Job ID = 14168098 SRX = ERX3978823 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 24943150 spots for ERR3975878/ERR3975878.sra Written 24943150 spots for ERR3975878/ERR3975878.sra Read 19713303 spots for ERR3975890/ERR3975890.sra Written 19713303 spots for ERR3975890/ERR3975890.sra fastq に変換しました。 bowtie でマッピング中... Your job 14169134 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:24:27 44656453 reads; of these: 44656453 (100.00%) were paired; of these: 13483356 (30.19%) aligned concordantly 0 times 23299672 (52.18%) aligned concordantly exactly 1 time 7873425 (17.63%) aligned concordantly >1 times ---- 13483356 pairs aligned concordantly 0 times; of these: 6062845 (44.97%) aligned discordantly 1 time ---- 7420511 pairs aligned 0 times concordantly or discordantly; of these: 14841022 mates make up the pairs; of these: 10244517 (69.03%) aligned 0 times 941163 (6.34%) aligned exactly 1 time 3655342 (24.63%) aligned >1 times 88.53% overall alignment rate Time searching: 01:24:27 Overall time: 01:24:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6850220 / 36743758 = 0.1864 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 17:11:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 17:11:30: #1 read tag files... INFO @ Fri, 10 Dec 2021 17:11:30: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 17:11:39: 1000000 INFO @ Fri, 10 Dec 2021 17:11:48: 2000000 INFO @ Fri, 10 Dec 2021 17:11:57: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 17:12:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 17:12:00: #1 read tag files... INFO @ Fri, 10 Dec 2021 17:12:00: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 17:12:07: 4000000 INFO @ Fri, 10 Dec 2021 17:12:10: 1000000 INFO @ Fri, 10 Dec 2021 17:12:17: 5000000 INFO @ Fri, 10 Dec 2021 17:12:21: 2000000 INFO @ Fri, 10 Dec 2021 17:12:27: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 17:12:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 17:12:30: #1 read tag files... INFO @ Fri, 10 Dec 2021 17:12:30: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 17:12:31: 3000000 INFO @ Fri, 10 Dec 2021 17:12:38: 7000000 INFO @ Fri, 10 Dec 2021 17:12:41: 1000000 INFO @ Fri, 10 Dec 2021 17:12:42: 4000000 INFO @ Fri, 10 Dec 2021 17:12:49: 8000000 INFO @ Fri, 10 Dec 2021 17:12:51: 2000000 INFO @ Fri, 10 Dec 2021 17:12:52: 5000000 INFO @ Fri, 10 Dec 2021 17:12:59: 9000000 INFO @ Fri, 10 Dec 2021 17:13:02: 3000000 INFO @ Fri, 10 Dec 2021 17:13:03: 6000000 INFO @ Fri, 10 Dec 2021 17:13:10: 10000000 INFO @ Fri, 10 Dec 2021 17:13:13: 4000000 INFO @ Fri, 10 Dec 2021 17:13:13: 7000000 INFO @ Fri, 10 Dec 2021 17:13:21: 11000000 INFO @ Fri, 10 Dec 2021 17:13:24: 8000000 INFO @ Fri, 10 Dec 2021 17:13:24: 5000000 INFO @ Fri, 10 Dec 2021 17:13:31: 12000000 INFO @ Fri, 10 Dec 2021 17:13:34: 9000000 INFO @ Fri, 10 Dec 2021 17:13:34: 6000000 INFO @ Fri, 10 Dec 2021 17:13:42: 13000000 INFO @ Fri, 10 Dec 2021 17:13:45: 10000000 INFO @ Fri, 10 Dec 2021 17:13:45: 7000000 INFO @ Fri, 10 Dec 2021 17:13:52: 14000000 INFO @ Fri, 10 Dec 2021 17:13:56: 8000000 INFO @ Fri, 10 Dec 2021 17:13:56: 11000000 INFO @ Fri, 10 Dec 2021 17:14:03: 15000000 INFO @ Fri, 10 Dec 2021 17:14:06: 9000000 INFO @ Fri, 10 Dec 2021 17:14:06: 12000000 INFO @ Fri, 10 Dec 2021 17:14:14: 16000000 INFO @ Fri, 10 Dec 2021 17:14:17: 10000000 INFO @ Fri, 10 Dec 2021 17:14:17: 13000000 INFO @ Fri, 10 Dec 2021 17:14:24: 17000000 INFO @ Fri, 10 Dec 2021 17:14:27: 11000000 INFO @ Fri, 10 Dec 2021 17:14:28: 14000000 INFO @ Fri, 10 Dec 2021 17:14:35: 18000000 INFO @ Fri, 10 Dec 2021 17:14:38: 12000000 INFO @ Fri, 10 Dec 2021 17:14:38: 15000000 INFO @ Fri, 10 Dec 2021 17:14:46: 19000000 INFO @ Fri, 10 Dec 2021 17:14:48: 13000000 INFO @ Fri, 10 Dec 2021 17:14:49: 16000000 INFO @ Fri, 10 Dec 2021 17:14:56: 20000000 INFO @ Fri, 10 Dec 2021 17:14:59: 14000000 INFO @ Fri, 10 Dec 2021 17:15:00: 17000000 INFO @ Fri, 10 Dec 2021 17:15:07: 21000000 INFO @ Fri, 10 Dec 2021 17:15:09: 15000000 INFO @ Fri, 10 Dec 2021 17:15:10: 18000000 INFO @ Fri, 10 Dec 2021 17:15:18: 22000000 INFO @ Fri, 10 Dec 2021 17:15:20: 16000000 INFO @ Fri, 10 Dec 2021 17:15:21: 19000000 INFO @ Fri, 10 Dec 2021 17:15:28: 23000000 INFO @ Fri, 10 Dec 2021 17:15:31: 17000000 INFO @ Fri, 10 Dec 2021 17:15:32: 20000000 INFO @ Fri, 10 Dec 2021 17:15:39: 24000000 INFO @ Fri, 10 Dec 2021 17:15:41: 18000000 INFO @ Fri, 10 Dec 2021 17:15:43: 21000000 INFO @ Fri, 10 Dec 2021 17:15:50: 25000000 INFO @ Fri, 10 Dec 2021 17:15:52: 19000000 INFO @ Fri, 10 Dec 2021 17:15:53: 22000000 INFO @ Fri, 10 Dec 2021 17:16:01: 26000000 INFO @ Fri, 10 Dec 2021 17:16:03: 20000000 INFO @ Fri, 10 Dec 2021 17:16:04: 23000000 INFO @ Fri, 10 Dec 2021 17:16:11: 27000000 INFO @ Fri, 10 Dec 2021 17:16:13: 21000000 INFO @ Fri, 10 Dec 2021 17:16:15: 24000000 INFO @ Fri, 10 Dec 2021 17:16:22: 28000000 INFO @ Fri, 10 Dec 2021 17:16:24: 22000000 INFO @ Fri, 10 Dec 2021 17:16:26: 25000000 INFO @ Fri, 10 Dec 2021 17:16:33: 29000000 INFO @ Fri, 10 Dec 2021 17:16:35: 23000000 INFO @ Fri, 10 Dec 2021 17:16:37: 26000000 INFO @ Fri, 10 Dec 2021 17:16:44: 30000000 INFO @ Fri, 10 Dec 2021 17:16:45: 24000000 INFO @ Fri, 10 Dec 2021 17:16:47: 27000000 INFO @ Fri, 10 Dec 2021 17:16:54: 31000000 INFO @ Fri, 10 Dec 2021 17:16:56: 25000000 INFO @ Fri, 10 Dec 2021 17:16:58: 28000000 INFO @ Fri, 10 Dec 2021 17:17:05: 32000000 INFO @ Fri, 10 Dec 2021 17:17:07: 26000000 INFO @ Fri, 10 Dec 2021 17:17:09: 29000000 INFO @ Fri, 10 Dec 2021 17:17:16: 33000000 INFO @ Fri, 10 Dec 2021 17:17:18: 27000000 INFO @ Fri, 10 Dec 2021 17:17:20: 30000000 INFO @ Fri, 10 Dec 2021 17:17:26: 34000000 INFO @ Fri, 10 Dec 2021 17:17:29: 28000000 INFO @ Fri, 10 Dec 2021 17:17:30: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 17:17:37: 35000000 INFO @ Fri, 10 Dec 2021 17:17:39: 29000000 INFO @ Fri, 10 Dec 2021 17:17:41: 32000000 INFO @ Fri, 10 Dec 2021 17:17:48: 36000000 INFO @ Fri, 10 Dec 2021 17:17:50: 30000000 INFO @ Fri, 10 Dec 2021 17:17:52: 33000000 INFO @ Fri, 10 Dec 2021 17:17:58: 37000000 INFO @ Fri, 10 Dec 2021 17:18:00: 31000000 INFO @ Fri, 10 Dec 2021 17:18:03: 34000000 INFO @ Fri, 10 Dec 2021 17:18:09: 38000000 INFO @ Fri, 10 Dec 2021 17:18:11: 32000000 INFO @ Fri, 10 Dec 2021 17:18:13: 35000000 INFO @ Fri, 10 Dec 2021 17:18:20: 39000000 INFO @ Fri, 10 Dec 2021 17:18:22: 33000000 INFO @ Fri, 10 Dec 2021 17:18:24: 36000000 INFO @ Fri, 10 Dec 2021 17:18:31: 40000000 INFO @ Fri, 10 Dec 2021 17:18:32: 34000000 INFO @ Fri, 10 Dec 2021 17:18:35: 37000000 INFO @ Fri, 10 Dec 2021 17:18:42: 41000000 INFO @ Fri, 10 Dec 2021 17:18:43: 35000000 INFO @ Fri, 10 Dec 2021 17:18:46: 38000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 17:18:52: 42000000 INFO @ Fri, 10 Dec 2021 17:18:54: 36000000 INFO @ Fri, 10 Dec 2021 17:18:57: 39000000 INFO @ Fri, 10 Dec 2021 17:19:03: 43000000 INFO @ Fri, 10 Dec 2021 17:19:04: 37000000 INFO @ Fri, 10 Dec 2021 17:19:08: 40000000 INFO @ Fri, 10 Dec 2021 17:19:14: 44000000 INFO @ Fri, 10 Dec 2021 17:19:15: 38000000 INFO @ Fri, 10 Dec 2021 17:19:19: 41000000 INFO @ Fri, 10 Dec 2021 17:19:25: 45000000 INFO @ Fri, 10 Dec 2021 17:19:25: 39000000 INFO @ Fri, 10 Dec 2021 17:19:30: 42000000 INFO @ Fri, 10 Dec 2021 17:19:35: 46000000 INFO @ Fri, 10 Dec 2021 17:19:36: 40000000 INFO @ Fri, 10 Dec 2021 17:19:41: 43000000 INFO @ Fri, 10 Dec 2021 17:19:46: 47000000 INFO @ Fri, 10 Dec 2021 17:19:47: 41000000 INFO @ Fri, 10 Dec 2021 17:19:51: 44000000 INFO @ Fri, 10 Dec 2021 17:19:57: 48000000 INFO @ Fri, 10 Dec 2021 17:19:58: 42000000 INFO @ Fri, 10 Dec 2021 17:20:02: 45000000 INFO @ Fri, 10 Dec 2021 17:20:07: 49000000 INFO @ Fri, 10 Dec 2021 17:20:08: 43000000 INFO @ Fri, 10 Dec 2021 17:20:13: 46000000 INFO @ Fri, 10 Dec 2021 17:20:18: 50000000 INFO @ Fri, 10 Dec 2021 17:20:19: 44000000 INFO @ Fri, 10 Dec 2021 17:20:24: 47000000 INFO @ Fri, 10 Dec 2021 17:20:29: 51000000 INFO @ Fri, 10 Dec 2021 17:20:30: 45000000 INFO @ Fri, 10 Dec 2021 17:20:35: 48000000 INFO @ Fri, 10 Dec 2021 17:20:40: 52000000 INFO @ Fri, 10 Dec 2021 17:20:40: 46000000 INFO @ Fri, 10 Dec 2021 17:20:46: 49000000 INFO @ Fri, 10 Dec 2021 17:20:50: 53000000 INFO @ Fri, 10 Dec 2021 17:20:51: 47000000 INFO @ Fri, 10 Dec 2021 17:20:57: 50000000 INFO @ Fri, 10 Dec 2021 17:21:01: 48000000 INFO @ Fri, 10 Dec 2021 17:21:01: 54000000 INFO @ Fri, 10 Dec 2021 17:21:07: 51000000 INFO @ Fri, 10 Dec 2021 17:21:12: 49000000 INFO @ Fri, 10 Dec 2021 17:21:12: 55000000 INFO @ Fri, 10 Dec 2021 17:21:18: 52000000 INFO @ Fri, 10 Dec 2021 17:21:23: 50000000 INFO @ Fri, 10 Dec 2021 17:21:23: 56000000 INFO @ Fri, 10 Dec 2021 17:21:29: 53000000 INFO @ Fri, 10 Dec 2021 17:21:33: 51000000 INFO @ Fri, 10 Dec 2021 17:21:34: 57000000 INFO @ Fri, 10 Dec 2021 17:21:40: 54000000 INFO @ Fri, 10 Dec 2021 17:21:44: 52000000 INFO @ Fri, 10 Dec 2021 17:21:45: 58000000 INFO @ Fri, 10 Dec 2021 17:21:51: 55000000 INFO @ Fri, 10 Dec 2021 17:21:54: 53000000 INFO @ Fri, 10 Dec 2021 17:21:56: 59000000 INFO @ Fri, 10 Dec 2021 17:22:02: 56000000 INFO @ Fri, 10 Dec 2021 17:22:05: 54000000 INFO @ Fri, 10 Dec 2021 17:22:06: 60000000 INFO @ Fri, 10 Dec 2021 17:22:13: 57000000 INFO @ Fri, 10 Dec 2021 17:22:16: 55000000 INFO @ Fri, 10 Dec 2021 17:22:17: 61000000 INFO @ Fri, 10 Dec 2021 17:22:24: 58000000 INFO @ Fri, 10 Dec 2021 17:22:27: 56000000 INFO @ Fri, 10 Dec 2021 17:22:28: 62000000 INFO @ Fri, 10 Dec 2021 17:22:35: 59000000 INFO @ Fri, 10 Dec 2021 17:22:38: 57000000 INFO @ Fri, 10 Dec 2021 17:22:39: 63000000 INFO @ Fri, 10 Dec 2021 17:22:46: 60000000 INFO @ Fri, 10 Dec 2021 17:22:48: 58000000 INFO @ Fri, 10 Dec 2021 17:22:50: 64000000 INFO @ Fri, 10 Dec 2021 17:22:57: 61000000 INFO @ Fri, 10 Dec 2021 17:22:59: 59000000 INFO @ Fri, 10 Dec 2021 17:23:00: 65000000 INFO @ Fri, 10 Dec 2021 17:23:04: #1 tag size is determined as 118 bps INFO @ Fri, 10 Dec 2021 17:23:04: #1 tag size = 118 INFO @ Fri, 10 Dec 2021 17:23:04: #1 total tags in treatment: 24903310 INFO @ Fri, 10 Dec 2021 17:23:04: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 17:23:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 17:23:05: #1 tags after filtering in treatment: 18309498 INFO @ Fri, 10 Dec 2021 17:23:05: #1 Redundant rate of treatment: 0.26 INFO @ Fri, 10 Dec 2021 17:23:05: #1 finished! INFO @ Fri, 10 Dec 2021 17:23:05: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 17:23:05: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 17:23:06: #2 number of paired peaks: 1835 INFO @ Fri, 10 Dec 2021 17:23:06: start model_add_line... INFO @ Fri, 10 Dec 2021 17:23:06: start X-correlation... INFO @ Fri, 10 Dec 2021 17:23:06: end of X-cor INFO @ Fri, 10 Dec 2021 17:23:06: #2 finished! INFO @ Fri, 10 Dec 2021 17:23:06: #2 predicted fragment length is 121 bps INFO @ Fri, 10 Dec 2021 17:23:06: #2 alternative fragment length(s) may be 121 bps INFO @ Fri, 10 Dec 2021 17:23:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.05_model.r WARNING @ Fri, 10 Dec 2021 17:23:06: #2 Since the d (121) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 17:23:06: #2 You may need to consider one of the other alternative d(s): 121 WARNING @ Fri, 10 Dec 2021 17:23:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 17:23:06: #3 Call peaks... INFO @ Fri, 10 Dec 2021 17:23:06: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 17:23:08: 62000000 INFO @ Fri, 10 Dec 2021 17:23:09: 60000000 INFO @ Fri, 10 Dec 2021 17:23:18: 63000000 INFO @ Fri, 10 Dec 2021 17:23:20: 61000000 INFO @ Fri, 10 Dec 2021 17:23:28: 64000000 INFO @ Fri, 10 Dec 2021 17:23:30: 62000000 INFO @ Fri, 10 Dec 2021 17:23:39: 65000000 INFO @ Fri, 10 Dec 2021 17:23:41: 63000000 INFO @ Fri, 10 Dec 2021 17:23:43: #1 tag size is determined as 118 bps INFO @ Fri, 10 Dec 2021 17:23:43: #1 tag size = 118 INFO @ Fri, 10 Dec 2021 17:23:43: #1 total tags in treatment: 24903310 INFO @ Fri, 10 Dec 2021 17:23:43: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 17:23:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 17:23:43: #1 tags after filtering in treatment: 18309498 INFO @ Fri, 10 Dec 2021 17:23:43: #1 Redundant rate of treatment: 0.26 INFO @ Fri, 10 Dec 2021 17:23:43: #1 finished! INFO @ Fri, 10 Dec 2021 17:23:43: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 17:23:43: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 17:23:44: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 17:23:44: #2 number of paired peaks: 1835 INFO @ Fri, 10 Dec 2021 17:23:44: start model_add_line... INFO @ Fri, 10 Dec 2021 17:23:45: start X-correlation... INFO @ Fri, 10 Dec 2021 17:23:45: end of X-cor INFO @ Fri, 10 Dec 2021 17:23:45: #2 finished! INFO @ Fri, 10 Dec 2021 17:23:45: #2 predicted fragment length is 121 bps INFO @ Fri, 10 Dec 2021 17:23:45: #2 alternative fragment length(s) may be 121 bps INFO @ Fri, 10 Dec 2021 17:23:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.10_model.r WARNING @ Fri, 10 Dec 2021 17:23:45: #2 Since the d (121) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 17:23:45: #2 You may need to consider one of the other alternative d(s): 121 WARNING @ Fri, 10 Dec 2021 17:23:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 17:23:45: #3 Call peaks... INFO @ Fri, 10 Dec 2021 17:23:45: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 17:23:50: 64000000 INFO @ Fri, 10 Dec 2021 17:23:59: 65000000 INFO @ Fri, 10 Dec 2021 17:24:03: #1 tag size is determined as 118 bps INFO @ Fri, 10 Dec 2021 17:24:03: #1 tag size = 118 INFO @ Fri, 10 Dec 2021 17:24:03: #1 total tags in treatment: 24903310 INFO @ Fri, 10 Dec 2021 17:24:03: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 17:24:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 17:24:03: #1 tags after filtering in treatment: 18309498 INFO @ Fri, 10 Dec 2021 17:24:03: #1 Redundant rate of treatment: 0.26 INFO @ Fri, 10 Dec 2021 17:24:03: #1 finished! INFO @ Fri, 10 Dec 2021 17:24:03: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 17:24:03: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 17:24:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.05_peaks.xls INFO @ Fri, 10 Dec 2021 17:24:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 17:24:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.05_summits.bed INFO @ Fri, 10 Dec 2021 17:24:03: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (15080 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 17:24:04: #2 number of paired peaks: 1835 INFO @ Fri, 10 Dec 2021 17:24:04: start model_add_line... INFO @ Fri, 10 Dec 2021 17:24:05: start X-correlation... INFO @ Fri, 10 Dec 2021 17:24:05: end of X-cor INFO @ Fri, 10 Dec 2021 17:24:05: #2 finished! INFO @ Fri, 10 Dec 2021 17:24:05: #2 predicted fragment length is 121 bps INFO @ Fri, 10 Dec 2021 17:24:05: #2 alternative fragment length(s) may be 121 bps INFO @ Fri, 10 Dec 2021 17:24:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.20_model.r WARNING @ Fri, 10 Dec 2021 17:24:05: #2 Since the d (121) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 17:24:05: #2 You may need to consider one of the other alternative d(s): 121 WARNING @ Fri, 10 Dec 2021 17:24:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 17:24:05: #3 Call peaks... INFO @ Fri, 10 Dec 2021 17:24:05: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 17:24:21: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 17:24:40: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.10_peaks.xls INFO @ Fri, 10 Dec 2021 17:24:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 17:24:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.10_summits.bed INFO @ Fri, 10 Dec 2021 17:24:40: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11189 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 17:24:41: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 17:25:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.20_peaks.xls INFO @ Fri, 10 Dec 2021 17:25:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 17:25:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978823/ERX3978823.20_summits.bed INFO @ Fri, 10 Dec 2021 17:25:00: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (6591 records, 4 fields): 7 millis CompletedMACS2peakCalling