Job ID = 16439823 SRX = ERX5970268 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T07:15:39 prefetch.2.10.7: 1) Downloading 'ERR6338591'... 2022-08-02T07:15:39 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T07:19:08 prefetch.2.10.7: HTTPS download succeed 2022-08-02T07:19:08 prefetch.2.10.7: 1) 'ERR6338591' was downloaded successfully 2022-08-02T07:19:08 prefetch.2.10.7: 'ERR6338591' has 0 unresolved dependencies Read 27530837 spots for ERR6338591/ERR6338591.sra Written 27530837 spots for ERR6338591/ERR6338591.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440729 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:13:47 27530837 reads; of these: 27530837 (100.00%) were paired; of these: 3263369 (11.85%) aligned concordantly 0 times 22933818 (83.30%) aligned concordantly exactly 1 time 1333650 (4.84%) aligned concordantly >1 times ---- 3263369 pairs aligned concordantly 0 times; of these: 2071429 (63.48%) aligned discordantly 1 time ---- 1191940 pairs aligned 0 times concordantly or discordantly; of these: 2383880 mates make up the pairs; of these: 1439083 (60.37%) aligned 0 times 650905 (27.30%) aligned exactly 1 time 293892 (12.33%) aligned >1 times 97.39% overall alignment rate Time searching: 01:13:47 Overall time: 01:13:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1418297 / 21581836 = 0.0657 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:20:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:20:16: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:20:16: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:20:35: 1000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:20:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:20:44: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:20:44: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:20:54: 2000000 INFO @ Tue, 02 Aug 2022 18:21:00: 1000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:21:12: 3000000 INFO @ Tue, 02 Aug 2022 18:21:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:21:14: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:21:14: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:21:16: 2000000 INFO @ Tue, 02 Aug 2022 18:21:30: 4000000 INFO @ Tue, 02 Aug 2022 18:21:32: 1000000 INFO @ Tue, 02 Aug 2022 18:21:33: 3000000 INFO @ Tue, 02 Aug 2022 18:21:48: 4000000 INFO @ Tue, 02 Aug 2022 18:21:49: 2000000 INFO @ Tue, 02 Aug 2022 18:21:49: 5000000 INFO @ Tue, 02 Aug 2022 18:22:05: 5000000 INFO @ Tue, 02 Aug 2022 18:22:05: 3000000 INFO @ Tue, 02 Aug 2022 18:22:09: 6000000 INFO @ Tue, 02 Aug 2022 18:22:20: 6000000 INFO @ Tue, 02 Aug 2022 18:22:22: 4000000 INFO @ Tue, 02 Aug 2022 18:22:27: 7000000 INFO @ Tue, 02 Aug 2022 18:22:37: 7000000 INFO @ Tue, 02 Aug 2022 18:22:37: 5000000 INFO @ Tue, 02 Aug 2022 18:22:47: 8000000 INFO @ Tue, 02 Aug 2022 18:22:51: 6000000 INFO @ Tue, 02 Aug 2022 18:22:52: 8000000 INFO @ Tue, 02 Aug 2022 18:23:06: 9000000 INFO @ Tue, 02 Aug 2022 18:23:06: 7000000 INFO @ Tue, 02 Aug 2022 18:23:08: 9000000 INFO @ Tue, 02 Aug 2022 18:23:22: 8000000 INFO @ Tue, 02 Aug 2022 18:23:24: 10000000 INFO @ Tue, 02 Aug 2022 18:23:25: 10000000 INFO @ Tue, 02 Aug 2022 18:23:36: 9000000 INFO @ Tue, 02 Aug 2022 18:23:39: 11000000 INFO @ Tue, 02 Aug 2022 18:23:45: 11000000 INFO @ Tue, 02 Aug 2022 18:23:51: 10000000 INFO @ Tue, 02 Aug 2022 18:23:54: 12000000 INFO @ Tue, 02 Aug 2022 18:24:03: 12000000 INFO @ Tue, 02 Aug 2022 18:24:05: 11000000 INFO @ Tue, 02 Aug 2022 18:24:10: 13000000 INFO @ Tue, 02 Aug 2022 18:24:19: 12000000 INFO @ Tue, 02 Aug 2022 18:24:23: 13000000 INFO @ Tue, 02 Aug 2022 18:24:26: 14000000 INFO @ Tue, 02 Aug 2022 18:24:34: 13000000 INFO @ Tue, 02 Aug 2022 18:24:41: 15000000 INFO @ Tue, 02 Aug 2022 18:24:41: 14000000 INFO @ Tue, 02 Aug 2022 18:24:49: 14000000 INFO @ Tue, 02 Aug 2022 18:24:55: 16000000 INFO @ Tue, 02 Aug 2022 18:25:00: 15000000 INFO @ Tue, 02 Aug 2022 18:25:04: 15000000 INFO @ Tue, 02 Aug 2022 18:25:11: 17000000 INFO @ Tue, 02 Aug 2022 18:25:18: 16000000 INFO @ Tue, 02 Aug 2022 18:25:18: 16000000 INFO @ Tue, 02 Aug 2022 18:25:26: 18000000 INFO @ Tue, 02 Aug 2022 18:25:32: 17000000 INFO @ Tue, 02 Aug 2022 18:25:36: 17000000 INFO @ Tue, 02 Aug 2022 18:25:42: 19000000 INFO @ Tue, 02 Aug 2022 18:25:48: 18000000 INFO @ Tue, 02 Aug 2022 18:25:55: 18000000 INFO @ Tue, 02 Aug 2022 18:25:57: 20000000 INFO @ Tue, 02 Aug 2022 18:26:04: 19000000 INFO @ Tue, 02 Aug 2022 18:26:11: 19000000 INFO @ Tue, 02 Aug 2022 18:26:11: 21000000 INFO @ Tue, 02 Aug 2022 18:26:18: 20000000 INFO @ Tue, 02 Aug 2022 18:26:27: 22000000 INFO @ Tue, 02 Aug 2022 18:26:29: 20000000 INFO @ Tue, 02 Aug 2022 18:26:33: 21000000 INFO @ Tue, 02 Aug 2022 18:26:42: 23000000 INFO @ Tue, 02 Aug 2022 18:26:47: 21000000 INFO @ Tue, 02 Aug 2022 18:26:47: 22000000 INFO @ Tue, 02 Aug 2022 18:26:57: 24000000 INFO @ Tue, 02 Aug 2022 18:27:02: 23000000 INFO @ Tue, 02 Aug 2022 18:27:05: 22000000 INFO @ Tue, 02 Aug 2022 18:27:12: 25000000 INFO @ Tue, 02 Aug 2022 18:27:16: 24000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:27:23: 23000000 INFO @ Tue, 02 Aug 2022 18:27:27: 26000000 INFO @ Tue, 02 Aug 2022 18:27:30: 25000000 INFO @ Tue, 02 Aug 2022 18:27:41: 24000000 INFO @ Tue, 02 Aug 2022 18:27:42: 27000000 INFO @ Tue, 02 Aug 2022 18:27:45: 26000000 INFO @ Tue, 02 Aug 2022 18:27:57: 28000000 INFO @ Tue, 02 Aug 2022 18:28:00: 25000000 INFO @ Tue, 02 Aug 2022 18:28:00: 27000000 INFO @ Tue, 02 Aug 2022 18:28:12: 29000000 INFO @ Tue, 02 Aug 2022 18:28:15: 28000000 INFO @ Tue, 02 Aug 2022 18:28:18: 26000000 INFO @ Tue, 02 Aug 2022 18:28:27: 30000000 INFO @ Tue, 02 Aug 2022 18:28:29: 29000000 INFO @ Tue, 02 Aug 2022 18:28:36: 27000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:28:41: 31000000 INFO @ Tue, 02 Aug 2022 18:28:44: 30000000 INFO @ Tue, 02 Aug 2022 18:28:55: 28000000 INFO @ Tue, 02 Aug 2022 18:28:55: 32000000 INFO @ Tue, 02 Aug 2022 18:28:58: 31000000 INFO @ Tue, 02 Aug 2022 18:29:10: 33000000 INFO @ Tue, 02 Aug 2022 18:29:12: 32000000 INFO @ Tue, 02 Aug 2022 18:29:13: 29000000 INFO @ Tue, 02 Aug 2022 18:29:25: 34000000 INFO @ Tue, 02 Aug 2022 18:29:29: 33000000 INFO @ Tue, 02 Aug 2022 18:29:31: 30000000 INFO @ Tue, 02 Aug 2022 18:29:40: 35000000 INFO @ Tue, 02 Aug 2022 18:29:44: 34000000 INFO @ Tue, 02 Aug 2022 18:29:48: 31000000 INFO @ Tue, 02 Aug 2022 18:29:55: 36000000 INFO @ Tue, 02 Aug 2022 18:29:59: 35000000 INFO @ Tue, 02 Aug 2022 18:30:06: 32000000 INFO @ Tue, 02 Aug 2022 18:30:10: 37000000 INFO @ Tue, 02 Aug 2022 18:30:13: 36000000 INFO @ Tue, 02 Aug 2022 18:30:24: 33000000 INFO @ Tue, 02 Aug 2022 18:30:26: 37000000 INFO @ Tue, 02 Aug 2022 18:30:26: 38000000 INFO @ Tue, 02 Aug 2022 18:30:40: 38000000 INFO @ Tue, 02 Aug 2022 18:30:40: 39000000 INFO @ Tue, 02 Aug 2022 18:30:42: 34000000 INFO @ Tue, 02 Aug 2022 18:30:54: 39000000 INFO @ Tue, 02 Aug 2022 18:30:55: 40000000 INFO @ Tue, 02 Aug 2022 18:30:59: 35000000 INFO @ Tue, 02 Aug 2022 18:31:08: 40000000 INFO @ Tue, 02 Aug 2022 18:31:09: 41000000 INFO @ Tue, 02 Aug 2022 18:31:17: 36000000 INFO @ Tue, 02 Aug 2022 18:31:21: 41000000 INFO @ Tue, 02 Aug 2022 18:31:24: 42000000 INFO @ Tue, 02 Aug 2022 18:31:34: 37000000 INFO @ Tue, 02 Aug 2022 18:31:35: 42000000 INFO @ Tue, 02 Aug 2022 18:31:38: 43000000 INFO @ Tue, 02 Aug 2022 18:31:49: 43000000 INFO @ Tue, 02 Aug 2022 18:31:51: 38000000 INFO @ Tue, 02 Aug 2022 18:31:52: 44000000 INFO @ Tue, 02 Aug 2022 18:32:02: 44000000 INFO @ Tue, 02 Aug 2022 18:32:07: 45000000 INFO @ Tue, 02 Aug 2022 18:32:09: 39000000 INFO @ Tue, 02 Aug 2022 18:32:16: 45000000 INFO @ Tue, 02 Aug 2022 18:32:23: 46000000 INFO @ Tue, 02 Aug 2022 18:32:27: 40000000 INFO @ Tue, 02 Aug 2022 18:32:30: 46000000 INFO @ Tue, 02 Aug 2022 18:32:37: 47000000 INFO @ Tue, 02 Aug 2022 18:32:44: 47000000 INFO @ Tue, 02 Aug 2022 18:32:44: 41000000 INFO @ Tue, 02 Aug 2022 18:32:51: 48000000 INFO @ Tue, 02 Aug 2022 18:32:58: 48000000 INFO @ Tue, 02 Aug 2022 18:33:02: 42000000 INFO @ Tue, 02 Aug 2022 18:33:06: 49000000 INFO @ Tue, 02 Aug 2022 18:33:13: 49000000 INFO @ Tue, 02 Aug 2022 18:33:20: 43000000 INFO @ Tue, 02 Aug 2022 18:33:22: 50000000 INFO @ Tue, 02 Aug 2022 18:33:27: 50000000 INFO @ Tue, 02 Aug 2022 18:33:33: #1 tag size is determined as 142 bps INFO @ Tue, 02 Aug 2022 18:33:33: #1 tag size = 142 INFO @ Tue, 02 Aug 2022 18:33:33: #1 total tags in treatment: 22970699 INFO @ Tue, 02 Aug 2022 18:33:33: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:33:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:33:34: #1 tags after filtering in treatment: 16695073 INFO @ Tue, 02 Aug 2022 18:33:34: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 18:33:34: #1 finished! INFO @ Tue, 02 Aug 2022 18:33:34: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:33:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:33:37: #2 number of paired peaks: 10421 INFO @ Tue, 02 Aug 2022 18:33:37: start model_add_line... INFO @ Tue, 02 Aug 2022 18:33:37: 44000000 INFO @ Tue, 02 Aug 2022 18:33:37: start X-correlation... INFO @ Tue, 02 Aug 2022 18:33:37: end of X-cor INFO @ Tue, 02 Aug 2022 18:33:37: #2 finished! INFO @ Tue, 02 Aug 2022 18:33:37: #2 predicted fragment length is 195 bps INFO @ Tue, 02 Aug 2022 18:33:37: #2 alternative fragment length(s) may be 195 bps INFO @ Tue, 02 Aug 2022 18:33:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.10_model.r WARNING @ Tue, 02 Aug 2022 18:33:37: #2 Since the d (195) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:33:37: #2 You may need to consider one of the other alternative d(s): 195 WARNING @ Tue, 02 Aug 2022 18:33:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:33:37: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:33:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:33:39: #1 tag size is determined as 142 bps INFO @ Tue, 02 Aug 2022 18:33:39: #1 tag size = 142 INFO @ Tue, 02 Aug 2022 18:33:39: #1 total tags in treatment: 22970699 INFO @ Tue, 02 Aug 2022 18:33:39: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:33:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:33:39: #1 tags after filtering in treatment: 16695073 INFO @ Tue, 02 Aug 2022 18:33:39: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 18:33:39: #1 finished! INFO @ Tue, 02 Aug 2022 18:33:39: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:33:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:33:42: #2 number of paired peaks: 10421 INFO @ Tue, 02 Aug 2022 18:33:42: start model_add_line... INFO @ Tue, 02 Aug 2022 18:33:43: start X-correlation... INFO @ Tue, 02 Aug 2022 18:33:43: end of X-cor INFO @ Tue, 02 Aug 2022 18:33:43: #2 finished! INFO @ Tue, 02 Aug 2022 18:33:43: #2 predicted fragment length is 195 bps INFO @ Tue, 02 Aug 2022 18:33:43: #2 alternative fragment length(s) may be 195 bps INFO @ Tue, 02 Aug 2022 18:33:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.20_model.r WARNING @ Tue, 02 Aug 2022 18:33:43: #2 Since the d (195) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:33:43: #2 You may need to consider one of the other alternative d(s): 195 WARNING @ Tue, 02 Aug 2022 18:33:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:33:43: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:33:43: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:33:53: 45000000 INFO @ Tue, 02 Aug 2022 18:34:10: 46000000 INFO @ Tue, 02 Aug 2022 18:34:26: 47000000 INFO @ Tue, 02 Aug 2022 18:34:42: 48000000 INFO @ Tue, 02 Aug 2022 18:34:49: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:34:54: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:34:59: 49000000 INFO @ Tue, 02 Aug 2022 18:35:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:35:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:35:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.10_summits.bed INFO @ Tue, 02 Aug 2022 18:35:15: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (9296 records, 4 fields): 47 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:35:16: 50000000 INFO @ Tue, 02 Aug 2022 18:35:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:35:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:35:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.20_summits.bed INFO @ Tue, 02 Aug 2022 18:35:18: Done! pass1 - making usageList (13 chroms): 5 millis pass2 - checking and writing primary data (7335 records, 4 fields): 49 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:35:29: #1 tag size is determined as 142 bps INFO @ Tue, 02 Aug 2022 18:35:29: #1 tag size = 142 INFO @ Tue, 02 Aug 2022 18:35:29: #1 total tags in treatment: 22970699 INFO @ Tue, 02 Aug 2022 18:35:29: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:35:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:35:30: #1 tags after filtering in treatment: 16695073 INFO @ Tue, 02 Aug 2022 18:35:30: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 18:35:30: #1 finished! INFO @ Tue, 02 Aug 2022 18:35:30: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:35:30: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:35:33: #2 number of paired peaks: 10421 INFO @ Tue, 02 Aug 2022 18:35:33: start model_add_line... INFO @ Tue, 02 Aug 2022 18:35:33: start X-correlation... INFO @ Tue, 02 Aug 2022 18:35:33: end of X-cor INFO @ Tue, 02 Aug 2022 18:35:33: #2 finished! INFO @ Tue, 02 Aug 2022 18:35:33: #2 predicted fragment length is 195 bps INFO @ Tue, 02 Aug 2022 18:35:33: #2 alternative fragment length(s) may be 195 bps INFO @ Tue, 02 Aug 2022 18:35:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.05_model.r WARNING @ Tue, 02 Aug 2022 18:35:33: #2 Since the d (195) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:35:33: #2 You may need to consider one of the other alternative d(s): 195 WARNING @ Tue, 02 Aug 2022 18:35:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:35:33: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:35:33: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:36:39: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:37:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:37:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:37:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5970268/ERX5970268.05_summits.bed INFO @ Tue, 02 Aug 2022 18:37:02: Done! pass1 - making usageList (13 chroms): 5 millis pass2 - checking and writing primary data (10511 records, 4 fields): 223 millis CompletedMACS2peakCalling