Job ID = 14169930 SRX = ERX3978799 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 26494398 spots for ERR3975831/ERR3975831.sra Written 26494398 spots for ERR3975831/ERR3975831.sra Read 24529813 spots for ERR3975838/ERR3975838.sra Written 24529813 spots for ERR3975838/ERR3975838.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170724 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:46:12 51024211 reads; of these: 51024211 (100.00%) were paired; of these: 15290933 (29.97%) aligned concordantly 0 times 26538226 (52.01%) aligned concordantly exactly 1 time 9195052 (18.02%) aligned concordantly >1 times ---- 15290933 pairs aligned concordantly 0 times; of these: 5616899 (36.73%) aligned discordantly 1 time ---- 9674034 pairs aligned 0 times concordantly or discordantly; of these: 19348068 mates make up the pairs; of these: 14810554 (76.55%) aligned 0 times 890481 (4.60%) aligned exactly 1 time 3647033 (18.85%) aligned >1 times 85.49% overall alignment rate Time searching: 01:46:12 Overall time: 01:46:12 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 18728180 / 40891810 = 0.4580 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:34:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:34:26: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:34:26: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:34:37: 1000000 INFO @ Sat, 11 Dec 2021 06:34:47: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:34:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:34:56: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:34:56: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:34:57: 3000000 INFO @ Sat, 11 Dec 2021 06:35:07: 1000000 INFO @ Sat, 11 Dec 2021 06:35:09: 4000000 INFO @ Sat, 11 Dec 2021 06:35:17: 2000000 INFO @ Sat, 11 Dec 2021 06:35:21: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:35:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:35:26: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:35:26: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:35:27: 3000000 INFO @ Sat, 11 Dec 2021 06:35:33: 6000000 INFO @ Sat, 11 Dec 2021 06:35:38: 4000000 INFO @ Sat, 11 Dec 2021 06:35:38: 1000000 INFO @ Sat, 11 Dec 2021 06:35:46: 7000000 INFO @ Sat, 11 Dec 2021 06:35:49: 5000000 INFO @ Sat, 11 Dec 2021 06:35:50: 2000000 INFO @ Sat, 11 Dec 2021 06:35:58: 8000000 INFO @ Sat, 11 Dec 2021 06:36:00: 6000000 INFO @ Sat, 11 Dec 2021 06:36:02: 3000000 INFO @ Sat, 11 Dec 2021 06:36:10: 9000000 INFO @ Sat, 11 Dec 2021 06:36:10: 7000000 INFO @ Sat, 11 Dec 2021 06:36:14: 4000000 INFO @ Sat, 11 Dec 2021 06:36:21: 8000000 INFO @ Sat, 11 Dec 2021 06:36:22: 10000000 INFO @ Sat, 11 Dec 2021 06:36:26: 5000000 INFO @ Sat, 11 Dec 2021 06:36:31: 9000000 INFO @ Sat, 11 Dec 2021 06:36:34: 11000000 INFO @ Sat, 11 Dec 2021 06:36:38: 6000000 INFO @ Sat, 11 Dec 2021 06:36:42: 10000000 INFO @ Sat, 11 Dec 2021 06:36:47: 12000000 INFO @ Sat, 11 Dec 2021 06:36:50: 7000000 INFO @ Sat, 11 Dec 2021 06:36:53: 11000000 INFO @ Sat, 11 Dec 2021 06:36:59: 13000000 INFO @ Sat, 11 Dec 2021 06:37:02: 8000000 INFO @ Sat, 11 Dec 2021 06:37:03: 12000000 INFO @ Sat, 11 Dec 2021 06:37:11: 14000000 INFO @ Sat, 11 Dec 2021 06:37:13: 9000000 INFO @ Sat, 11 Dec 2021 06:37:14: 13000000 INFO @ Sat, 11 Dec 2021 06:37:23: 15000000 INFO @ Sat, 11 Dec 2021 06:37:25: 14000000 INFO @ Sat, 11 Dec 2021 06:37:25: 10000000 INFO @ Sat, 11 Dec 2021 06:37:35: 16000000 INFO @ Sat, 11 Dec 2021 06:37:35: 15000000 INFO @ Sat, 11 Dec 2021 06:37:37: 11000000 INFO @ Sat, 11 Dec 2021 06:37:46: 16000000 INFO @ Sat, 11 Dec 2021 06:37:47: 17000000 INFO @ Sat, 11 Dec 2021 06:37:49: 12000000 INFO @ Sat, 11 Dec 2021 06:37:57: 17000000 INFO @ Sat, 11 Dec 2021 06:38:00: 18000000 INFO @ Sat, 11 Dec 2021 06:38:01: 13000000 INFO @ Sat, 11 Dec 2021 06:38:07: 18000000 INFO @ Sat, 11 Dec 2021 06:38:11: 19000000 INFO @ Sat, 11 Dec 2021 06:38:13: 14000000 INFO @ Sat, 11 Dec 2021 06:38:19: 19000000 INFO @ Sat, 11 Dec 2021 06:38:22: 20000000 INFO @ Sat, 11 Dec 2021 06:38:25: 15000000 INFO @ Sat, 11 Dec 2021 06:38:30: 20000000 INFO @ Sat, 11 Dec 2021 06:38:34: 21000000 INFO @ Sat, 11 Dec 2021 06:38:37: 16000000 INFO @ Sat, 11 Dec 2021 06:38:41: 21000000 INFO @ Sat, 11 Dec 2021 06:38:46: 22000000 INFO @ Sat, 11 Dec 2021 06:38:49: 17000000 INFO @ Sat, 11 Dec 2021 06:38:51: 22000000 INFO @ Sat, 11 Dec 2021 06:38:58: 23000000 INFO @ Sat, 11 Dec 2021 06:39:00: 18000000 INFO @ Sat, 11 Dec 2021 06:39:02: 23000000 INFO @ Sat, 11 Dec 2021 06:39:10: 24000000 INFO @ Sat, 11 Dec 2021 06:39:11: 19000000 INFO @ Sat, 11 Dec 2021 06:39:13: 24000000 INFO @ Sat, 11 Dec 2021 06:39:22: 25000000 INFO @ Sat, 11 Dec 2021 06:39:22: 20000000 INFO @ Sat, 11 Dec 2021 06:39:23: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 06:39:34: 21000000 INFO @ Sat, 11 Dec 2021 06:39:35: 26000000 INFO @ Sat, 11 Dec 2021 06:39:36: 26000000 INFO @ Sat, 11 Dec 2021 06:39:46: 22000000 INFO @ Sat, 11 Dec 2021 06:39:48: 27000000 INFO @ Sat, 11 Dec 2021 06:39:48: 27000000 INFO @ Sat, 11 Dec 2021 06:39:58: 23000000 INFO @ Sat, 11 Dec 2021 06:40:01: 28000000 INFO @ Sat, 11 Dec 2021 06:40:01: 28000000 INFO @ Sat, 11 Dec 2021 06:40:10: 24000000 INFO @ Sat, 11 Dec 2021 06:40:14: 29000000 INFO @ Sat, 11 Dec 2021 06:40:14: 29000000 INFO @ Sat, 11 Dec 2021 06:40:22: 25000000 INFO @ Sat, 11 Dec 2021 06:40:27: 30000000 INFO @ Sat, 11 Dec 2021 06:40:28: 30000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 06:40:34: 26000000 INFO @ Sat, 11 Dec 2021 06:40:41: 31000000 INFO @ Sat, 11 Dec 2021 06:40:41: 31000000 INFO @ Sat, 11 Dec 2021 06:40:46: 27000000 INFO @ Sat, 11 Dec 2021 06:40:54: 32000000 INFO @ Sat, 11 Dec 2021 06:40:54: 32000000 INFO @ Sat, 11 Dec 2021 06:40:58: 28000000 INFO @ Sat, 11 Dec 2021 06:41:08: 33000000 INFO @ Sat, 11 Dec 2021 06:41:08: 33000000 INFO @ Sat, 11 Dec 2021 06:41:10: 29000000 INFO @ Sat, 11 Dec 2021 06:41:21: 34000000 INFO @ Sat, 11 Dec 2021 06:41:22: 34000000 INFO @ Sat, 11 Dec 2021 06:41:22: 30000000 INFO @ Sat, 11 Dec 2021 06:41:32: 35000000 INFO @ Sat, 11 Dec 2021 06:41:34: 31000000 INFO @ Sat, 11 Dec 2021 06:41:34: 35000000 INFO @ Sat, 11 Dec 2021 06:41:43: 36000000 INFO @ Sat, 11 Dec 2021 06:41:47: 32000000 INFO @ Sat, 11 Dec 2021 06:41:47: 36000000 INFO @ Sat, 11 Dec 2021 06:41:53: 37000000 INFO @ Sat, 11 Dec 2021 06:41:59: 33000000 INFO @ Sat, 11 Dec 2021 06:41:59: 37000000 INFO @ Sat, 11 Dec 2021 06:42:04: 38000000 INFO @ Sat, 11 Dec 2021 06:42:11: 34000000 INFO @ Sat, 11 Dec 2021 06:42:11: 38000000 INFO @ Sat, 11 Dec 2021 06:42:15: 39000000 INFO @ Sat, 11 Dec 2021 06:42:23: 35000000 INFO @ Sat, 11 Dec 2021 06:42:23: 39000000 INFO @ Sat, 11 Dec 2021 06:42:25: 40000000 INFO @ Sat, 11 Dec 2021 06:42:35: 36000000 INFO @ Sat, 11 Dec 2021 06:42:36: 40000000 INFO @ Sat, 11 Dec 2021 06:42:36: 41000000 INFO @ Sat, 11 Dec 2021 06:42:47: 37000000 INFO @ Sat, 11 Dec 2021 06:42:47: 42000000 INFO @ Sat, 11 Dec 2021 06:42:48: 41000000 INFO @ Sat, 11 Dec 2021 06:42:57: 43000000 INFO @ Sat, 11 Dec 2021 06:42:59: 38000000 INFO @ Sat, 11 Dec 2021 06:43:00: 42000000 INFO @ Sat, 11 Dec 2021 06:43:08: 44000000 INFO @ Sat, 11 Dec 2021 06:43:11: 39000000 INFO @ Sat, 11 Dec 2021 06:43:12: 43000000 INFO @ Sat, 11 Dec 2021 06:43:19: 45000000 INFO @ Sat, 11 Dec 2021 06:43:23: 40000000 INFO @ Sat, 11 Dec 2021 06:43:24: 44000000 INFO @ Sat, 11 Dec 2021 06:43:29: 46000000 INFO @ Sat, 11 Dec 2021 06:43:35: 41000000 INFO @ Sat, 11 Dec 2021 06:43:36: 45000000 INFO @ Sat, 11 Dec 2021 06:43:40: 47000000 INFO @ Sat, 11 Dec 2021 06:43:46: 42000000 INFO @ Sat, 11 Dec 2021 06:43:49: 46000000 INFO @ Sat, 11 Dec 2021 06:43:50: 48000000 INFO @ Sat, 11 Dec 2021 06:43:58: 43000000 INFO @ Sat, 11 Dec 2021 06:44:01: 47000000 INFO @ Sat, 11 Dec 2021 06:44:01: 49000000 INFO @ Sat, 11 Dec 2021 06:44:09: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 06:44:09: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 06:44:09: #1 total tags in treatment: 18751270 INFO @ Sat, 11 Dec 2021 06:44:09: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:44:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:44:09: #1 tags after filtering in treatment: 13994066 INFO @ Sat, 11 Dec 2021 06:44:09: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 06:44:09: #1 finished! INFO @ Sat, 11 Dec 2021 06:44:09: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:44:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:44:10: 44000000 INFO @ Sat, 11 Dec 2021 06:44:10: #2 number of paired peaks: 2408 INFO @ Sat, 11 Dec 2021 06:44:10: start model_add_line... INFO @ Sat, 11 Dec 2021 06:44:10: start X-correlation... INFO @ Sat, 11 Dec 2021 06:44:10: end of X-cor INFO @ Sat, 11 Dec 2021 06:44:10: #2 finished! INFO @ Sat, 11 Dec 2021 06:44:10: #2 predicted fragment length is 126 bps INFO @ Sat, 11 Dec 2021 06:44:10: #2 alternative fragment length(s) may be 126 bps INFO @ Sat, 11 Dec 2021 06:44:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.10_model.r WARNING @ Sat, 11 Dec 2021 06:44:10: #2 Since the d (126) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:44:10: #2 You may need to consider one of the other alternative d(s): 126 WARNING @ Sat, 11 Dec 2021 06:44:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:44:10: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:44:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:44:12: 48000000 INFO @ Sat, 11 Dec 2021 06:44:22: 45000000 INFO @ Sat, 11 Dec 2021 06:44:24: 49000000 INFO @ Sat, 11 Dec 2021 06:44:33: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 06:44:33: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 06:44:33: #1 total tags in treatment: 18751270 INFO @ Sat, 11 Dec 2021 06:44:33: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:44:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:44:33: 46000000 INFO @ Sat, 11 Dec 2021 06:44:34: #1 tags after filtering in treatment: 13994066 INFO @ Sat, 11 Dec 2021 06:44:34: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 06:44:34: #1 finished! INFO @ Sat, 11 Dec 2021 06:44:34: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:44:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:44:35: #2 number of paired peaks: 2408 INFO @ Sat, 11 Dec 2021 06:44:35: start model_add_line... INFO @ Sat, 11 Dec 2021 06:44:35: start X-correlation... INFO @ Sat, 11 Dec 2021 06:44:35: end of X-cor INFO @ Sat, 11 Dec 2021 06:44:35: #2 finished! INFO @ Sat, 11 Dec 2021 06:44:35: #2 predicted fragment length is 126 bps INFO @ Sat, 11 Dec 2021 06:44:35: #2 alternative fragment length(s) may be 126 bps INFO @ Sat, 11 Dec 2021 06:44:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.05_model.r WARNING @ Sat, 11 Dec 2021 06:44:35: #2 Since the d (126) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:44:35: #2 You may need to consider one of the other alternative d(s): 126 WARNING @ Sat, 11 Dec 2021 06:44:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:44:35: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:44:35: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:44:41: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:44:44: 47000000 INFO @ Sat, 11 Dec 2021 06:44:54: 48000000 INFO @ Sat, 11 Dec 2021 06:44:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.10_peaks.xls INFO @ Sat, 11 Dec 2021 06:44:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:44:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.10_summits.bed INFO @ Sat, 11 Dec 2021 06:44:57: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9661 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:45:04: 49000000 INFO @ Sat, 11 Dec 2021 06:45:06: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:45:11: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 06:45:11: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 06:45:11: #1 total tags in treatment: 18751270 INFO @ Sat, 11 Dec 2021 06:45:11: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:45:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:45:12: #1 tags after filtering in treatment: 13994066 INFO @ Sat, 11 Dec 2021 06:45:12: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 06:45:12: #1 finished! INFO @ Sat, 11 Dec 2021 06:45:12: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:45:12: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:45:13: #2 number of paired peaks: 2408 INFO @ Sat, 11 Dec 2021 06:45:13: start model_add_line... INFO @ Sat, 11 Dec 2021 06:45:13: start X-correlation... INFO @ Sat, 11 Dec 2021 06:45:13: end of X-cor INFO @ Sat, 11 Dec 2021 06:45:13: #2 finished! INFO @ Sat, 11 Dec 2021 06:45:13: #2 predicted fragment length is 126 bps INFO @ Sat, 11 Dec 2021 06:45:13: #2 alternative fragment length(s) may be 126 bps INFO @ Sat, 11 Dec 2021 06:45:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.20_model.r WARNING @ Sat, 11 Dec 2021 06:45:13: #2 Since the d (126) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:45:13: #2 You may need to consider one of the other alternative d(s): 126 WARNING @ Sat, 11 Dec 2021 06:45:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:45:13: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:45:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:45:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.05_peaks.xls INFO @ Sat, 11 Dec 2021 06:45:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:45:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.05_summits.bed INFO @ Sat, 11 Dec 2021 06:45:21: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (13985 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:45:43: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:45:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.20_peaks.xls INFO @ Sat, 11 Dec 2021 06:45:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:45:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978799/ERX3978799.20_summits.bed INFO @ Sat, 11 Dec 2021 06:45:58: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (5338 records, 4 fields): 6 millis CompletedMACS2peakCalling