Job ID = 14168010 SRX = ERX3978810 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 29371396 spots for ERR3975852/ERR3975852.sra Written 29371396 spots for ERR3975852/ERR3975852.sra Read 23024858 spots for ERR3975874/ERR3975874.sra Written 23024858 spots for ERR3975874/ERR3975874.sra fastq に変換しました。 bowtie でマッピング中... Your job 14169037 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:50:06 52396254 reads; of these: 52396254 (100.00%) were paired; of these: 13378891 (25.53%) aligned concordantly 0 times 27260318 (52.03%) aligned concordantly exactly 1 time 11757045 (22.44%) aligned concordantly >1 times ---- 13378891 pairs aligned concordantly 0 times; of these: 5482961 (40.98%) aligned discordantly 1 time ---- 7895930 pairs aligned 0 times concordantly or discordantly; of these: 15791860 mates make up the pairs; of these: 9717065 (61.53%) aligned 0 times 987372 (6.25%) aligned exactly 1 time 5087423 (32.22%) aligned >1 times 90.73% overall alignment rate Time searching: 01:50:07 Overall time: 01:50:07 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9546570 / 43969130 = 0.2171 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:43:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:43:42: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:43:42: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:43:50: 1000000 INFO @ Fri, 10 Dec 2021 16:43:57: 2000000 INFO @ Fri, 10 Dec 2021 16:44:04: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:44:11: 4000000 INFO @ Fri, 10 Dec 2021 16:44:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:44:12: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:44:12: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:44:20: 5000000 INFO @ Fri, 10 Dec 2021 16:44:22: 1000000 INFO @ Fri, 10 Dec 2021 16:44:30: 6000000 INFO @ Fri, 10 Dec 2021 16:44:32: 2000000 INFO @ Fri, 10 Dec 2021 16:44:39: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:44:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:44:42: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:44:42: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:44:43: 3000000 INFO @ Fri, 10 Dec 2021 16:44:49: 8000000 INFO @ Fri, 10 Dec 2021 16:44:52: 1000000 INFO @ Fri, 10 Dec 2021 16:44:53: 4000000 INFO @ Fri, 10 Dec 2021 16:44:58: 9000000 INFO @ Fri, 10 Dec 2021 16:45:01: 2000000 INFO @ Fri, 10 Dec 2021 16:45:04: 5000000 INFO @ Fri, 10 Dec 2021 16:45:08: 10000000 INFO @ Fri, 10 Dec 2021 16:45:10: 3000000 INFO @ Fri, 10 Dec 2021 16:45:14: 6000000 INFO @ Fri, 10 Dec 2021 16:45:17: 11000000 INFO @ Fri, 10 Dec 2021 16:45:20: 4000000 INFO @ Fri, 10 Dec 2021 16:45:25: 7000000 INFO @ Fri, 10 Dec 2021 16:45:27: 12000000 INFO @ Fri, 10 Dec 2021 16:45:29: 5000000 INFO @ Fri, 10 Dec 2021 16:45:36: 8000000 INFO @ Fri, 10 Dec 2021 16:45:36: 13000000 INFO @ Fri, 10 Dec 2021 16:45:39: 6000000 INFO @ Fri, 10 Dec 2021 16:45:45: 14000000 INFO @ Fri, 10 Dec 2021 16:45:46: 9000000 INFO @ Fri, 10 Dec 2021 16:45:48: 7000000 INFO @ Fri, 10 Dec 2021 16:45:55: 15000000 INFO @ Fri, 10 Dec 2021 16:45:57: 10000000 INFO @ Fri, 10 Dec 2021 16:45:57: 8000000 INFO @ Fri, 10 Dec 2021 16:46:04: 16000000 INFO @ Fri, 10 Dec 2021 16:46:07: 9000000 INFO @ Fri, 10 Dec 2021 16:46:07: 11000000 INFO @ Fri, 10 Dec 2021 16:46:14: 17000000 INFO @ Fri, 10 Dec 2021 16:46:16: 10000000 INFO @ Fri, 10 Dec 2021 16:46:18: 12000000 INFO @ Fri, 10 Dec 2021 16:46:23: 18000000 INFO @ Fri, 10 Dec 2021 16:46:25: 11000000 INFO @ Fri, 10 Dec 2021 16:46:28: 13000000 INFO @ Fri, 10 Dec 2021 16:46:32: 19000000 INFO @ Fri, 10 Dec 2021 16:46:35: 12000000 INFO @ Fri, 10 Dec 2021 16:46:39: 14000000 INFO @ Fri, 10 Dec 2021 16:46:42: 20000000 INFO @ Fri, 10 Dec 2021 16:46:44: 13000000 INFO @ Fri, 10 Dec 2021 16:46:49: 15000000 INFO @ Fri, 10 Dec 2021 16:46:51: 21000000 INFO @ Fri, 10 Dec 2021 16:46:53: 14000000 INFO @ Fri, 10 Dec 2021 16:47:00: 16000000 INFO @ Fri, 10 Dec 2021 16:47:01: 22000000 INFO @ Fri, 10 Dec 2021 16:47:03: 15000000 INFO @ Fri, 10 Dec 2021 16:47:10: 23000000 INFO @ Fri, 10 Dec 2021 16:47:10: 17000000 INFO @ Fri, 10 Dec 2021 16:47:12: 16000000 INFO @ Fri, 10 Dec 2021 16:47:19: 24000000 INFO @ Fri, 10 Dec 2021 16:47:21: 18000000 INFO @ Fri, 10 Dec 2021 16:47:22: 17000000 INFO @ Fri, 10 Dec 2021 16:47:29: 25000000 INFO @ Fri, 10 Dec 2021 16:47:31: 18000000 INFO @ Fri, 10 Dec 2021 16:47:31: 19000000 INFO @ Fri, 10 Dec 2021 16:47:38: 26000000 INFO @ Fri, 10 Dec 2021 16:47:40: 19000000 INFO @ Fri, 10 Dec 2021 16:47:42: 20000000 INFO @ Fri, 10 Dec 2021 16:47:48: 27000000 INFO @ Fri, 10 Dec 2021 16:47:50: 20000000 INFO @ Fri, 10 Dec 2021 16:47:52: 21000000 INFO @ Fri, 10 Dec 2021 16:47:57: 28000000 INFO @ Fri, 10 Dec 2021 16:47:59: 21000000 INFO @ Fri, 10 Dec 2021 16:48:03: 22000000 INFO @ Fri, 10 Dec 2021 16:48:06: 29000000 INFO @ Fri, 10 Dec 2021 16:48:09: 22000000 INFO @ Fri, 10 Dec 2021 16:48:13: 23000000 INFO @ Fri, 10 Dec 2021 16:48:16: 30000000 INFO @ Fri, 10 Dec 2021 16:48:18: 23000000 INFO @ Fri, 10 Dec 2021 16:48:24: 24000000 INFO @ Fri, 10 Dec 2021 16:48:26: 31000000 INFO @ Fri, 10 Dec 2021 16:48:27: 24000000 INFO @ Fri, 10 Dec 2021 16:48:34: 25000000 INFO @ Fri, 10 Dec 2021 16:48:35: 32000000 INFO @ Fri, 10 Dec 2021 16:48:37: 25000000 INFO @ Fri, 10 Dec 2021 16:48:45: 33000000 INFO @ Fri, 10 Dec 2021 16:48:45: 26000000 INFO @ Fri, 10 Dec 2021 16:48:46: 26000000 INFO @ Fri, 10 Dec 2021 16:48:54: 34000000 INFO @ Fri, 10 Dec 2021 16:48:56: 27000000 INFO @ Fri, 10 Dec 2021 16:48:56: 27000000 INFO @ Fri, 10 Dec 2021 16:49:03: 35000000 INFO @ Fri, 10 Dec 2021 16:49:07: 28000000 INFO @ Fri, 10 Dec 2021 16:49:07: 28000000 INFO @ Fri, 10 Dec 2021 16:49:12: 36000000 INFO @ Fri, 10 Dec 2021 16:49:18: 29000000 INFO @ Fri, 10 Dec 2021 16:49:19: 29000000 INFO @ Fri, 10 Dec 2021 16:49:21: 37000000 INFO @ Fri, 10 Dec 2021 16:49:30: 30000000 INFO @ Fri, 10 Dec 2021 16:49:30: 30000000 INFO @ Fri, 10 Dec 2021 16:49:30: 38000000 INFO @ Fri, 10 Dec 2021 16:49:39: 39000000 INFO @ Fri, 10 Dec 2021 16:49:42: 31000000 INFO @ Fri, 10 Dec 2021 16:49:42: 31000000 INFO @ Fri, 10 Dec 2021 16:49:49: 40000000 INFO @ Fri, 10 Dec 2021 16:49:53: 32000000 INFO @ Fri, 10 Dec 2021 16:49:54: 32000000 INFO @ Fri, 10 Dec 2021 16:49:58: 41000000 INFO @ Fri, 10 Dec 2021 16:50:03: 33000000 INFO @ Fri, 10 Dec 2021 16:50:04: 33000000 INFO @ Fri, 10 Dec 2021 16:50:08: 42000000 INFO @ Fri, 10 Dec 2021 16:50:12: 34000000 INFO @ Fri, 10 Dec 2021 16:50:15: 34000000 INFO @ Fri, 10 Dec 2021 16:50:17: 43000000 INFO @ Fri, 10 Dec 2021 16:50:21: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 16:50:25: 35000000 INFO @ Fri, 10 Dec 2021 16:50:27: 44000000 INFO @ Fri, 10 Dec 2021 16:50:31: 36000000 INFO @ Fri, 10 Dec 2021 16:50:36: 36000000 INFO @ Fri, 10 Dec 2021 16:50:36: 45000000 INFO @ Fri, 10 Dec 2021 16:50:40: 37000000 INFO @ Fri, 10 Dec 2021 16:50:46: 46000000 INFO @ Fri, 10 Dec 2021 16:50:46: 37000000 INFO @ Fri, 10 Dec 2021 16:50:50: 38000000 INFO @ Fri, 10 Dec 2021 16:50:55: 47000000 INFO @ Fri, 10 Dec 2021 16:50:57: 38000000 INFO @ Fri, 10 Dec 2021 16:50:59: 39000000 INFO @ Fri, 10 Dec 2021 16:51:05: 48000000 INFO @ Fri, 10 Dec 2021 16:51:07: 39000000 INFO @ Fri, 10 Dec 2021 16:51:09: 40000000 INFO @ Fri, 10 Dec 2021 16:51:14: 49000000 INFO @ Fri, 10 Dec 2021 16:51:17: 40000000 INFO @ Fri, 10 Dec 2021 16:51:18: 41000000 INFO @ Fri, 10 Dec 2021 16:51:24: 50000000 INFO @ Fri, 10 Dec 2021 16:51:28: 42000000 INFO @ Fri, 10 Dec 2021 16:51:28: 41000000 INFO @ Fri, 10 Dec 2021 16:51:33: 51000000 INFO @ Fri, 10 Dec 2021 16:51:37: 43000000 INFO @ Fri, 10 Dec 2021 16:51:38: 42000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 16:51:43: 52000000 INFO @ Fri, 10 Dec 2021 16:51:46: 44000000 INFO @ Fri, 10 Dec 2021 16:51:49: 43000000 INFO @ Fri, 10 Dec 2021 16:51:52: 53000000 INFO @ Fri, 10 Dec 2021 16:51:55: 45000000 INFO @ Fri, 10 Dec 2021 16:51:59: 44000000 INFO @ Fri, 10 Dec 2021 16:52:01: 54000000 INFO @ Fri, 10 Dec 2021 16:52:04: 46000000 INFO @ Fri, 10 Dec 2021 16:52:09: 45000000 INFO @ Fri, 10 Dec 2021 16:52:10: 55000000 INFO @ Fri, 10 Dec 2021 16:52:13: 47000000 INFO @ Fri, 10 Dec 2021 16:52:19: 56000000 INFO @ Fri, 10 Dec 2021 16:52:20: 46000000 INFO @ Fri, 10 Dec 2021 16:52:23: 48000000 INFO @ Fri, 10 Dec 2021 16:52:28: 57000000 INFO @ Fri, 10 Dec 2021 16:52:30: 47000000 INFO @ Fri, 10 Dec 2021 16:52:32: 49000000 INFO @ Fri, 10 Dec 2021 16:52:37: 58000000 INFO @ Fri, 10 Dec 2021 16:52:40: 48000000 INFO @ Fri, 10 Dec 2021 16:52:41: 50000000 INFO @ Fri, 10 Dec 2021 16:52:46: 59000000 INFO @ Fri, 10 Dec 2021 16:52:50: 51000000 INFO @ Fri, 10 Dec 2021 16:52:51: 49000000 INFO @ Fri, 10 Dec 2021 16:52:55: 60000000 INFO @ Fri, 10 Dec 2021 16:52:59: 52000000 INFO @ Fri, 10 Dec 2021 16:53:01: 50000000 INFO @ Fri, 10 Dec 2021 16:53:05: 61000000 INFO @ Fri, 10 Dec 2021 16:53:09: 53000000 INFO @ Fri, 10 Dec 2021 16:53:11: 51000000 INFO @ Fri, 10 Dec 2021 16:53:14: 62000000 INFO @ Fri, 10 Dec 2021 16:53:17: 54000000 INFO @ Fri, 10 Dec 2021 16:53:22: 52000000 INFO @ Fri, 10 Dec 2021 16:53:23: 63000000 INFO @ Fri, 10 Dec 2021 16:53:27: 55000000 INFO @ Fri, 10 Dec 2021 16:53:32: 64000000 INFO @ Fri, 10 Dec 2021 16:53:32: 53000000 INFO @ Fri, 10 Dec 2021 16:53:36: 56000000 INFO @ Fri, 10 Dec 2021 16:53:41: 65000000 INFO @ Fri, 10 Dec 2021 16:53:42: 54000000 INFO @ Fri, 10 Dec 2021 16:53:45: 57000000 INFO @ Fri, 10 Dec 2021 16:53:51: 66000000 INFO @ Fri, 10 Dec 2021 16:53:53: 55000000 INFO @ Fri, 10 Dec 2021 16:53:54: 58000000 INFO @ Fri, 10 Dec 2021 16:54:00: 67000000 INFO @ Fri, 10 Dec 2021 16:54:03: 59000000 INFO @ Fri, 10 Dec 2021 16:54:03: 56000000 INFO @ Fri, 10 Dec 2021 16:54:09: 68000000 INFO @ Fri, 10 Dec 2021 16:54:12: 60000000 INFO @ Fri, 10 Dec 2021 16:54:14: 57000000 INFO @ Fri, 10 Dec 2021 16:54:18: 69000000 INFO @ Fri, 10 Dec 2021 16:54:22: 61000000 INFO @ Fri, 10 Dec 2021 16:54:24: 58000000 INFO @ Fri, 10 Dec 2021 16:54:28: 70000000 INFO @ Fri, 10 Dec 2021 16:54:31: 62000000 INFO @ Fri, 10 Dec 2021 16:54:35: 59000000 INFO @ Fri, 10 Dec 2021 16:54:37: 71000000 INFO @ Fri, 10 Dec 2021 16:54:41: 63000000 INFO @ Fri, 10 Dec 2021 16:54:45: 60000000 INFO @ Fri, 10 Dec 2021 16:54:46: 72000000 INFO @ Fri, 10 Dec 2021 16:54:50: 64000000 INFO @ Fri, 10 Dec 2021 16:54:55: 61000000 INFO @ Fri, 10 Dec 2021 16:54:56: 73000000 INFO @ Fri, 10 Dec 2021 16:55:00: 65000000 INFO @ Fri, 10 Dec 2021 16:55:05: 74000000 INFO @ Fri, 10 Dec 2021 16:55:06: 62000000 INFO @ Fri, 10 Dec 2021 16:55:09: 66000000 INFO @ Fri, 10 Dec 2021 16:55:14: 75000000 INFO @ Fri, 10 Dec 2021 16:55:16: 63000000 INFO @ Fri, 10 Dec 2021 16:55:18: 67000000 INFO @ Fri, 10 Dec 2021 16:55:24: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 16:55:24: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 16:55:24: #1 total tags in treatment: 29986901 INFO @ Fri, 10 Dec 2021 16:55:24: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:55:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:55:24: #1 tags after filtering in treatment: 21589489 INFO @ Fri, 10 Dec 2021 16:55:24: #1 Redundant rate of treatment: 0.28 INFO @ Fri, 10 Dec 2021 16:55:24: #1 finished! INFO @ Fri, 10 Dec 2021 16:55:24: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:55:24: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:55:26: #2 number of paired peaks: 1276 INFO @ Fri, 10 Dec 2021 16:55:26: start model_add_line... INFO @ Fri, 10 Dec 2021 16:55:26: 64000000 INFO @ Fri, 10 Dec 2021 16:55:26: start X-correlation... INFO @ Fri, 10 Dec 2021 16:55:26: end of X-cor INFO @ Fri, 10 Dec 2021 16:55:26: #2 finished! INFO @ Fri, 10 Dec 2021 16:55:26: #2 predicted fragment length is 111 bps INFO @ Fri, 10 Dec 2021 16:55:26: #2 alternative fragment length(s) may be 111 bps INFO @ Fri, 10 Dec 2021 16:55:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.05_model.r WARNING @ Fri, 10 Dec 2021 16:55:26: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:55:26: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Fri, 10 Dec 2021 16:55:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:55:26: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:55:26: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:55:28: 68000000 INFO @ Fri, 10 Dec 2021 16:55:36: 65000000 INFO @ Fri, 10 Dec 2021 16:55:37: 69000000 INFO @ Fri, 10 Dec 2021 16:55:46: 70000000 INFO @ Fri, 10 Dec 2021 16:55:46: 66000000 INFO @ Fri, 10 Dec 2021 16:55:55: 71000000 INFO @ Fri, 10 Dec 2021 16:55:57: 67000000 INFO @ Fri, 10 Dec 2021 16:56:04: 72000000 INFO @ Fri, 10 Dec 2021 16:56:06: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:56:08: 68000000 INFO @ Fri, 10 Dec 2021 16:56:13: 73000000 INFO @ Fri, 10 Dec 2021 16:56:19: 69000000 INFO @ Fri, 10 Dec 2021 16:56:22: 74000000 INFO @ Fri, 10 Dec 2021 16:56:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.05_peaks.xls INFO @ Fri, 10 Dec 2021 16:56:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:56:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.05_summits.bed INFO @ Fri, 10 Dec 2021 16:56:28: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (13785 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 16:56:29: 70000000 INFO @ Fri, 10 Dec 2021 16:56:31: 75000000 INFO @ Fri, 10 Dec 2021 16:56:40: 71000000 INFO @ Fri, 10 Dec 2021 16:56:40: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 16:56:40: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 16:56:40: #1 total tags in treatment: 29986901 INFO @ Fri, 10 Dec 2021 16:56:40: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:56:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:56:41: #1 tags after filtering in treatment: 21589489 INFO @ Fri, 10 Dec 2021 16:56:41: #1 Redundant rate of treatment: 0.28 INFO @ Fri, 10 Dec 2021 16:56:41: #1 finished! INFO @ Fri, 10 Dec 2021 16:56:41: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:56:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:56:42: #2 number of paired peaks: 1276 INFO @ Fri, 10 Dec 2021 16:56:42: start model_add_line... INFO @ Fri, 10 Dec 2021 16:56:42: start X-correlation... INFO @ Fri, 10 Dec 2021 16:56:42: end of X-cor INFO @ Fri, 10 Dec 2021 16:56:42: #2 finished! INFO @ Fri, 10 Dec 2021 16:56:42: #2 predicted fragment length is 111 bps INFO @ Fri, 10 Dec 2021 16:56:42: #2 alternative fragment length(s) may be 111 bps INFO @ Fri, 10 Dec 2021 16:56:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.20_model.r WARNING @ Fri, 10 Dec 2021 16:56:42: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:56:42: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Fri, 10 Dec 2021 16:56:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:56:42: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:56:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:56:49: 72000000 INFO @ Fri, 10 Dec 2021 16:56:58: 73000000 INFO @ Fri, 10 Dec 2021 16:57:07: 74000000 INFO @ Fri, 10 Dec 2021 16:57:16: 75000000 INFO @ Fri, 10 Dec 2021 16:57:25: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:57:26: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 16:57:26: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 16:57:26: #1 total tags in treatment: 29986901 INFO @ Fri, 10 Dec 2021 16:57:26: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:57:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:57:26: #1 tags after filtering in treatment: 21589489 INFO @ Fri, 10 Dec 2021 16:57:26: #1 Redundant rate of treatment: 0.28 INFO @ Fri, 10 Dec 2021 16:57:26: #1 finished! INFO @ Fri, 10 Dec 2021 16:57:26: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:57:26: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:57:28: #2 number of paired peaks: 1276 INFO @ Fri, 10 Dec 2021 16:57:28: start model_add_line... INFO @ Fri, 10 Dec 2021 16:57:28: start X-correlation... INFO @ Fri, 10 Dec 2021 16:57:28: end of X-cor INFO @ Fri, 10 Dec 2021 16:57:28: #2 finished! INFO @ Fri, 10 Dec 2021 16:57:28: #2 predicted fragment length is 111 bps INFO @ Fri, 10 Dec 2021 16:57:28: #2 alternative fragment length(s) may be 111 bps INFO @ Fri, 10 Dec 2021 16:57:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.10_model.r WARNING @ Fri, 10 Dec 2021 16:57:28: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:57:28: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Fri, 10 Dec 2021 16:57:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:57:28: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:57:28: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:57:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.20_peaks.xls INFO @ Fri, 10 Dec 2021 16:57:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:57:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.20_summits.bed INFO @ Fri, 10 Dec 2021 16:57:47: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (5929 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 16:58:07: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:58:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.10_peaks.xls INFO @ Fri, 10 Dec 2021 16:58:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:58:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978810/ERX3978810.10_summits.bed INFO @ Fri, 10 Dec 2021 16:58:28: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10230 records, 4 fields): 11 millis CompletedMACS2peakCalling