Job ID = 14167530 SRX = ERX3978800 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 24580854 spots for ERR3975833/ERR3975833.sra Written 24580854 spots for ERR3975833/ERR3975833.sra Read 26841954 spots for ERR3975864/ERR3975864.sra Written 26841954 spots for ERR3975864/ERR3975864.sra fastq に変換しました。 bowtie でマッピング中... Your job 14168548 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:35:18 51422808 reads; of these: 51422808 (100.00%) were paired; of these: 13607270 (26.46%) aligned concordantly 0 times 30362032 (59.04%) aligned concordantly exactly 1 time 7453506 (14.49%) aligned concordantly >1 times ---- 13607270 pairs aligned concordantly 0 times; of these: 6883991 (50.59%) aligned discordantly 1 time ---- 6723279 pairs aligned 0 times concordantly or discordantly; of these: 13446558 mates make up the pairs; of these: 9363683 (69.64%) aligned 0 times 1089644 (8.10%) aligned exactly 1 time 2993231 (22.26%) aligned >1 times 90.90% overall alignment rate Time searching: 01:35:18 Overall time: 01:35:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5823573 / 44153161 = 0.1319 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 14:54:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 14:54:43: #1 read tag files... INFO @ Fri, 10 Dec 2021 14:54:43: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 14:54:49: 1000000 INFO @ Fri, 10 Dec 2021 14:54:55: 2000000 INFO @ Fri, 10 Dec 2021 14:55:01: 3000000 INFO @ Fri, 10 Dec 2021 14:55:07: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 14:55:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 14:55:12: #1 read tag files... INFO @ Fri, 10 Dec 2021 14:55:12: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 14:55:13: 5000000 INFO @ Fri, 10 Dec 2021 14:55:19: 1000000 INFO @ Fri, 10 Dec 2021 14:55:20: 6000000 INFO @ Fri, 10 Dec 2021 14:55:26: 2000000 INFO @ Fri, 10 Dec 2021 14:55:27: 7000000 INFO @ Fri, 10 Dec 2021 14:55:33: 3000000 INFO @ Fri, 10 Dec 2021 14:55:33: 8000000 INFO @ Fri, 10 Dec 2021 14:55:40: 9000000 INFO @ Fri, 10 Dec 2021 14:55:40: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 14:55:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 14:55:43: #1 read tag files... INFO @ Fri, 10 Dec 2021 14:55:43: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 14:55:46: 10000000 INFO @ Fri, 10 Dec 2021 14:55:47: 5000000 INFO @ Fri, 10 Dec 2021 14:55:49: 1000000 INFO @ Fri, 10 Dec 2021 14:55:53: 11000000 INFO @ Fri, 10 Dec 2021 14:55:54: 6000000 INFO @ Fri, 10 Dec 2021 14:55:54: 2000000 INFO @ Fri, 10 Dec 2021 14:55:59: 12000000 INFO @ Fri, 10 Dec 2021 14:56:00: 3000000 INFO @ Fri, 10 Dec 2021 14:56:01: 7000000 INFO @ Fri, 10 Dec 2021 14:56:06: 13000000 INFO @ Fri, 10 Dec 2021 14:56:06: 4000000 INFO @ Fri, 10 Dec 2021 14:56:08: 8000000 INFO @ Fri, 10 Dec 2021 14:56:12: 5000000 INFO @ Fri, 10 Dec 2021 14:56:13: 14000000 INFO @ Fri, 10 Dec 2021 14:56:15: 9000000 INFO @ Fri, 10 Dec 2021 14:56:18: 6000000 INFO @ Fri, 10 Dec 2021 14:56:20: 15000000 INFO @ Fri, 10 Dec 2021 14:56:22: 10000000 INFO @ Fri, 10 Dec 2021 14:56:24: 7000000 INFO @ Fri, 10 Dec 2021 14:56:27: 16000000 INFO @ Fri, 10 Dec 2021 14:56:29: 11000000 INFO @ Fri, 10 Dec 2021 14:56:29: 8000000 INFO @ Fri, 10 Dec 2021 14:56:33: 17000000 INFO @ Fri, 10 Dec 2021 14:56:35: 9000000 INFO @ Fri, 10 Dec 2021 14:56:36: 12000000 INFO @ Fri, 10 Dec 2021 14:56:40: 18000000 INFO @ Fri, 10 Dec 2021 14:56:41: 10000000 INFO @ Fri, 10 Dec 2021 14:56:43: 13000000 INFO @ Fri, 10 Dec 2021 14:56:46: 19000000 INFO @ Fri, 10 Dec 2021 14:56:47: 11000000 INFO @ Fri, 10 Dec 2021 14:56:51: 14000000 INFO @ Fri, 10 Dec 2021 14:56:52: 20000000 INFO @ Fri, 10 Dec 2021 14:56:53: 12000000 INFO @ Fri, 10 Dec 2021 14:56:58: 15000000 INFO @ Fri, 10 Dec 2021 14:56:58: 21000000 INFO @ Fri, 10 Dec 2021 14:56:59: 13000000 INFO @ Fri, 10 Dec 2021 14:57:04: 16000000 INFO @ Fri, 10 Dec 2021 14:57:05: 14000000 INFO @ Fri, 10 Dec 2021 14:57:05: 22000000 INFO @ Fri, 10 Dec 2021 14:57:10: 15000000 INFO @ Fri, 10 Dec 2021 14:57:11: 23000000 INFO @ Fri, 10 Dec 2021 14:57:11: 17000000 INFO @ Fri, 10 Dec 2021 14:57:16: 16000000 INFO @ Fri, 10 Dec 2021 14:57:18: 24000000 INFO @ Fri, 10 Dec 2021 14:57:18: 18000000 INFO @ Fri, 10 Dec 2021 14:57:22: 17000000 INFO @ Fri, 10 Dec 2021 14:57:24: 25000000 INFO @ Fri, 10 Dec 2021 14:57:25: 19000000 INFO @ Fri, 10 Dec 2021 14:57:28: 18000000 INFO @ Fri, 10 Dec 2021 14:57:31: 26000000 INFO @ Fri, 10 Dec 2021 14:57:32: 20000000 INFO @ Fri, 10 Dec 2021 14:57:33: 19000000 INFO @ Fri, 10 Dec 2021 14:57:38: 27000000 INFO @ Fri, 10 Dec 2021 14:57:39: 21000000 INFO @ Fri, 10 Dec 2021 14:57:39: 20000000 INFO @ Fri, 10 Dec 2021 14:57:45: 21000000 INFO @ Fri, 10 Dec 2021 14:57:45: 22000000 INFO @ Fri, 10 Dec 2021 14:57:46: 28000000 INFO @ Fri, 10 Dec 2021 14:57:50: 22000000 INFO @ Fri, 10 Dec 2021 14:57:52: 23000000 INFO @ Fri, 10 Dec 2021 14:57:53: 29000000 INFO @ Fri, 10 Dec 2021 14:57:56: 23000000 INFO @ Fri, 10 Dec 2021 14:58:00: 24000000 INFO @ Fri, 10 Dec 2021 14:58:00: 30000000 INFO @ Fri, 10 Dec 2021 14:58:02: 24000000 INFO @ Fri, 10 Dec 2021 14:58:07: 25000000 INFO @ Fri, 10 Dec 2021 14:58:08: 31000000 INFO @ Fri, 10 Dec 2021 14:58:08: 25000000 INFO @ Fri, 10 Dec 2021 14:58:14: 26000000 INFO @ Fri, 10 Dec 2021 14:58:14: 26000000 INFO @ Fri, 10 Dec 2021 14:58:15: 32000000 INFO @ Fri, 10 Dec 2021 14:58:20: 27000000 INFO @ Fri, 10 Dec 2021 14:58:22: 27000000 INFO @ Fri, 10 Dec 2021 14:58:22: 33000000 INFO @ Fri, 10 Dec 2021 14:58:26: 28000000 INFO @ Fri, 10 Dec 2021 14:58:29: 34000000 INFO @ Fri, 10 Dec 2021 14:58:29: 28000000 INFO @ Fri, 10 Dec 2021 14:58:32: 29000000 INFO @ Fri, 10 Dec 2021 14:58:35: 29000000 INFO @ Fri, 10 Dec 2021 14:58:36: 35000000 INFO @ Fri, 10 Dec 2021 14:58:39: 30000000 INFO @ Fri, 10 Dec 2021 14:58:41: 30000000 INFO @ Fri, 10 Dec 2021 14:58:42: 36000000 INFO @ Fri, 10 Dec 2021 14:58:45: 31000000 INFO @ Fri, 10 Dec 2021 14:58:48: 31000000 INFO @ Fri, 10 Dec 2021 14:58:49: 37000000 INFO @ Fri, 10 Dec 2021 14:58:51: 32000000 INFO @ Fri, 10 Dec 2021 14:58:54: 32000000 INFO @ Fri, 10 Dec 2021 14:58:56: 38000000 INFO @ Fri, 10 Dec 2021 14:58:57: 33000000 INFO @ Fri, 10 Dec 2021 14:59:01: 33000000 INFO @ Fri, 10 Dec 2021 14:59:02: 39000000 INFO @ Fri, 10 Dec 2021 14:59:03: 34000000 INFO @ Fri, 10 Dec 2021 14:59:08: 34000000 INFO @ Fri, 10 Dec 2021 14:59:09: 40000000 INFO @ Fri, 10 Dec 2021 14:59:09: 35000000 INFO @ Fri, 10 Dec 2021 14:59:15: 35000000 INFO @ Fri, 10 Dec 2021 14:59:15: 41000000 INFO @ Fri, 10 Dec 2021 14:59:16: 36000000 INFO @ Fri, 10 Dec 2021 14:59:22: 37000000 INFO @ Fri, 10 Dec 2021 14:59:22: 36000000 INFO @ Fri, 10 Dec 2021 14:59:22: 42000000 INFO @ Fri, 10 Dec 2021 14:59:28: 38000000 INFO @ Fri, 10 Dec 2021 14:59:29: 43000000 INFO @ Fri, 10 Dec 2021 14:59:29: 37000000 INFO @ Fri, 10 Dec 2021 14:59:34: 39000000 INFO @ Fri, 10 Dec 2021 14:59:35: 44000000 INFO @ Fri, 10 Dec 2021 14:59:36: 38000000 INFO @ Fri, 10 Dec 2021 14:59:40: 40000000 INFO @ Fri, 10 Dec 2021 14:59:42: 45000000 INFO @ Fri, 10 Dec 2021 14:59:43: 39000000 INFO @ Fri, 10 Dec 2021 14:59:47: 41000000 INFO @ Fri, 10 Dec 2021 14:59:49: 46000000 INFO @ Fri, 10 Dec 2021 14:59:50: 40000000 INFO @ Fri, 10 Dec 2021 14:59:53: 42000000 INFO @ Fri, 10 Dec 2021 14:59:56: 47000000 INFO @ Fri, 10 Dec 2021 14:59:57: 41000000 INFO @ Fri, 10 Dec 2021 15:00:00: 43000000 INFO @ Fri, 10 Dec 2021 15:00:03: 48000000 INFO @ Fri, 10 Dec 2021 15:00:04: 42000000 INFO @ Fri, 10 Dec 2021 15:00:06: 44000000 INFO @ Fri, 10 Dec 2021 15:00:10: 49000000 INFO @ Fri, 10 Dec 2021 15:00:11: 43000000 INFO @ Fri, 10 Dec 2021 15:00:12: 45000000 INFO @ Fri, 10 Dec 2021 15:00:18: 50000000 INFO @ Fri, 10 Dec 2021 15:00:18: 44000000 INFO @ Fri, 10 Dec 2021 15:00:18: 46000000 INFO @ Fri, 10 Dec 2021 15:00:24: 47000000 INFO @ Fri, 10 Dec 2021 15:00:24: 45000000 INFO @ Fri, 10 Dec 2021 15:00:25: 51000000 INFO @ Fri, 10 Dec 2021 15:00:31: 48000000 INFO @ Fri, 10 Dec 2021 15:00:31: 46000000 INFO @ Fri, 10 Dec 2021 15:00:32: 52000000 INFO @ Fri, 10 Dec 2021 15:00:37: 49000000 INFO @ Fri, 10 Dec 2021 15:00:37: 47000000 INFO @ Fri, 10 Dec 2021 15:00:40: 53000000 INFO @ Fri, 10 Dec 2021 15:00:43: 50000000 INFO @ Fri, 10 Dec 2021 15:00:44: 48000000 INFO @ Fri, 10 Dec 2021 15:00:47: 54000000 INFO @ Fri, 10 Dec 2021 15:00:49: 51000000 INFO @ Fri, 10 Dec 2021 15:00:50: 49000000 INFO @ Fri, 10 Dec 2021 15:00:54: 55000000 INFO @ Fri, 10 Dec 2021 15:00:55: 52000000 INFO @ Fri, 10 Dec 2021 15:00:57: 50000000 INFO @ Fri, 10 Dec 2021 15:01:01: 53000000 INFO @ Fri, 10 Dec 2021 15:01:01: 56000000 INFO @ Fri, 10 Dec 2021 15:01:04: 51000000 INFO @ Fri, 10 Dec 2021 15:01:08: 54000000 INFO @ Fri, 10 Dec 2021 15:01:09: 57000000 INFO @ Fri, 10 Dec 2021 15:01:11: 52000000 INFO @ Fri, 10 Dec 2021 15:01:14: 55000000 INFO @ Fri, 10 Dec 2021 15:01:16: 58000000 INFO @ Fri, 10 Dec 2021 15:01:18: 53000000 INFO @ Fri, 10 Dec 2021 15:01:20: 56000000 INFO @ Fri, 10 Dec 2021 15:01:24: 59000000 INFO @ Fri, 10 Dec 2021 15:01:25: 54000000 INFO @ Fri, 10 Dec 2021 15:01:26: 57000000 INFO @ Fri, 10 Dec 2021 15:01:31: 60000000 INFO @ Fri, 10 Dec 2021 15:01:32: 55000000 INFO @ Fri, 10 Dec 2021 15:01:32: 58000000 INFO @ Fri, 10 Dec 2021 15:01:38: 59000000 INFO @ Fri, 10 Dec 2021 15:01:38: 61000000 INFO @ Fri, 10 Dec 2021 15:01:39: 56000000 INFO @ Fri, 10 Dec 2021 15:01:44: 60000000 INFO @ Fri, 10 Dec 2021 15:01:45: 62000000 INFO @ Fri, 10 Dec 2021 15:01:46: 57000000 INFO @ Fri, 10 Dec 2021 15:01:50: 61000000 INFO @ Fri, 10 Dec 2021 15:01:52: 63000000 INFO @ Fri, 10 Dec 2021 15:01:52: 58000000 INFO @ Fri, 10 Dec 2021 15:01:55: 62000000 INFO @ Fri, 10 Dec 2021 15:01:59: 59000000 INFO @ Fri, 10 Dec 2021 15:02:00: 64000000 INFO @ Fri, 10 Dec 2021 15:02:01: 63000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 15:02:07: 60000000 INFO @ Fri, 10 Dec 2021 15:02:07: 65000000 INFO @ Fri, 10 Dec 2021 15:02:07: 64000000 INFO @ Fri, 10 Dec 2021 15:02:13: 65000000 INFO @ Fri, 10 Dec 2021 15:02:14: 61000000 INFO @ Fri, 10 Dec 2021 15:02:14: 66000000 INFO @ Fri, 10 Dec 2021 15:02:19: 66000000 INFO @ Fri, 10 Dec 2021 15:02:21: 62000000 INFO @ Fri, 10 Dec 2021 15:02:22: 67000000 INFO @ Fri, 10 Dec 2021 15:02:25: 67000000 INFO @ Fri, 10 Dec 2021 15:02:28: 63000000 INFO @ Fri, 10 Dec 2021 15:02:29: 68000000 INFO @ Fri, 10 Dec 2021 15:02:31: 68000000 INFO @ Fri, 10 Dec 2021 15:02:35: 64000000 INFO @ Fri, 10 Dec 2021 15:02:37: 69000000 INFO @ Fri, 10 Dec 2021 15:02:38: 69000000 INFO @ Fri, 10 Dec 2021 15:02:43: 65000000 INFO @ Fri, 10 Dec 2021 15:02:44: 70000000 INFO @ Fri, 10 Dec 2021 15:02:45: 70000000 INFO @ Fri, 10 Dec 2021 15:02:50: 66000000 INFO @ Fri, 10 Dec 2021 15:02:52: 71000000 INFO @ Fri, 10 Dec 2021 15:02:52: 71000000 INFO @ Fri, 10 Dec 2021 15:02:57: 67000000 INFO @ Fri, 10 Dec 2021 15:02:59: 72000000 INFO @ Fri, 10 Dec 2021 15:03:00: 72000000 INFO @ Fri, 10 Dec 2021 15:03:04: 68000000 INFO @ Fri, 10 Dec 2021 15:03:07: 73000000 INFO @ Fri, 10 Dec 2021 15:03:07: 73000000 INFO @ Fri, 10 Dec 2021 15:03:11: 69000000 INFO @ Fri, 10 Dec 2021 15:03:14: 74000000 INFO @ Fri, 10 Dec 2021 15:03:15: 74000000 INFO @ Fri, 10 Dec 2021 15:03:18: 70000000 INFO @ Fri, 10 Dec 2021 15:03:21: 75000000 INFO @ Fri, 10 Dec 2021 15:03:22: 75000000 INFO @ Fri, 10 Dec 2021 15:03:25: 71000000 INFO @ Fri, 10 Dec 2021 15:03:28: 76000000 INFO @ Fri, 10 Dec 2021 15:03:29: 76000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 15:03:32: 72000000 INFO @ Fri, 10 Dec 2021 15:03:36: 77000000 INFO @ Fri, 10 Dec 2021 15:03:36: 77000000 INFO @ Fri, 10 Dec 2021 15:03:39: 73000000 INFO @ Fri, 10 Dec 2021 15:03:43: 78000000 INFO @ Fri, 10 Dec 2021 15:03:43: 78000000 INFO @ Fri, 10 Dec 2021 15:03:46: 74000000 INFO @ Fri, 10 Dec 2021 15:03:50: 79000000 INFO @ Fri, 10 Dec 2021 15:03:51: 79000000 INFO @ Fri, 10 Dec 2021 15:03:54: 75000000 INFO @ Fri, 10 Dec 2021 15:03:57: 80000000 INFO @ Fri, 10 Dec 2021 15:03:57: 80000000 INFO @ Fri, 10 Dec 2021 15:04:01: 76000000 INFO @ Fri, 10 Dec 2021 15:04:04: 81000000 INFO @ Fri, 10 Dec 2021 15:04:05: 81000000 INFO @ Fri, 10 Dec 2021 15:04:08: 77000000 INFO @ Fri, 10 Dec 2021 15:04:10: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 15:04:10: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 15:04:10: #1 total tags in treatment: 32493196 INFO @ Fri, 10 Dec 2021 15:04:10: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 15:04:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 15:04:11: #1 tags after filtering in treatment: 23198169 INFO @ Fri, 10 Dec 2021 15:04:11: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 15:04:11: #1 finished! INFO @ Fri, 10 Dec 2021 15:04:11: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 15:04:11: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 15:04:11: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 15:04:11: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 15:04:11: #1 total tags in treatment: 32493196 INFO @ Fri, 10 Dec 2021 15:04:11: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 15:04:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 15:04:12: #1 tags after filtering in treatment: 23198169 INFO @ Fri, 10 Dec 2021 15:04:12: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 15:04:12: #1 finished! INFO @ Fri, 10 Dec 2021 15:04:12: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 15:04:12: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 15:04:12: #2 number of paired peaks: 1151 INFO @ Fri, 10 Dec 2021 15:04:12: start model_add_line... INFO @ Fri, 10 Dec 2021 15:04:13: start X-correlation... INFO @ Fri, 10 Dec 2021 15:04:13: end of X-cor INFO @ Fri, 10 Dec 2021 15:04:13: #2 finished! INFO @ Fri, 10 Dec 2021 15:04:13: #2 predicted fragment length is 105 bps INFO @ Fri, 10 Dec 2021 15:04:13: #2 alternative fragment length(s) may be 105 bps INFO @ Fri, 10 Dec 2021 15:04:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.05_model.r WARNING @ Fri, 10 Dec 2021 15:04:13: #2 Since the d (105) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 15:04:13: #2 You may need to consider one of the other alternative d(s): 105 WARNING @ Fri, 10 Dec 2021 15:04:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 15:04:13: #3 Call peaks... INFO @ Fri, 10 Dec 2021 15:04:13: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 15:04:13: #2 number of paired peaks: 1151 INFO @ Fri, 10 Dec 2021 15:04:13: start model_add_line... INFO @ Fri, 10 Dec 2021 15:04:13: start X-correlation... INFO @ Fri, 10 Dec 2021 15:04:13: end of X-cor INFO @ Fri, 10 Dec 2021 15:04:13: #2 finished! INFO @ Fri, 10 Dec 2021 15:04:13: #2 predicted fragment length is 105 bps INFO @ Fri, 10 Dec 2021 15:04:13: #2 alternative fragment length(s) may be 105 bps INFO @ Fri, 10 Dec 2021 15:04:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.10_model.r WARNING @ Fri, 10 Dec 2021 15:04:13: #2 Since the d (105) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 15:04:13: #2 You may need to consider one of the other alternative d(s): 105 WARNING @ Fri, 10 Dec 2021 15:04:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 15:04:13: #3 Call peaks... INFO @ Fri, 10 Dec 2021 15:04:13: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 15:04:15: 78000000 INFO @ Fri, 10 Dec 2021 15:04:22: 79000000 INFO @ Fri, 10 Dec 2021 15:04:28: 80000000 INFO @ Fri, 10 Dec 2021 15:04:35: 81000000 INFO @ Fri, 10 Dec 2021 15:04:40: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 15:04:40: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 15:04:40: #1 total tags in treatment: 32493196 INFO @ Fri, 10 Dec 2021 15:04:40: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 15:04:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 15:04:41: #1 tags after filtering in treatment: 23198169 INFO @ Fri, 10 Dec 2021 15:04:41: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 15:04:41: #1 finished! INFO @ Fri, 10 Dec 2021 15:04:41: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 15:04:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 15:04:43: #2 number of paired peaks: 1151 INFO @ Fri, 10 Dec 2021 15:04:43: start model_add_line... INFO @ Fri, 10 Dec 2021 15:04:43: start X-correlation... INFO @ Fri, 10 Dec 2021 15:04:43: end of X-cor INFO @ Fri, 10 Dec 2021 15:04:43: #2 finished! INFO @ Fri, 10 Dec 2021 15:04:43: #2 predicted fragment length is 105 bps INFO @ Fri, 10 Dec 2021 15:04:43: #2 alternative fragment length(s) may be 105 bps INFO @ Fri, 10 Dec 2021 15:04:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.20_model.r WARNING @ Fri, 10 Dec 2021 15:04:43: #2 Since the d (105) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 15:04:43: #2 You may need to consider one of the other alternative d(s): 105 WARNING @ Fri, 10 Dec 2021 15:04:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 15:04:43: #3 Call peaks... INFO @ Fri, 10 Dec 2021 15:04:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 15:04:55: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 15:04:56: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 15:05:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.10_peaks.xls INFO @ Fri, 10 Dec 2021 15:05:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 15:05:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.10_summits.bed INFO @ Fri, 10 Dec 2021 15:05:17: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11596 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 15:05:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.05_peaks.xls INFO @ Fri, 10 Dec 2021 15:05:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 15:05:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.05_summits.bed INFO @ Fri, 10 Dec 2021 15:05:19: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (15043 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 15:05:27: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 15:05:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.20_peaks.xls INFO @ Fri, 10 Dec 2021 15:05:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 15:05:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978800/ERX3978800.20_summits.bed INFO @ Fri, 10 Dec 2021 15:05:49: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6818 records, 4 fields): 7 millis CompletedMACS2peakCalling