Job ID = 14167764 SRX = ERX3978804 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28685055 spots for ERR3975842/ERR3975842.sra Written 28685055 spots for ERR3975842/ERR3975842.sra Read 33355754 spots for ERR3975881/ERR3975881.sra Written 33355754 spots for ERR3975881/ERR3975881.sra fastq に変換しました。 bowtie でマッピング中... Your job 14168895 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:01:56 62040809 reads; of these: 62040809 (100.00%) were paired; of these: 20900502 (33.69%) aligned concordantly 0 times 20518133 (33.07%) aligned concordantly exactly 1 time 20622174 (33.24%) aligned concordantly >1 times ---- 20900502 pairs aligned concordantly 0 times; of these: 4383404 (20.97%) aligned discordantly 1 time ---- 16517098 pairs aligned 0 times concordantly or discordantly; of these: 33034196 mates make up the pairs; of these: 22537330 (68.22%) aligned 0 times 1034821 (3.13%) aligned exactly 1 time 9462045 (28.64%) aligned >1 times 81.84% overall alignment rate Time searching: 02:01:56 Overall time: 02:01:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 60 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 17360019 / 44937345 = 0.3863 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 15:59:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 15:59:55: #1 read tag files... INFO @ Fri, 10 Dec 2021 15:59:55: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:00:04: 1000000 INFO @ Fri, 10 Dec 2021 16:00:12: 2000000 INFO @ Fri, 10 Dec 2021 16:00:20: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:00:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:00:25: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:00:25: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:00:28: 4000000 INFO @ Fri, 10 Dec 2021 16:00:33: 1000000 INFO @ Fri, 10 Dec 2021 16:00:37: 5000000 INFO @ Fri, 10 Dec 2021 16:00:41: 2000000 INFO @ Fri, 10 Dec 2021 16:00:46: 6000000 INFO @ Fri, 10 Dec 2021 16:00:49: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 16:00:54: 7000000 INFO @ Fri, 10 Dec 2021 16:00:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 16:00:55: #1 read tag files... INFO @ Fri, 10 Dec 2021 16:00:55: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 16:00:57: 4000000 INFO @ Fri, 10 Dec 2021 16:01:03: 8000000 INFO @ Fri, 10 Dec 2021 16:01:04: 1000000 INFO @ Fri, 10 Dec 2021 16:01:06: 5000000 INFO @ Fri, 10 Dec 2021 16:01:12: 9000000 INFO @ Fri, 10 Dec 2021 16:01:12: 2000000 INFO @ Fri, 10 Dec 2021 16:01:14: 6000000 INFO @ Fri, 10 Dec 2021 16:01:21: 3000000 INFO @ Fri, 10 Dec 2021 16:01:21: 10000000 INFO @ Fri, 10 Dec 2021 16:01:22: 7000000 INFO @ Fri, 10 Dec 2021 16:01:29: 4000000 INFO @ Fri, 10 Dec 2021 16:01:29: 11000000 INFO @ Fri, 10 Dec 2021 16:01:31: 8000000 INFO @ Fri, 10 Dec 2021 16:01:37: 5000000 INFO @ Fri, 10 Dec 2021 16:01:38: 12000000 INFO @ Fri, 10 Dec 2021 16:01:39: 9000000 INFO @ Fri, 10 Dec 2021 16:01:46: 6000000 INFO @ Fri, 10 Dec 2021 16:01:47: 13000000 INFO @ Fri, 10 Dec 2021 16:01:47: 10000000 INFO @ Fri, 10 Dec 2021 16:01:54: 7000000 INFO @ Fri, 10 Dec 2021 16:01:56: 11000000 INFO @ Fri, 10 Dec 2021 16:01:56: 14000000 INFO @ Fri, 10 Dec 2021 16:02:02: 8000000 INFO @ Fri, 10 Dec 2021 16:02:04: 12000000 INFO @ Fri, 10 Dec 2021 16:02:05: 15000000 INFO @ Fri, 10 Dec 2021 16:02:11: 9000000 INFO @ Fri, 10 Dec 2021 16:02:12: 13000000 INFO @ Fri, 10 Dec 2021 16:02:13: 16000000 INFO @ Fri, 10 Dec 2021 16:02:19: 10000000 INFO @ Fri, 10 Dec 2021 16:02:21: 14000000 INFO @ Fri, 10 Dec 2021 16:02:22: 17000000 INFO @ Fri, 10 Dec 2021 16:02:27: 11000000 INFO @ Fri, 10 Dec 2021 16:02:29: 15000000 INFO @ Fri, 10 Dec 2021 16:02:31: 18000000 INFO @ Fri, 10 Dec 2021 16:02:36: 12000000 INFO @ Fri, 10 Dec 2021 16:02:37: 16000000 INFO @ Fri, 10 Dec 2021 16:02:40: 19000000 INFO @ Fri, 10 Dec 2021 16:02:44: 13000000 INFO @ Fri, 10 Dec 2021 16:02:46: 17000000 INFO @ Fri, 10 Dec 2021 16:02:49: 20000000 INFO @ Fri, 10 Dec 2021 16:02:52: 14000000 INFO @ Fri, 10 Dec 2021 16:02:54: 18000000 INFO @ Fri, 10 Dec 2021 16:02:57: 21000000 INFO @ Fri, 10 Dec 2021 16:03:01: 15000000 INFO @ Fri, 10 Dec 2021 16:03:02: 19000000 INFO @ Fri, 10 Dec 2021 16:03:06: 22000000 INFO @ Fri, 10 Dec 2021 16:03:09: 16000000 INFO @ Fri, 10 Dec 2021 16:03:11: 20000000 INFO @ Fri, 10 Dec 2021 16:03:15: 23000000 INFO @ Fri, 10 Dec 2021 16:03:17: 17000000 INFO @ Fri, 10 Dec 2021 16:03:19: 21000000 INFO @ Fri, 10 Dec 2021 16:03:24: 24000000 INFO @ Fri, 10 Dec 2021 16:03:26: 18000000 INFO @ Fri, 10 Dec 2021 16:03:27: 22000000 INFO @ Fri, 10 Dec 2021 16:03:33: 25000000 INFO @ Fri, 10 Dec 2021 16:03:34: 19000000 INFO @ Fri, 10 Dec 2021 16:03:36: 23000000 INFO @ Fri, 10 Dec 2021 16:03:42: 26000000 INFO @ Fri, 10 Dec 2021 16:03:42: 20000000 INFO @ Fri, 10 Dec 2021 16:03:44: 24000000 INFO @ Fri, 10 Dec 2021 16:03:51: 27000000 INFO @ Fri, 10 Dec 2021 16:03:51: 21000000 INFO @ Fri, 10 Dec 2021 16:03:52: 25000000 INFO @ Fri, 10 Dec 2021 16:03:59: 22000000 INFO @ Fri, 10 Dec 2021 16:03:59: 28000000 INFO @ Fri, 10 Dec 2021 16:04:01: 26000000 INFO @ Fri, 10 Dec 2021 16:04:07: 23000000 INFO @ Fri, 10 Dec 2021 16:04:08: 29000000 INFO @ Fri, 10 Dec 2021 16:04:09: 27000000 INFO @ Fri, 10 Dec 2021 16:04:16: 24000000 INFO @ Fri, 10 Dec 2021 16:04:17: 30000000 INFO @ Fri, 10 Dec 2021 16:04:17: 28000000 INFO @ Fri, 10 Dec 2021 16:04:24: 25000000 INFO @ Fri, 10 Dec 2021 16:04:26: 29000000 INFO @ Fri, 10 Dec 2021 16:04:26: 31000000 INFO @ Fri, 10 Dec 2021 16:04:32: 26000000 INFO @ Fri, 10 Dec 2021 16:04:34: 30000000 INFO @ Fri, 10 Dec 2021 16:04:35: 32000000 INFO @ Fri, 10 Dec 2021 16:04:41: 27000000 INFO @ Fri, 10 Dec 2021 16:04:42: 31000000 INFO @ Fri, 10 Dec 2021 16:04:44: 33000000 INFO @ Fri, 10 Dec 2021 16:04:49: 28000000 INFO @ Fri, 10 Dec 2021 16:04:51: 32000000 INFO @ Fri, 10 Dec 2021 16:04:52: 34000000 INFO @ Fri, 10 Dec 2021 16:04:57: 29000000 INFO @ Fri, 10 Dec 2021 16:04:59: 33000000 INFO @ Fri, 10 Dec 2021 16:05:01: 35000000 INFO @ Fri, 10 Dec 2021 16:05:06: 30000000 INFO @ Fri, 10 Dec 2021 16:05:07: 34000000 INFO @ Fri, 10 Dec 2021 16:05:11: 36000000 INFO @ Fri, 10 Dec 2021 16:05:14: 31000000 INFO @ Fri, 10 Dec 2021 16:05:15: 35000000 INFO @ Fri, 10 Dec 2021 16:05:19: 37000000 INFO @ Fri, 10 Dec 2021 16:05:22: 32000000 INFO @ Fri, 10 Dec 2021 16:05:24: 36000000 INFO @ Fri, 10 Dec 2021 16:05:28: 38000000 INFO @ Fri, 10 Dec 2021 16:05:30: 33000000 INFO @ Fri, 10 Dec 2021 16:05:32: 37000000 INFO @ Fri, 10 Dec 2021 16:05:37: 39000000 INFO @ Fri, 10 Dec 2021 16:05:39: 34000000 INFO @ Fri, 10 Dec 2021 16:05:40: 38000000 INFO @ Fri, 10 Dec 2021 16:05:45: 40000000 INFO @ Fri, 10 Dec 2021 16:05:47: 35000000 INFO @ Fri, 10 Dec 2021 16:05:48: 39000000 INFO @ Fri, 10 Dec 2021 16:05:54: 41000000 INFO @ Fri, 10 Dec 2021 16:05:55: 36000000 INFO @ Fri, 10 Dec 2021 16:05:56: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 16:06:02: 42000000 INFO @ Fri, 10 Dec 2021 16:06:03: 37000000 INFO @ Fri, 10 Dec 2021 16:06:04: 41000000 INFO @ Fri, 10 Dec 2021 16:06:11: 43000000 INFO @ Fri, 10 Dec 2021 16:06:11: 38000000 INFO @ Fri, 10 Dec 2021 16:06:12: 42000000 INFO @ Fri, 10 Dec 2021 16:06:19: 39000000 INFO @ Fri, 10 Dec 2021 16:06:19: 44000000 INFO @ Fri, 10 Dec 2021 16:06:19: 43000000 INFO @ Fri, 10 Dec 2021 16:06:27: 40000000 INFO @ Fri, 10 Dec 2021 16:06:28: 44000000 INFO @ Fri, 10 Dec 2021 16:06:28: 45000000 INFO @ Fri, 10 Dec 2021 16:06:35: 41000000 INFO @ Fri, 10 Dec 2021 16:06:36: 45000000 INFO @ Fri, 10 Dec 2021 16:06:36: 46000000 INFO @ Fri, 10 Dec 2021 16:06:43: 42000000 INFO @ Fri, 10 Dec 2021 16:06:44: 46000000 INFO @ Fri, 10 Dec 2021 16:06:45: 47000000 INFO @ Fri, 10 Dec 2021 16:06:51: 43000000 INFO @ Fri, 10 Dec 2021 16:06:52: 47000000 INFO @ Fri, 10 Dec 2021 16:06:54: 48000000 INFO @ Fri, 10 Dec 2021 16:06:59: 44000000 INFO @ Fri, 10 Dec 2021 16:07:00: 48000000 INFO @ Fri, 10 Dec 2021 16:07:02: 49000000 INFO @ Fri, 10 Dec 2021 16:07:07: 45000000 INFO @ Fri, 10 Dec 2021 16:07:08: 49000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 16:07:11: 50000000 INFO @ Fri, 10 Dec 2021 16:07:15: 46000000 INFO @ Fri, 10 Dec 2021 16:07:16: 50000000 INFO @ Fri, 10 Dec 2021 16:07:19: 51000000 INFO @ Fri, 10 Dec 2021 16:07:24: 51000000 INFO @ Fri, 10 Dec 2021 16:07:24: 47000000 INFO @ Fri, 10 Dec 2021 16:07:28: 52000000 INFO @ Fri, 10 Dec 2021 16:07:32: 52000000 INFO @ Fri, 10 Dec 2021 16:07:32: 48000000 INFO @ Fri, 10 Dec 2021 16:07:36: 53000000 INFO @ Fri, 10 Dec 2021 16:07:40: 53000000 INFO @ Fri, 10 Dec 2021 16:07:40: 49000000 INFO @ Fri, 10 Dec 2021 16:07:45: 54000000 INFO @ Fri, 10 Dec 2021 16:07:48: 50000000 INFO @ Fri, 10 Dec 2021 16:07:48: 54000000 INFO @ Fri, 10 Dec 2021 16:07:54: 55000000 INFO @ Fri, 10 Dec 2021 16:07:56: 51000000 INFO @ Fri, 10 Dec 2021 16:07:56: 55000000 INFO @ Fri, 10 Dec 2021 16:08:03: 56000000 INFO @ Fri, 10 Dec 2021 16:08:03: 52000000 INFO @ Fri, 10 Dec 2021 16:08:04: 56000000 INFO @ Fri, 10 Dec 2021 16:08:11: 53000000 INFO @ Fri, 10 Dec 2021 16:08:12: 57000000 INFO @ Fri, 10 Dec 2021 16:08:13: 57000000 INFO @ Fri, 10 Dec 2021 16:08:20: 54000000 INFO @ Fri, 10 Dec 2021 16:08:20: 58000000 INFO @ Fri, 10 Dec 2021 16:08:21: 58000000 INFO @ Fri, 10 Dec 2021 16:08:28: 55000000 INFO @ Fri, 10 Dec 2021 16:08:29: 59000000 INFO @ Fri, 10 Dec 2021 16:08:30: 59000000 INFO @ Fri, 10 Dec 2021 16:08:36: 56000000 INFO @ Fri, 10 Dec 2021 16:08:38: 60000000 INFO @ Fri, 10 Dec 2021 16:08:39: 60000000 INFO @ Fri, 10 Dec 2021 16:08:44: 57000000 INFO @ Fri, 10 Dec 2021 16:08:47: 61000000 INFO @ Fri, 10 Dec 2021 16:08:48: 61000000 INFO @ Fri, 10 Dec 2021 16:08:52: 58000000 INFO @ Fri, 10 Dec 2021 16:08:56: 62000000 INFO @ Fri, 10 Dec 2021 16:08:56: 62000000 INFO @ Fri, 10 Dec 2021 16:09:00: 59000000 INFO @ Fri, 10 Dec 2021 16:09:05: 63000000 INFO @ Fri, 10 Dec 2021 16:09:05: 63000000 INFO @ Fri, 10 Dec 2021 16:09:09: 60000000 INFO @ Fri, 10 Dec 2021 16:09:14: 64000000 INFO @ Fri, 10 Dec 2021 16:09:14: 64000000 INFO @ Fri, 10 Dec 2021 16:09:17: 61000000 INFO @ Fri, 10 Dec 2021 16:09:23: 65000000 INFO @ Fri, 10 Dec 2021 16:09:24: 65000000 INFO @ Fri, 10 Dec 2021 16:09:25: 62000000 INFO @ Fri, 10 Dec 2021 16:09:33: 63000000 INFO @ Fri, 10 Dec 2021 16:09:33: 66000000 INFO @ Fri, 10 Dec 2021 16:09:33: 66000000 INFO @ Fri, 10 Dec 2021 16:09:41: 64000000 INFO @ Fri, 10 Dec 2021 16:09:42: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 16:09:42: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 16:09:42: #1 total tags in treatment: 24250107 INFO @ Fri, 10 Dec 2021 16:09:42: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:09:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:09:42: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 16:09:42: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 16:09:42: #1 total tags in treatment: 24250107 INFO @ Fri, 10 Dec 2021 16:09:42: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:09:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:09:42: #1 tags after filtering in treatment: 17049625 INFO @ Fri, 10 Dec 2021 16:09:42: #1 Redundant rate of treatment: 0.30 INFO @ Fri, 10 Dec 2021 16:09:42: #1 finished! INFO @ Fri, 10 Dec 2021 16:09:42: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:09:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:09:42: #1 tags after filtering in treatment: 17049625 INFO @ Fri, 10 Dec 2021 16:09:42: #1 Redundant rate of treatment: 0.30 INFO @ Fri, 10 Dec 2021 16:09:42: #1 finished! INFO @ Fri, 10 Dec 2021 16:09:42: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:09:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:09:43: #2 number of paired peaks: 1670 INFO @ Fri, 10 Dec 2021 16:09:43: start model_add_line... INFO @ Fri, 10 Dec 2021 16:09:43: #2 number of paired peaks: 1670 INFO @ Fri, 10 Dec 2021 16:09:43: start model_add_line... INFO @ Fri, 10 Dec 2021 16:09:43: start X-correlation... INFO @ Fri, 10 Dec 2021 16:09:43: end of X-cor INFO @ Fri, 10 Dec 2021 16:09:43: #2 finished! INFO @ Fri, 10 Dec 2021 16:09:43: #2 predicted fragment length is 130 bps INFO @ Fri, 10 Dec 2021 16:09:43: #2 alternative fragment length(s) may be 130 bps INFO @ Fri, 10 Dec 2021 16:09:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.05_model.r WARNING @ Fri, 10 Dec 2021 16:09:43: #2 Since the d (130) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:09:43: #2 You may need to consider one of the other alternative d(s): 130 WARNING @ Fri, 10 Dec 2021 16:09:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:09:43: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:09:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:09:44: start X-correlation... INFO @ Fri, 10 Dec 2021 16:09:44: end of X-cor INFO @ Fri, 10 Dec 2021 16:09:44: #2 finished! INFO @ Fri, 10 Dec 2021 16:09:44: #2 predicted fragment length is 130 bps INFO @ Fri, 10 Dec 2021 16:09:44: #2 alternative fragment length(s) may be 130 bps INFO @ Fri, 10 Dec 2021 16:09:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.10_model.r WARNING @ Fri, 10 Dec 2021 16:09:44: #2 Since the d (130) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:09:44: #2 You may need to consider one of the other alternative d(s): 130 WARNING @ Fri, 10 Dec 2021 16:09:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:09:44: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:09:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:09:48: 65000000 INFO @ Fri, 10 Dec 2021 16:09:56: 66000000 INFO @ Fri, 10 Dec 2021 16:10:02: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 16:10:02: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 16:10:02: #1 total tags in treatment: 24250107 INFO @ Fri, 10 Dec 2021 16:10:02: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 16:10:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 16:10:02: #1 tags after filtering in treatment: 17049625 INFO @ Fri, 10 Dec 2021 16:10:02: #1 Redundant rate of treatment: 0.30 INFO @ Fri, 10 Dec 2021 16:10:02: #1 finished! INFO @ Fri, 10 Dec 2021 16:10:02: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 16:10:02: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 16:10:04: #2 number of paired peaks: 1670 INFO @ Fri, 10 Dec 2021 16:10:04: start model_add_line... INFO @ Fri, 10 Dec 2021 16:10:04: start X-correlation... INFO @ Fri, 10 Dec 2021 16:10:04: end of X-cor INFO @ Fri, 10 Dec 2021 16:10:04: #2 finished! INFO @ Fri, 10 Dec 2021 16:10:04: #2 predicted fragment length is 130 bps INFO @ Fri, 10 Dec 2021 16:10:04: #2 alternative fragment length(s) may be 130 bps INFO @ Fri, 10 Dec 2021 16:10:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.20_model.r WARNING @ Fri, 10 Dec 2021 16:10:04: #2 Since the d (130) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 16:10:04: #2 You may need to consider one of the other alternative d(s): 130 WARNING @ Fri, 10 Dec 2021 16:10:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 16:10:04: #3 Call peaks... INFO @ Fri, 10 Dec 2021 16:10:04: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 16:10:16: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:10:17: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:10:32: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.10_peaks.xls INFO @ Fri, 10 Dec 2021 16:10:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:10:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.10_summits.bed INFO @ Fri, 10 Dec 2021 16:10:32: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10096 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 16:10:34: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.05_peaks.xls INFO @ Fri, 10 Dec 2021 16:10:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:10:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.05_summits.bed INFO @ Fri, 10 Dec 2021 16:10:34: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (13979 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 16:10:36: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 16:10:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.20_peaks.xls INFO @ Fri, 10 Dec 2021 16:10:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 16:10:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978804/ERX3978804.20_summits.bed INFO @ Fri, 10 Dec 2021 16:10:52: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (5776 records, 4 fields): 7 millis CompletedMACS2peakCalling