38000000 INFO @ Sat, 11 Dec 2021 13:09:42: 43000000 INFO @ Sat, 11 Dec 2021 13:09:46: 39000000 INFO @ Sat, 11 Dec 2021 13:09:48: 44000000 INFO @ Sat, 11 Dec 2021 13:09:51: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 13:09:52: 40000000 INFO @ Sat, 11 Dec 2021 13:09:53: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 13:09:53: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 13:09:53: #1 total tags in treatment: 21562814 INFO @ Sat, 11 Dec 2021 13:09:53: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 13:09:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 13:09:54: #1 tags after filtering in treatment: 17616450 INFO @ Sat, 11 Dec 2021 13:09:54: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 11 Dec 2021 13:09:54: #1 finished! INFO @ Sat, 11 Dec 2021 13:09:54: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 13:09:54: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 13:09:55: #2 number of paired peaks: 106 WARNING @ Sat, 11 Dec 2021 13:09:55: Fewer paired peaks (106) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 106 pairs to build model! INFO @ Sat, 11 Dec 2021 13:09:55: start model_add_line... INFO @ Sat, 11 Dec 2021 13:09:55: start X-correlation... INFO @ Sat, 11 Dec 2021 13:09:55: end of X-cor INFO @ Sat, 11 Dec 2021 13:09:55: #2 finished! INFO @ Sat, 11 Dec 2021 13:09:55: #2 predicted fragment length is 82 bps INFO @ Sat, 11 Dec 2021 13:09:55: #2 alternative fragment length(s) may be 82 bps INFO @ Sat, 11 Dec 2021 13:09:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.10_model.r WARNING @ Sat, 11 Dec 2021 13:09:55: #2 Since the d (82) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 13:09:55: #2 You may need to consider one of the other alternative d(s): 82 WARNING @ Sat, 11 Dec 2021 13:09:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 13:09:55: #3 Call peaks... INFO @ Sat, 11 Dec 2021 13:09:55: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 13:09:57: 41000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 13:10:03: 42000000 INFO @ Sat, 11 Dec 2021 13:10:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.05_peaks.xls INFO @ Sat, 11 Dec 2021 13:10:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 13:10:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.05_summits.bed INFO @ Sat, 11 Dec 2021 13:10:07: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2297 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 13:10:08: 43000000 INFO @ Sat, 11 Dec 2021 13:10:14: 44000000 INFO @ Sat, 11 Dec 2021 13:10:19: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 13:10:19: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 13:10:19: #1 total tags in treatment: 21562814 INFO @ Sat, 11 Dec 2021 13:10:19: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 13:10:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 13:10:19: #1 tags after filtering in treatment: 17616450 INFO @ Sat, 11 Dec 2021 13:10:19: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 11 Dec 2021 13:10:19: #1 finished! INFO @ Sat, 11 Dec 2021 13:10:19: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 13:10:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 13:10:20: #2 number of paired peaks: 106 WARNING @ Sat, 11 Dec 2021 13:10:20: Fewer paired peaks (106) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 106 pairs to build model! INFO @ Sat, 11 Dec 2021 13:10:20: start model_add_line... INFO @ Sat, 11 Dec 2021 13:10:20: start X-correlation... INFO @ Sat, 11 Dec 2021 13:10:20: end of X-cor INFO @ Sat, 11 Dec 2021 13:10:20: #2 finished! INFO @ Sat, 11 Dec 2021 13:10:20: #2 predicted fragment length is 82 bps INFO @ Sat, 11 Dec 2021 13:10:20: #2 alternative fragment length(s) may be 82 bps INFO @ Sat, 11 Dec 2021 13:10:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.20_model.r WARNING @ Sat, 11 Dec 2021 13:10:20: #2 Since the d (82) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 13:10:20: #2 You may need to consider one of the other alternative d(s): 82 WARNING @ Sat, 11 Dec 2021 13:10:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 13:10:20: #3 Call peaks... INFO @ Sat, 11 Dec 2021 13:10:20: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 13:10:26: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 13:10:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.10_peaks.xls INFO @ Sat, 11 Dec 2021 13:10:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 13:10:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.10_summits.bed INFO @ Sat, 11 Dec 2021 13:10:41: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1292 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 13:10:52: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 13:11:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.20_peaks.xls INFO @ Sat, 11 Dec 2021 13:11:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 13:11:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10386204/SRX10386204.20_summits.bed INFO @ Sat, 11 Dec 2021 13:11:08: Done! pass1 - making usageList (8 chroms): 1 millis pass2 - checking and writing primary data (763 records, 4 fields): 2 millis CompletedMACS2peakCalling