Job ID = 14172029 SRX = SRX10089742 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 34994285 spots for SRR13700629/SRR13700629.sra Written 34994285 spots for SRR13700629/SRR13700629.sra fastq に変換しました。 bowtie でマッピング中... Your job 14172558 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:30:03 34994285 reads; of these: 34994285 (100.00%) were paired; of these: 1974082 (5.64%) aligned concordantly 0 times 29199761 (83.44%) aligned concordantly exactly 1 time 3820442 (10.92%) aligned concordantly >1 times ---- 1974082 pairs aligned concordantly 0 times; of these: 474880 (24.06%) aligned discordantly 1 time ---- 1499202 pairs aligned 0 times concordantly or discordantly; of these: 2998404 mates make up the pairs; of these: 2077943 (69.30%) aligned 0 times 677700 (22.60%) aligned exactly 1 time 242761 (8.10%) aligned >1 times 97.03% overall alignment rate Time searching: 00:30:03 Overall time: 00:30:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4005394 / 33111939 = 0.1210 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 14:35:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 14:35:49: #1 read tag files... INFO @ Sat, 11 Dec 2021 14:35:49: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 14:35:54: 1000000 INFO @ Sat, 11 Dec 2021 14:35:59: 2000000 INFO @ Sat, 11 Dec 2021 14:36:03: 3000000 INFO @ Sat, 11 Dec 2021 14:36:08: 4000000 INFO @ Sat, 11 Dec 2021 14:36:13: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 14:36:18: 6000000 INFO @ Sat, 11 Dec 2021 14:36:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 14:36:19: #1 read tag files... INFO @ Sat, 11 Dec 2021 14:36:19: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 14:36:23: 7000000 INFO @ Sat, 11 Dec 2021 14:36:26: 1000000 INFO @ Sat, 11 Dec 2021 14:36:29: 8000000 INFO @ Sat, 11 Dec 2021 14:36:32: 2000000 INFO @ Sat, 11 Dec 2021 14:36:35: 9000000 INFO @ Sat, 11 Dec 2021 14:36:39: 3000000 INFO @ Sat, 11 Dec 2021 14:36:41: 10000000 INFO @ Sat, 11 Dec 2021 14:36:45: 4000000 INFO @ Sat, 11 Dec 2021 14:36:47: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 14:36:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 14:36:49: #1 read tag files... INFO @ Sat, 11 Dec 2021 14:36:49: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 14:36:52: 5000000 INFO @ Sat, 11 Dec 2021 14:36:53: 12000000 INFO @ Sat, 11 Dec 2021 14:36:56: 1000000 INFO @ Sat, 11 Dec 2021 14:36:59: 13000000 INFO @ Sat, 11 Dec 2021 14:36:59: 6000000 INFO @ Sat, 11 Dec 2021 14:37:03: 2000000 INFO @ Sat, 11 Dec 2021 14:37:05: 14000000 INFO @ Sat, 11 Dec 2021 14:37:06: 7000000 INFO @ Sat, 11 Dec 2021 14:37:09: 3000000 INFO @ Sat, 11 Dec 2021 14:37:11: 15000000 INFO @ Sat, 11 Dec 2021 14:37:13: 8000000 INFO @ Sat, 11 Dec 2021 14:37:16: 4000000 INFO @ Sat, 11 Dec 2021 14:37:17: 16000000 INFO @ Sat, 11 Dec 2021 14:37:19: 9000000 INFO @ Sat, 11 Dec 2021 14:37:23: 17000000 INFO @ Sat, 11 Dec 2021 14:37:23: 5000000 INFO @ Sat, 11 Dec 2021 14:37:26: 10000000 INFO @ Sat, 11 Dec 2021 14:37:29: 18000000 INFO @ Sat, 11 Dec 2021 14:37:29: 6000000 INFO @ Sat, 11 Dec 2021 14:37:33: 11000000 INFO @ Sat, 11 Dec 2021 14:37:35: 19000000 INFO @ Sat, 11 Dec 2021 14:37:36: 7000000 INFO @ Sat, 11 Dec 2021 14:37:40: 12000000 INFO @ Sat, 11 Dec 2021 14:37:41: 20000000 INFO @ Sat, 11 Dec 2021 14:37:43: 8000000 INFO @ Sat, 11 Dec 2021 14:37:47: 13000000 INFO @ Sat, 11 Dec 2021 14:37:47: 21000000 INFO @ Sat, 11 Dec 2021 14:37:49: 9000000 INFO @ Sat, 11 Dec 2021 14:37:53: 22000000 INFO @ Sat, 11 Dec 2021 14:37:53: 14000000 INFO @ Sat, 11 Dec 2021 14:37:55: 10000000 INFO @ Sat, 11 Dec 2021 14:37:59: 23000000 INFO @ Sat, 11 Dec 2021 14:38:00: 15000000 INFO @ Sat, 11 Dec 2021 14:38:02: 11000000 INFO @ Sat, 11 Dec 2021 14:38:05: 24000000 INFO @ Sat, 11 Dec 2021 14:38:07: 16000000 INFO @ Sat, 11 Dec 2021 14:38:09: 12000000 INFO @ Sat, 11 Dec 2021 14:38:11: 25000000 INFO @ Sat, 11 Dec 2021 14:38:14: 17000000 INFO @ Sat, 11 Dec 2021 14:38:16: 13000000 INFO @ Sat, 11 Dec 2021 14:38:17: 26000000 INFO @ Sat, 11 Dec 2021 14:38:20: 18000000 INFO @ Sat, 11 Dec 2021 14:38:22: 14000000 INFO @ Sat, 11 Dec 2021 14:38:23: 27000000 INFO @ Sat, 11 Dec 2021 14:38:27: 19000000 INFO @ Sat, 11 Dec 2021 14:38:29: 28000000 INFO @ Sat, 11 Dec 2021 14:38:29: 15000000 INFO @ Sat, 11 Dec 2021 14:38:34: 20000000 INFO @ Sat, 11 Dec 2021 14:38:35: 29000000 INFO @ Sat, 11 Dec 2021 14:38:36: 16000000 INFO @ Sat, 11 Dec 2021 14:38:41: 30000000 INFO @ Sat, 11 Dec 2021 14:38:41: 21000000 INFO @ Sat, 11 Dec 2021 14:38:42: 17000000 INFO @ Sat, 11 Dec 2021 14:38:47: 31000000 INFO @ Sat, 11 Dec 2021 14:38:48: 22000000 INFO @ Sat, 11 Dec 2021 14:38:48: 18000000 INFO @ Sat, 11 Dec 2021 14:38:53: 32000000 INFO @ Sat, 11 Dec 2021 14:38:54: 19000000 INFO @ Sat, 11 Dec 2021 14:38:55: 23000000 INFO @ Sat, 11 Dec 2021 14:38:59: 33000000 INFO @ Sat, 11 Dec 2021 14:39:01: 20000000 INFO @ Sat, 11 Dec 2021 14:39:01: 24000000 INFO @ Sat, 11 Dec 2021 14:39:05: 34000000 INFO @ Sat, 11 Dec 2021 14:39:07: 21000000 INFO @ Sat, 11 Dec 2021 14:39:08: 25000000 INFO @ Sat, 11 Dec 2021 14:39:11: 35000000 INFO @ Sat, 11 Dec 2021 14:39:13: 22000000 INFO @ Sat, 11 Dec 2021 14:39:15: 26000000 INFO @ Sat, 11 Dec 2021 14:39:17: 36000000 INFO @ Sat, 11 Dec 2021 14:39:19: 23000000 INFO @ Sat, 11 Dec 2021 14:39:21: 27000000 INFO @ Sat, 11 Dec 2021 14:39:23: 37000000 INFO @ Sat, 11 Dec 2021 14:39:26: 24000000 INFO @ Sat, 11 Dec 2021 14:39:28: 28000000 INFO @ Sat, 11 Dec 2021 14:39:29: 38000000 INFO @ Sat, 11 Dec 2021 14:39:32: 25000000 INFO @ Sat, 11 Dec 2021 14:39:35: 29000000 INFO @ Sat, 11 Dec 2021 14:39:35: 39000000 INFO @ Sat, 11 Dec 2021 14:39:38: 26000000 INFO @ Sat, 11 Dec 2021 14:39:41: 40000000 INFO @ Sat, 11 Dec 2021 14:39:42: 30000000 INFO @ Sat, 11 Dec 2021 14:39:45: 27000000 INFO @ Sat, 11 Dec 2021 14:39:48: 41000000 INFO @ Sat, 11 Dec 2021 14:39:49: 31000000 INFO @ Sat, 11 Dec 2021 14:39:51: 28000000 INFO @ Sat, 11 Dec 2021 14:39:54: 42000000 INFO @ Sat, 11 Dec 2021 14:39:55: 32000000 INFO @ Sat, 11 Dec 2021 14:39:57: 29000000 INFO @ Sat, 11 Dec 2021 14:40:00: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 14:40:02: 33000000 INFO @ Sat, 11 Dec 2021 14:40:03: 30000000 INFO @ Sat, 11 Dec 2021 14:40:06: 44000000 INFO @ Sat, 11 Dec 2021 14:40:09: 34000000 INFO @ Sat, 11 Dec 2021 14:40:09: 31000000 INFO @ Sat, 11 Dec 2021 14:40:12: 45000000 INFO @ Sat, 11 Dec 2021 14:40:16: 32000000 INFO @ Sat, 11 Dec 2021 14:40:16: 35000000 INFO @ Sat, 11 Dec 2021 14:40:18: 46000000 INFO @ Sat, 11 Dec 2021 14:40:22: 33000000 INFO @ Sat, 11 Dec 2021 14:40:23: 36000000 INFO @ Sat, 11 Dec 2021 14:40:24: 47000000 INFO @ Sat, 11 Dec 2021 14:40:28: 34000000 INFO @ Sat, 11 Dec 2021 14:40:29: 37000000 INFO @ Sat, 11 Dec 2021 14:40:30: 48000000 INFO @ Sat, 11 Dec 2021 14:40:34: 35000000 INFO @ Sat, 11 Dec 2021 14:40:36: 38000000 INFO @ Sat, 11 Dec 2021 14:40:36: 49000000 INFO @ Sat, 11 Dec 2021 14:40:41: 36000000 INFO @ Sat, 11 Dec 2021 14:40:42: 50000000 INFO @ Sat, 11 Dec 2021 14:40:43: 39000000 INFO @ Sat, 11 Dec 2021 14:40:47: 37000000 INFO @ Sat, 11 Dec 2021 14:40:48: 51000000 INFO @ Sat, 11 Dec 2021 14:40:50: 40000000 INFO @ Sat, 11 Dec 2021 14:40:54: 38000000 INFO @ Sat, 11 Dec 2021 14:40:54: 52000000 INFO @ Sat, 11 Dec 2021 14:40:56: 41000000 INFO @ Sat, 11 Dec 2021 14:41:00: 53000000 INFO @ Sat, 11 Dec 2021 14:41:01: 39000000 INFO @ Sat, 11 Dec 2021 14:41:03: 42000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 14:41:06: 54000000 INFO @ Sat, 11 Dec 2021 14:41:07: 40000000 INFO @ Sat, 11 Dec 2021 14:41:09: 43000000 INFO @ Sat, 11 Dec 2021 14:41:12: 55000000 INFO @ Sat, 11 Dec 2021 14:41:14: 41000000 INFO @ Sat, 11 Dec 2021 14:41:16: 44000000 INFO @ Sat, 11 Dec 2021 14:41:18: 56000000 INFO @ Sat, 11 Dec 2021 14:41:21: 42000000 INFO @ Sat, 11 Dec 2021 14:41:23: 45000000 INFO @ Sat, 11 Dec 2021 14:41:23: 57000000 INFO @ Sat, 11 Dec 2021 14:41:27: 43000000 INFO @ Sat, 11 Dec 2021 14:41:29: 58000000 INFO @ Sat, 11 Dec 2021 14:41:29: 46000000 INFO @ Sat, 11 Dec 2021 14:41:34: 44000000 INFO @ Sat, 11 Dec 2021 14:41:35: 59000000 INFO @ Sat, 11 Dec 2021 14:41:36: 47000000 INFO @ Sat, 11 Dec 2021 14:41:40: 45000000 INFO @ Sat, 11 Dec 2021 14:41:41: #1 tag size is determined as 40 bps INFO @ Sat, 11 Dec 2021 14:41:41: #1 tag size = 40 INFO @ Sat, 11 Dec 2021 14:41:41: #1 total tags in treatment: 29025569 INFO @ Sat, 11 Dec 2021 14:41:41: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:41:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:41:41: #1 tags after filtering in treatment: 17498264 INFO @ Sat, 11 Dec 2021 14:41:41: #1 Redundant rate of treatment: 0.40 INFO @ Sat, 11 Dec 2021 14:41:41: #1 finished! INFO @ Sat, 11 Dec 2021 14:41:41: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:41:41: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:41:43: #2 number of paired peaks: 1380 INFO @ Sat, 11 Dec 2021 14:41:43: start model_add_line... INFO @ Sat, 11 Dec 2021 14:41:43: start X-correlation... INFO @ Sat, 11 Dec 2021 14:41:43: end of X-cor INFO @ Sat, 11 Dec 2021 14:41:43: #2 finished! INFO @ Sat, 11 Dec 2021 14:41:43: #2 predicted fragment length is 92 bps INFO @ Sat, 11 Dec 2021 14:41:43: #2 alternative fragment length(s) may be 92 bps INFO @ Sat, 11 Dec 2021 14:41:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.05_model.r INFO @ Sat, 11 Dec 2021 14:41:43: 48000000 INFO @ Sat, 11 Dec 2021 14:41:43: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:41:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:41:46: 46000000 INFO @ Sat, 11 Dec 2021 14:41:50: 49000000 INFO @ Sat, 11 Dec 2021 14:41:52: 47000000 INFO @ Sat, 11 Dec 2021 14:41:57: 50000000 INFO @ Sat, 11 Dec 2021 14:41:59: 48000000 INFO @ Sat, 11 Dec 2021 14:42:03: 51000000 INFO @ Sat, 11 Dec 2021 14:42:05: 49000000 INFO @ Sat, 11 Dec 2021 14:42:09: 52000000 INFO @ Sat, 11 Dec 2021 14:42:11: 50000000 INFO @ Sat, 11 Dec 2021 14:42:16: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:42:16: 53000000 INFO @ Sat, 11 Dec 2021 14:42:18: 51000000 INFO @ Sat, 11 Dec 2021 14:42:22: 54000000 INFO @ Sat, 11 Dec 2021 14:42:24: 52000000 INFO @ Sat, 11 Dec 2021 14:42:29: 55000000 INFO @ Sat, 11 Dec 2021 14:42:30: 53000000 INFO @ Sat, 11 Dec 2021 14:42:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.05_peaks.xls INFO @ Sat, 11 Dec 2021 14:42:35: 56000000 INFO @ Sat, 11 Dec 2021 14:42:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:42:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.05_summits.bed INFO @ Sat, 11 Dec 2021 14:42:35: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (18102 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 14:42:36: 54000000 INFO @ Sat, 11 Dec 2021 14:42:42: 57000000 INFO @ Sat, 11 Dec 2021 14:42:42: 55000000 INFO @ Sat, 11 Dec 2021 14:42:48: 58000000 INFO @ Sat, 11 Dec 2021 14:42:49: 56000000 INFO @ Sat, 11 Dec 2021 14:42:55: 59000000 INFO @ Sat, 11 Dec 2021 14:42:55: 57000000 INFO @ Sat, 11 Dec 2021 14:43:01: #1 tag size is determined as 40 bps INFO @ Sat, 11 Dec 2021 14:43:01: #1 tag size = 40 INFO @ Sat, 11 Dec 2021 14:43:01: #1 total tags in treatment: 29025569 INFO @ Sat, 11 Dec 2021 14:43:01: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:43:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:43:01: 58000000 INFO @ Sat, 11 Dec 2021 14:43:01: #1 tags after filtering in treatment: 17498264 INFO @ Sat, 11 Dec 2021 14:43:01: #1 Redundant rate of treatment: 0.40 INFO @ Sat, 11 Dec 2021 14:43:01: #1 finished! INFO @ Sat, 11 Dec 2021 14:43:01: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:43:01: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:43:03: #2 number of paired peaks: 1380 INFO @ Sat, 11 Dec 2021 14:43:03: start model_add_line... INFO @ Sat, 11 Dec 2021 14:43:03: start X-correlation... INFO @ Sat, 11 Dec 2021 14:43:03: end of X-cor INFO @ Sat, 11 Dec 2021 14:43:03: #2 finished! INFO @ Sat, 11 Dec 2021 14:43:03: #2 predicted fragment length is 92 bps INFO @ Sat, 11 Dec 2021 14:43:03: #2 alternative fragment length(s) may be 92 bps INFO @ Sat, 11 Dec 2021 14:43:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.10_model.r INFO @ Sat, 11 Dec 2021 14:43:03: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:43:03: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:43:07: 59000000 INFO @ Sat, 11 Dec 2021 14:43:12: #1 tag size is determined as 40 bps INFO @ Sat, 11 Dec 2021 14:43:12: #1 tag size = 40 INFO @ Sat, 11 Dec 2021 14:43:12: #1 total tags in treatment: 29025569 INFO @ Sat, 11 Dec 2021 14:43:12: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:43:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:43:12: #1 tags after filtering in treatment: 17498264 INFO @ Sat, 11 Dec 2021 14:43:12: #1 Redundant rate of treatment: 0.40 INFO @ Sat, 11 Dec 2021 14:43:12: #1 finished! INFO @ Sat, 11 Dec 2021 14:43:12: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:43:12: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:43:14: #2 number of paired peaks: 1380 INFO @ Sat, 11 Dec 2021 14:43:14: start model_add_line... INFO @ Sat, 11 Dec 2021 14:43:14: start X-correlation... INFO @ Sat, 11 Dec 2021 14:43:14: end of X-cor INFO @ Sat, 11 Dec 2021 14:43:14: #2 finished! INFO @ Sat, 11 Dec 2021 14:43:14: #2 predicted fragment length is 92 bps INFO @ Sat, 11 Dec 2021 14:43:14: #2 alternative fragment length(s) may be 92 bps INFO @ Sat, 11 Dec 2021 14:43:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.20_model.r INFO @ Sat, 11 Dec 2021 14:43:14: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:43:14: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:43:36: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:43:48: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:43:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.10_peaks.xls INFO @ Sat, 11 Dec 2021 14:43:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:43:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.10_summits.bed INFO @ Sat, 11 Dec 2021 14:43:54: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (11384 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 14:44:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.20_peaks.xls INFO @ Sat, 11 Dec 2021 14:44:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:44:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10089742/SRX10089742.20_summits.bed INFO @ Sat, 11 Dec 2021 14:44:06: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (4441 records, 4 fields): 5 millis CompletedMACS2peakCalling