Job ID = 14168026 SRX = ERX3978814 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 20947131 spots for ERR3975857/ERR3975857.sra Written 20947131 spots for ERR3975857/ERR3975857.sra Read 26642972 spots for ERR3975863/ERR3975863.sra Written 26642972 spots for ERR3975863/ERR3975863.sra fastq に変換しました。 bowtie でマッピング中... Your job 14169055 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:47:58 47590103 reads; of these: 47590103 (100.00%) were paired; of these: 8805112 (18.50%) aligned concordantly 0 times 24655777 (51.81%) aligned concordantly exactly 1 time 14129214 (29.69%) aligned concordantly >1 times ---- 8805112 pairs aligned concordantly 0 times; of these: 3638908 (41.33%) aligned discordantly 1 time ---- 5166204 pairs aligned 0 times concordantly or discordantly; of these: 10332408 mates make up the pairs; of these: 5112743 (49.48%) aligned 0 times 820732 (7.94%) aligned exactly 1 time 4398933 (42.57%) aligned >1 times 94.63% overall alignment rate Time searching: 01:47:59 Overall time: 01:47:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 10811822 / 42003802 = 0.2574 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:45:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:45:44: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:45:44: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:45:54: 1000000 INFO @ Fri, 10 Dec 2021 16:46:04: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:46:14: 3000000 INFO @ Fri, 10 Dec 2021 16:46:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:46:14: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:46:14: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:46:25: 4000000 INFO @ Fri, 10 Dec 2021 16:46:26: 1000000 INFO @ Fri, 10 Dec 2021 16:46:36: 5000000 INFO @ Fri, 10 Dec 2021 16:46:37: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:46:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:46:44: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:46:44: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:46:47: 6000000 INFO @ Fri, 10 Dec 2021 16:46:48: 3000000 INFO @ Fri, 10 Dec 2021 16:46:56: 1000000 INFO @ Fri, 10 Dec 2021 16:46:58: 7000000 INFO @ Fri, 10 Dec 2021 16:47:00: 4000000 INFO @ Fri, 10 Dec 2021 16:47:07: 2000000 INFO @ Fri, 10 Dec 2021 16:47:09: 8000000 INFO @ Fri, 10 Dec 2021 16:47:12: 5000000 INFO @ Fri, 10 Dec 2021 16:47:19: 3000000 INFO @ Fri, 10 Dec 2021 16:47:21: 9000000 INFO @ Fri, 10 Dec 2021 16:47:23: 6000000 INFO @ Fri, 10 Dec 2021 16:47:31: 4000000 INFO @ Fri, 10 Dec 2021 16:47:32: 10000000 INFO @ Fri, 10 Dec 2021 16:47:35: 7000000 INFO @ Fri, 10 Dec 2021 16:47:42: 5000000 INFO @ Fri, 10 Dec 2021 16:47:43: 11000000 INFO @ Fri, 10 Dec 2021 16:47:46: 8000000 INFO @ Fri, 10 Dec 2021 16:47:54: 6000000 INFO @ Fri, 10 Dec 2021 16:47:54: 12000000 INFO @ Fri, 10 Dec 2021 16:47:58: 9000000 INFO @ Fri, 10 Dec 2021 16:48:05: 13000000 INFO @ Fri, 10 Dec 2021 16:48:05: 7000000 INFO @ Fri, 10 Dec 2021 16:48:09: 10000000 INFO @ Fri, 10 Dec 2021 16:48:16: 14000000 INFO @ Fri, 10 Dec 2021 16:48:17: 8000000 INFO @ Fri, 10 Dec 2021 16:48:20: 11000000 INFO @ Fri, 10 Dec 2021 16:48:27: 15000000 INFO @ Fri, 10 Dec 2021 16:48:28: 9000000 INFO @ Fri, 10 Dec 2021 16:48:32: 12000000 INFO @ Fri, 10 Dec 2021 16:48:38: 16000000 INFO @ Fri, 10 Dec 2021 16:48:40: 10000000 INFO @ Fri, 10 Dec 2021 16:48:43: 13000000 INFO @ Fri, 10 Dec 2021 16:48:49: 17000000 INFO @ Fri, 10 Dec 2021 16:48:51: 11000000 INFO @ Fri, 10 Dec 2021 16:48:54: 14000000 INFO @ Fri, 10 Dec 2021 16:49:00: 18000000 INFO @ Fri, 10 Dec 2021 16:49:02: 12000000 INFO @ Fri, 10 Dec 2021 16:49:06: 15000000 INFO @ Fri, 10 Dec 2021 16:49:11: 19000000 INFO @ Fri, 10 Dec 2021 16:49:14: 13000000 INFO @ Fri, 10 Dec 2021 16:49:17: 16000000 INFO @ Fri, 10 Dec 2021 16:49:23: 20000000 INFO @ Fri, 10 Dec 2021 16:49:25: 14000000 INFO @ Fri, 10 Dec 2021 16:49:28: 17000000 INFO @ Fri, 10 Dec 2021 16:49:34: 21000000 INFO @ Fri, 10 Dec 2021 16:49:37: 15000000 INFO @ Fri, 10 Dec 2021 16:49:40: 18000000 INFO @ Fri, 10 Dec 2021 16:49:45: 22000000 INFO @ Fri, 10 Dec 2021 16:49:48: 16000000 INFO @ Fri, 10 Dec 2021 16:49:51: 19000000 INFO @ Fri, 10 Dec 2021 16:49:56: 23000000 INFO @ Fri, 10 Dec 2021 16:50:00: 17000000 INFO @ Fri, 10 Dec 2021 16:50:03: 20000000 INFO @ Fri, 10 Dec 2021 16:50:07: 24000000 INFO @ Fri, 10 Dec 2021 16:50:11: 18000000 INFO @ Fri, 10 Dec 2021 16:50:14: 21000000 INFO @ Fri, 10 Dec 2021 16:50:18: 25000000 INFO @ Fri, 10 Dec 2021 16:50:23: 19000000 INFO @ Fri, 10 Dec 2021 16:50:26: 22000000 INFO @ Fri, 10 Dec 2021 16:50:29: 26000000 INFO @ Fri, 10 Dec 2021 16:50:34: 20000000 INFO @ Fri, 10 Dec 2021 16:50:37: 23000000 INFO @ Fri, 10 Dec 2021 16:50:40: 27000000 INFO @ Fri, 10 Dec 2021 16:50:46: 21000000 INFO @ Fri, 10 Dec 2021 16:50:49: 24000000 INFO @ Fri, 10 Dec 2021 16:50:52: 28000000 INFO @ Fri, 10 Dec 2021 16:50:57: 22000000 INFO @ Fri, 10 Dec 2021 16:51:00: 25000000 INFO @ Fri, 10 Dec 2021 16:51:02: 29000000 INFO @ Fri, 10 Dec 2021 16:51:08: 23000000 INFO @ Fri, 10 Dec 2021 16:51:10: 26000000 INFO @ Fri, 10 Dec 2021 16:51:13: 30000000 INFO @ Fri, 10 Dec 2021 16:51:19: 24000000 INFO @ Fri, 10 Dec 2021 16:51:21: 27000000 INFO @ Fri, 10 Dec 2021 16:51:24: 31000000 INFO @ Fri, 10 Dec 2021 16:51:30: 25000000 INFO @ Fri, 10 Dec 2021 16:51:32: 28000000 INFO @ Fri, 10 Dec 2021 16:51:35: 32000000 INFO @ Fri, 10 Dec 2021 16:51:40: 26000000 INFO @ Fri, 10 Dec 2021 16:51:42: 29000000 INFO @ Fri, 10 Dec 2021 16:51:46: 33000000 INFO @ Fri, 10 Dec 2021 16:51:51: 27000000 INFO @ Fri, 10 Dec 2021 16:51:53: 30000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 16:51:57: 34000000 INFO @ Fri, 10 Dec 2021 16:52:02: 28000000 INFO @ Fri, 10 Dec 2021 16:52:03: 31000000 INFO @ Fri, 10 Dec 2021 16:52:08: 35000000 INFO @ Fri, 10 Dec 2021 16:52:13: 29000000 INFO @ Fri, 10 Dec 2021 16:52:14: 32000000 INFO @ Fri, 10 Dec 2021 16:52:18: 36000000 INFO @ Fri, 10 Dec 2021 16:52:23: 30000000 INFO @ Fri, 10 Dec 2021 16:52:25: 33000000 INFO @ Fri, 10 Dec 2021 16:52:29: 37000000 INFO @ Fri, 10 Dec 2021 16:52:34: 31000000 INFO @ Fri, 10 Dec 2021 16:52:35: 34000000 INFO @ Fri, 10 Dec 2021 16:52:40: 38000000 INFO @ Fri, 10 Dec 2021 16:52:45: 32000000 INFO @ Fri, 10 Dec 2021 16:52:46: 35000000 INFO @ Fri, 10 Dec 2021 16:52:50: 39000000 INFO @ Fri, 10 Dec 2021 16:52:56: 33000000 INFO @ Fri, 10 Dec 2021 16:52:56: 36000000 INFO @ Fri, 10 Dec 2021 16:53:01: 40000000 INFO @ Fri, 10 Dec 2021 16:53:06: 34000000 INFO @ Fri, 10 Dec 2021 16:53:07: 37000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 16:53:12: 41000000 INFO @ Fri, 10 Dec 2021 16:53:17: 35000000 INFO @ Fri, 10 Dec 2021 16:53:17: 38000000 INFO @ Fri, 10 Dec 2021 16:53:22: 42000000 INFO @ Fri, 10 Dec 2021 16:53:28: 36000000 INFO @ Fri, 10 Dec 2021 16:53:28: 39000000 INFO @ Fri, 10 Dec 2021 16:53:33: 43000000 INFO @ Fri, 10 Dec 2021 16:53:38: 37000000 INFO @ Fri, 10 Dec 2021 16:53:39: 40000000 INFO @ Fri, 10 Dec 2021 16:53:43: 44000000 INFO @ Fri, 10 Dec 2021 16:53:49: 38000000 INFO @ Fri, 10 Dec 2021 16:53:49: 41000000 INFO @ Fri, 10 Dec 2021 16:53:54: 45000000 INFO @ Fri, 10 Dec 2021 16:53:59: 39000000 INFO @ Fri, 10 Dec 2021 16:54:00: 42000000 INFO @ Fri, 10 Dec 2021 16:54:04: 46000000 INFO @ Fri, 10 Dec 2021 16:54:10: 40000000 INFO @ Fri, 10 Dec 2021 16:54:10: 43000000 INFO @ Fri, 10 Dec 2021 16:54:15: 47000000 INFO @ Fri, 10 Dec 2021 16:54:21: 41000000 INFO @ Fri, 10 Dec 2021 16:54:21: 44000000 INFO @ Fri, 10 Dec 2021 16:54:25: 48000000 INFO @ Fri, 10 Dec 2021 16:54:31: 42000000 INFO @ Fri, 10 Dec 2021 16:54:31: 45000000 INFO @ Fri, 10 Dec 2021 16:54:36: 49000000 INFO @ Fri, 10 Dec 2021 16:54:42: 46000000 INFO @ Fri, 10 Dec 2021 16:54:42: 43000000 INFO @ Fri, 10 Dec 2021 16:54:46: 50000000 INFO @ Fri, 10 Dec 2021 16:54:52: 47000000 INFO @ Fri, 10 Dec 2021 16:54:52: 44000000 INFO @ Fri, 10 Dec 2021 16:54:57: 51000000 INFO @ Fri, 10 Dec 2021 16:55:02: 48000000 INFO @ Fri, 10 Dec 2021 16:55:03: 45000000 INFO @ Fri, 10 Dec 2021 16:55:07: 52000000 INFO @ Fri, 10 Dec 2021 16:55:13: 49000000 INFO @ Fri, 10 Dec 2021 16:55:13: 46000000 INFO @ Fri, 10 Dec 2021 16:55:18: 53000000 INFO @ Fri, 10 Dec 2021 16:55:23: 50000000 INFO @ Fri, 10 Dec 2021 16:55:24: 47000000 INFO @ Fri, 10 Dec 2021 16:55:28: 54000000 INFO @ Fri, 10 Dec 2021 16:55:33: 51000000 INFO @ Fri, 10 Dec 2021 16:55:34: 48000000 INFO @ Fri, 10 Dec 2021 16:55:39: 55000000 INFO @ Fri, 10 Dec 2021 16:55:44: 52000000 INFO @ Fri, 10 Dec 2021 16:55:45: 49000000 INFO @ Fri, 10 Dec 2021 16:55:50: 56000000 INFO @ Fri, 10 Dec 2021 16:55:54: 53000000 INFO @ Fri, 10 Dec 2021 16:55:56: 50000000 INFO @ Fri, 10 Dec 2021 16:56:00: 57000000 INFO @ Fri, 10 Dec 2021 16:56:05: 54000000 INFO @ Fri, 10 Dec 2021 16:56:06: 51000000 INFO @ Fri, 10 Dec 2021 16:56:11: 58000000 INFO @ Fri, 10 Dec 2021 16:56:15: 55000000 INFO @ Fri, 10 Dec 2021 16:56:17: 52000000 INFO @ Fri, 10 Dec 2021 16:56:21: 59000000 INFO @ Fri, 10 Dec 2021 16:56:26: 56000000 INFO @ Fri, 10 Dec 2021 16:56:27: 53000000 INFO @ Fri, 10 Dec 2021 16:56:32: 60000000 INFO @ Fri, 10 Dec 2021 16:56:36: 57000000 INFO @ Fri, 10 Dec 2021 16:56:38: 54000000 INFO @ Fri, 10 Dec 2021 16:56:43: 61000000 INFO @ Fri, 10 Dec 2021 16:56:47: 58000000 INFO @ Fri, 10 Dec 2021 16:56:49: 55000000 INFO @ Fri, 10 Dec 2021 16:56:54: 62000000 INFO @ Fri, 10 Dec 2021 16:56:58: 59000000 INFO @ Fri, 10 Dec 2021 16:56:59: 56000000 INFO @ Fri, 10 Dec 2021 16:57:05: 63000000 INFO @ Fri, 10 Dec 2021 16:57:09: 60000000 INFO @ Fri, 10 Dec 2021 16:57:10: 57000000 INFO @ Fri, 10 Dec 2021 16:57:16: 64000000 INFO @ Fri, 10 Dec 2021 16:57:19: 61000000 INFO @ Fri, 10 Dec 2021 16:57:21: 58000000 INFO @ Fri, 10 Dec 2021 16:57:27: 65000000 INFO @ Fri, 10 Dec 2021 16:57:30: 62000000 INFO @ Fri, 10 Dec 2021 16:57:31: 59000000 INFO @ Fri, 10 Dec 2021 16:57:37: 66000000 INFO @ Fri, 10 Dec 2021 16:57:41: 63000000 INFO @ Fri, 10 Dec 2021 16:57:42: 60000000 INFO @ Fri, 10 Dec 2021 16:57:48: 67000000 INFO @ Fri, 10 Dec 2021 16:57:51: 64000000 INFO @ Fri, 10 Dec 2021 16:57:53: 61000000 INFO @ Fri, 10 Dec 2021 16:57:59: 68000000 INFO @ Fri, 10 Dec 2021 16:58:02: 65000000 INFO @ Fri, 10 Dec 2021 16:58:04: #1 tag size is determined as 118 bps INFO @ Fri, 10 Dec 2021 16:58:04: #1 tag size = 118 INFO @ Fri, 10 Dec 2021 16:58:04: #1 total tags in treatment: 28301859 INFO @ Fri, 10 Dec 2021 16:58:04: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:58:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:58:04: 62000000 INFO @ Fri, 10 Dec 2021 16:58:04: #1 tags after filtering in treatment: 19628025 INFO @ Fri, 10 Dec 2021 16:58:04: #1 Redundant rate of treatment: 0.31 INFO @ Fri, 10 Dec 2021 16:58:04: #1 finished! INFO @ Fri, 10 Dec 2021 16:58:04: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:58:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:58:06: #2 number of paired peaks: 2270 INFO @ Fri, 10 Dec 2021 16:58:06: start model_add_line... INFO @ Fri, 10 Dec 2021 16:58:06: start X-correlation... INFO @ Fri, 10 Dec 2021 16:58:06: end of X-cor INFO @ Fri, 10 Dec 2021 16:58:06: #2 finished! INFO @ Fri, 10 Dec 2021 16:58:06: #2 predicted fragment length is 122 bps INFO @ Fri, 10 Dec 2021 16:58:06: #2 alternative fragment length(s) may be 122 bps INFO @ Fri, 10 Dec 2021 16:58:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.05_model.r WARNING @ Fri, 10 Dec 2021 16:58:06: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:58:06: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Fri, 10 Dec 2021 16:58:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:58:06: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:58:06: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:58:12: 66000000 INFO @ Fri, 10 Dec 2021 16:58:15: 63000000 INFO @ Fri, 10 Dec 2021 16:58:23: 67000000 INFO @ Fri, 10 Dec 2021 16:58:25: 64000000 INFO @ Fri, 10 Dec 2021 16:58:33: 68000000 INFO @ Fri, 10 Dec 2021 16:58:36: 65000000 INFO @ Fri, 10 Dec 2021 16:58:38: #1 tag size is determined as 118 bps INFO @ Fri, 10 Dec 2021 16:58:38: #1 tag size = 118 INFO @ Fri, 10 Dec 2021 16:58:38: #1 total tags in treatment: 28301859 INFO @ Fri, 10 Dec 2021 16:58:38: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:58:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:58:39: #1 tags after filtering in treatment: 19628025 INFO @ Fri, 10 Dec 2021 16:58:39: #1 Redundant rate of treatment: 0.31 INFO @ Fri, 10 Dec 2021 16:58:39: #1 finished! INFO @ Fri, 10 Dec 2021 16:58:39: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:58:39: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:58:40: #2 number of paired peaks: 2270 INFO @ Fri, 10 Dec 2021 16:58:40: start model_add_line... INFO @ Fri, 10 Dec 2021 16:58:40: start X-correlation... INFO @ Fri, 10 Dec 2021 16:58:40: end of X-cor INFO @ Fri, 10 Dec 2021 16:58:40: #2 finished! INFO @ Fri, 10 Dec 2021 16:58:40: #2 predicted fragment length is 122 bps INFO @ Fri, 10 Dec 2021 16:58:40: #2 alternative fragment length(s) may be 122 bps INFO @ Fri, 10 Dec 2021 16:58:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.10_model.r WARNING @ Fri, 10 Dec 2021 16:58:40: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:58:40: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Fri, 10 Dec 2021 16:58:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:58:40: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:58:40: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:58:44: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:58:46: 66000000 INFO @ Fri, 10 Dec 2021 16:58:55: 67000000 INFO @ Fri, 10 Dec 2021 16:59:04: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.05_peaks.xls INFO @ Fri, 10 Dec 2021 16:59:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:59:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.05_summits.bed INFO @ Fri, 10 Dec 2021 16:59:04: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (13046 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 16:59:05: 68000000 INFO @ Fri, 10 Dec 2021 16:59:09: #1 tag size is determined as 118 bps INFO @ Fri, 10 Dec 2021 16:59:09: #1 tag size = 118 INFO @ Fri, 10 Dec 2021 16:59:09: #1 total tags in treatment: 28301859 INFO @ Fri, 10 Dec 2021 16:59:09: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:59:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:59:09: #1 tags after filtering in treatment: 19628025 INFO @ Fri, 10 Dec 2021 16:59:09: #1 Redundant rate of treatment: 0.31 INFO @ Fri, 10 Dec 2021 16:59:09: #1 finished! INFO @ Fri, 10 Dec 2021 16:59:09: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:59:09: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:59:11: #2 number of paired peaks: 2270 INFO @ Fri, 10 Dec 2021 16:59:11: start model_add_line... INFO @ Fri, 10 Dec 2021 16:59:11: start X-correlation... INFO @ Fri, 10 Dec 2021 16:59:11: end of X-cor INFO @ Fri, 10 Dec 2021 16:59:11: #2 finished! INFO @ Fri, 10 Dec 2021 16:59:11: #2 predicted fragment length is 122 bps INFO @ Fri, 10 Dec 2021 16:59:11: #2 alternative fragment length(s) may be 122 bps INFO @ Fri, 10 Dec 2021 16:59:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.20_model.r WARNING @ Fri, 10 Dec 2021 16:59:11: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:59:11: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Fri, 10 Dec 2021 16:59:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:59:11: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:59:11: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:59:17: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:59:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.10_peaks.xls INFO @ Fri, 10 Dec 2021 16:59:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:59:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.10_summits.bed INFO @ Fri, 10 Dec 2021 16:59:36: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10235 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 16:59:50: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 17:00:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.20_peaks.xls INFO @ Fri, 10 Dec 2021 17:00:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 17:00:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978814/ERX3978814.20_summits.bed INFO @ Fri, 10 Dec 2021 17:00:08: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6796 records, 4 fields): 7 millis CompletedMACS2peakCalling