Job ID = 14169879 SRX = ERX3978792 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28215746 spots for ERR3975822/ERR3975822.sra Written 28215746 spots for ERR3975822/ERR3975822.sra Read 32741025 spots for ERR3975836/ERR3975836.sra Written 32741025 spots for ERR3975836/ERR3975836.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170736 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:08:16 60956771 reads; of these: 60956771 (100.00%) were paired; of these: 26972445 (44.25%) aligned concordantly 0 times 20983722 (34.42%) aligned concordantly exactly 1 time 13000604 (21.33%) aligned concordantly >1 times ---- 26972445 pairs aligned concordantly 0 times; of these: 8609720 (31.92%) aligned discordantly 1 time ---- 18362725 pairs aligned 0 times concordantly or discordantly; of these: 36725450 mates make up the pairs; of these: 24571377 (66.91%) aligned 0 times 1608080 (4.38%) aligned exactly 1 time 10545993 (28.72%) aligned >1 times 79.85% overall alignment rate Time searching: 02:08:16 Overall time: 02:08:16 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 60 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9337435 / 41895372 = 0.2229 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:47:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:47:38: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:47:38: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:47:44: 1000000 INFO @ Sat, 11 Dec 2021 06:47:50: 2000000 INFO @ Sat, 11 Dec 2021 06:47:56: 3000000 INFO @ Sat, 11 Dec 2021 06:48:02: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:48:08: 5000000 INFO @ Sat, 11 Dec 2021 06:48:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:48:08: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:48:08: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:48:15: 6000000 INFO @ Sat, 11 Dec 2021 06:48:16: 1000000 INFO @ Sat, 11 Dec 2021 06:48:21: 7000000 INFO @ Sat, 11 Dec 2021 06:48:24: 2000000 INFO @ Sat, 11 Dec 2021 06:48:28: 8000000 INFO @ Sat, 11 Dec 2021 06:48:32: 3000000 INFO @ Sat, 11 Dec 2021 06:48:35: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:48:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:48:38: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:48:38: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:48:40: 4000000 INFO @ Sat, 11 Dec 2021 06:48:42: 10000000 INFO @ Sat, 11 Dec 2021 06:48:46: 1000000 INFO @ Sat, 11 Dec 2021 06:48:48: 11000000 INFO @ Sat, 11 Dec 2021 06:48:48: 5000000 INFO @ Sat, 11 Dec 2021 06:48:54: 2000000 INFO @ Sat, 11 Dec 2021 06:48:55: 12000000 INFO @ Sat, 11 Dec 2021 06:48:57: 6000000 INFO @ Sat, 11 Dec 2021 06:49:01: 3000000 INFO @ Sat, 11 Dec 2021 06:49:02: 13000000 INFO @ Sat, 11 Dec 2021 06:49:05: 7000000 INFO @ Sat, 11 Dec 2021 06:49:09: 4000000 INFO @ Sat, 11 Dec 2021 06:49:09: 14000000 INFO @ Sat, 11 Dec 2021 06:49:13: 8000000 INFO @ Sat, 11 Dec 2021 06:49:16: 15000000 INFO @ Sat, 11 Dec 2021 06:49:17: 5000000 INFO @ Sat, 11 Dec 2021 06:49:21: 9000000 INFO @ Sat, 11 Dec 2021 06:49:23: 16000000 INFO @ Sat, 11 Dec 2021 06:49:25: 6000000 INFO @ Sat, 11 Dec 2021 06:49:29: 10000000 INFO @ Sat, 11 Dec 2021 06:49:30: 17000000 INFO @ Sat, 11 Dec 2021 06:49:32: 7000000 INFO @ Sat, 11 Dec 2021 06:49:37: 11000000 INFO @ Sat, 11 Dec 2021 06:49:38: 18000000 INFO @ Sat, 11 Dec 2021 06:49:40: 8000000 INFO @ Sat, 11 Dec 2021 06:49:45: 19000000 INFO @ Sat, 11 Dec 2021 06:49:45: 12000000 INFO @ Sat, 11 Dec 2021 06:49:48: 9000000 INFO @ Sat, 11 Dec 2021 06:49:52: 20000000 INFO @ Sat, 11 Dec 2021 06:49:53: 13000000 INFO @ Sat, 11 Dec 2021 06:49:55: 10000000 INFO @ Sat, 11 Dec 2021 06:49:59: 21000000 INFO @ Sat, 11 Dec 2021 06:50:01: 14000000 INFO @ Sat, 11 Dec 2021 06:50:03: 11000000 INFO @ Sat, 11 Dec 2021 06:50:06: 22000000 INFO @ Sat, 11 Dec 2021 06:50:09: 15000000 INFO @ Sat, 11 Dec 2021 06:50:11: 12000000 INFO @ Sat, 11 Dec 2021 06:50:13: 23000000 INFO @ Sat, 11 Dec 2021 06:50:18: 16000000 INFO @ Sat, 11 Dec 2021 06:50:20: 13000000 INFO @ Sat, 11 Dec 2021 06:50:21: 24000000 INFO @ Sat, 11 Dec 2021 06:50:26: 17000000 INFO @ Sat, 11 Dec 2021 06:50:28: 25000000 INFO @ Sat, 11 Dec 2021 06:50:28: 14000000 INFO @ Sat, 11 Dec 2021 06:50:35: 18000000 INFO @ Sat, 11 Dec 2021 06:50:35: 26000000 INFO @ Sat, 11 Dec 2021 06:50:36: 15000000 INFO @ Sat, 11 Dec 2021 06:50:43: 27000000 INFO @ Sat, 11 Dec 2021 06:50:43: 19000000 INFO @ Sat, 11 Dec 2021 06:50:45: 16000000 INFO @ Sat, 11 Dec 2021 06:50:50: 28000000 INFO @ Sat, 11 Dec 2021 06:50:51: 20000000 INFO @ Sat, 11 Dec 2021 06:50:53: 17000000 INFO @ Sat, 11 Dec 2021 06:50:58: 29000000 INFO @ Sat, 11 Dec 2021 06:50:59: 21000000 INFO @ Sat, 11 Dec 2021 06:51:02: 18000000 INFO @ Sat, 11 Dec 2021 06:51:05: 30000000 INFO @ Sat, 11 Dec 2021 06:51:08: 22000000 INFO @ Sat, 11 Dec 2021 06:51:10: 19000000 INFO @ Sat, 11 Dec 2021 06:51:12: 31000000 INFO @ Sat, 11 Dec 2021 06:51:16: 23000000 INFO @ Sat, 11 Dec 2021 06:51:18: 20000000 INFO @ Sat, 11 Dec 2021 06:51:19: 32000000 INFO @ Sat, 11 Dec 2021 06:51:24: 24000000 INFO @ Sat, 11 Dec 2021 06:51:26: 33000000 INFO @ Sat, 11 Dec 2021 06:51:27: 21000000 INFO @ Sat, 11 Dec 2021 06:51:32: 25000000 INFO @ Sat, 11 Dec 2021 06:51:33: 34000000 INFO @ Sat, 11 Dec 2021 06:51:35: 22000000 INFO @ Sat, 11 Dec 2021 06:51:40: 35000000 INFO @ Sat, 11 Dec 2021 06:51:41: 26000000 INFO @ Sat, 11 Dec 2021 06:51:43: 23000000 INFO @ Sat, 11 Dec 2021 06:51:47: 36000000 INFO @ Sat, 11 Dec 2021 06:51:49: 27000000 INFO @ Sat, 11 Dec 2021 06:51:52: 24000000 INFO @ Sat, 11 Dec 2021 06:51:54: 37000000 INFO @ Sat, 11 Dec 2021 06:51:57: 28000000 INFO @ Sat, 11 Dec 2021 06:52:00: 25000000 INFO @ Sat, 11 Dec 2021 06:52:01: 38000000 INFO @ Sat, 11 Dec 2021 06:52:05: 29000000 INFO @ Sat, 11 Dec 2021 06:52:08: 39000000 INFO @ Sat, 11 Dec 2021 06:52:09: 26000000 INFO @ Sat, 11 Dec 2021 06:52:13: 30000000 INFO @ Sat, 11 Dec 2021 06:52:16: 40000000 INFO @ Sat, 11 Dec 2021 06:52:17: 27000000 INFO @ Sat, 11 Dec 2021 06:52:21: 31000000 INFO @ Sat, 11 Dec 2021 06:52:23: 41000000 INFO @ Sat, 11 Dec 2021 06:52:25: 28000000 INFO @ Sat, 11 Dec 2021 06:52:30: 32000000 INFO @ Sat, 11 Dec 2021 06:52:30: 42000000 INFO @ Sat, 11 Dec 2021 06:52:34: 29000000 INFO @ Sat, 11 Dec 2021 06:52:37: 43000000 INFO @ Sat, 11 Dec 2021 06:52:38: 33000000 INFO @ Sat, 11 Dec 2021 06:52:42: 30000000 INFO @ Sat, 11 Dec 2021 06:52:44: 44000000 INFO @ Sat, 11 Dec 2021 06:52:46: 34000000 INFO @ Sat, 11 Dec 2021 06:52:50: 31000000 INFO @ Sat, 11 Dec 2021 06:52:51: 45000000 INFO @ Sat, 11 Dec 2021 06:52:54: 35000000 INFO @ Sat, 11 Dec 2021 06:52:58: 46000000 INFO @ Sat, 11 Dec 2021 06:52:59: 32000000 INFO @ Sat, 11 Dec 2021 06:53:02: 36000000 INFO @ Sat, 11 Dec 2021 06:53:05: 47000000 INFO @ Sat, 11 Dec 2021 06:53:07: 33000000 INFO @ Sat, 11 Dec 2021 06:53:10: 37000000 INFO @ Sat, 11 Dec 2021 06:53:13: 48000000 INFO @ Sat, 11 Dec 2021 06:53:15: 34000000 INFO @ Sat, 11 Dec 2021 06:53:19: 38000000 INFO @ Sat, 11 Dec 2021 06:53:20: 49000000 INFO @ Sat, 11 Dec 2021 06:53:23: 35000000 INFO @ Sat, 11 Dec 2021 06:53:27: 50000000 INFO @ Sat, 11 Dec 2021 06:53:27: 39000000 INFO @ Sat, 11 Dec 2021 06:53:31: 36000000 INFO @ Sat, 11 Dec 2021 06:53:33: 51000000 INFO @ Sat, 11 Dec 2021 06:53:35: 40000000 INFO @ Sat, 11 Dec 2021 06:53:40: 37000000 INFO @ Sat, 11 Dec 2021 06:53:40: 52000000 INFO @ Sat, 11 Dec 2021 06:53:43: 41000000 INFO @ Sat, 11 Dec 2021 06:53:47: 53000000 INFO @ Sat, 11 Dec 2021 06:53:48: 38000000 INFO @ Sat, 11 Dec 2021 06:53:51: 42000000 INFO @ Sat, 11 Dec 2021 06:53:54: 54000000 INFO @ Sat, 11 Dec 2021 06:53:56: 39000000 INFO @ Sat, 11 Dec 2021 06:53:59: 43000000 INFO @ Sat, 11 Dec 2021 06:54:01: 55000000 INFO @ Sat, 11 Dec 2021 06:54:04: 40000000 INFO @ Sat, 11 Dec 2021 06:54:07: 44000000 INFO @ Sat, 11 Dec 2021 06:54:08: 56000000 INFO @ Sat, 11 Dec 2021 06:54:13: 41000000 INFO @ Sat, 11 Dec 2021 06:54:15: 45000000 INFO @ Sat, 11 Dec 2021 06:54:15: 57000000 INFO @ Sat, 11 Dec 2021 06:54:21: 42000000 INFO @ Sat, 11 Dec 2021 06:54:22: 58000000 INFO @ Sat, 11 Dec 2021 06:54:23: 46000000 INFO @ Sat, 11 Dec 2021 06:54:29: 59000000 INFO @ Sat, 11 Dec 2021 06:54:29: 43000000 INFO @ Sat, 11 Dec 2021 06:54:31: 47000000 INFO @ Sat, 11 Dec 2021 06:54:36: 60000000 INFO @ Sat, 11 Dec 2021 06:54:37: 44000000 INFO @ Sat, 11 Dec 2021 06:54:39: 48000000 INFO @ Sat, 11 Dec 2021 06:54:43: 61000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 06:54:45: 45000000 INFO @ Sat, 11 Dec 2021 06:54:47: 49000000 INFO @ Sat, 11 Dec 2021 06:54:50: 62000000 INFO @ Sat, 11 Dec 2021 06:54:53: 46000000 INFO @ Sat, 11 Dec 2021 06:54:54: 50000000 INFO @ Sat, 11 Dec 2021 06:54:57: 63000000 INFO @ Sat, 11 Dec 2021 06:55:01: 47000000 INFO @ Sat, 11 Dec 2021 06:55:02: 51000000 INFO @ Sat, 11 Dec 2021 06:55:04: 64000000 INFO @ Sat, 11 Dec 2021 06:55:09: 52000000 INFO @ Sat, 11 Dec 2021 06:55:09: 48000000 INFO @ Sat, 11 Dec 2021 06:55:12: 65000000 INFO @ Sat, 11 Dec 2021 06:55:17: 53000000 INFO @ Sat, 11 Dec 2021 06:55:17: 49000000 INFO @ Sat, 11 Dec 2021 06:55:19: 66000000 INFO @ Sat, 11 Dec 2021 06:55:24: 54000000 INFO @ Sat, 11 Dec 2021 06:55:25: 50000000 INFO @ Sat, 11 Dec 2021 06:55:26: 67000000 INFO @ Sat, 11 Dec 2021 06:55:32: 55000000 INFO @ Sat, 11 Dec 2021 06:55:32: 51000000 INFO @ Sat, 11 Dec 2021 06:55:33: 68000000 INFO @ Sat, 11 Dec 2021 06:55:40: 56000000 INFO @ Sat, 11 Dec 2021 06:55:40: 52000000 INFO @ Sat, 11 Dec 2021 06:55:41: 69000000 INFO @ Sat, 11 Dec 2021 06:55:47: 53000000 INFO @ Sat, 11 Dec 2021 06:55:48: 57000000 INFO @ Sat, 11 Dec 2021 06:55:48: 70000000 INFO @ Sat, 11 Dec 2021 06:55:55: 54000000 INFO @ Sat, 11 Dec 2021 06:55:55: 58000000 INFO @ Sat, 11 Dec 2021 06:55:56: 71000000 INFO @ Sat, 11 Dec 2021 06:56:03: 55000000 INFO @ Sat, 11 Dec 2021 06:56:03: 72000000 INFO @ Sat, 11 Dec 2021 06:56:04: 59000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 06:56:10: 56000000 INFO @ Sat, 11 Dec 2021 06:56:10: 73000000 INFO @ Sat, 11 Dec 2021 06:56:12: 60000000 INFO @ Sat, 11 Dec 2021 06:56:18: 74000000 INFO @ Sat, 11 Dec 2021 06:56:18: 57000000 INFO @ Sat, 11 Dec 2021 06:56:20: 61000000 INFO @ Sat, 11 Dec 2021 06:56:25: 75000000 INFO @ Sat, 11 Dec 2021 06:56:26: 58000000 INFO @ Sat, 11 Dec 2021 06:56:28: 62000000 INFO @ Sat, 11 Dec 2021 06:56:32: 76000000 INFO @ Sat, 11 Dec 2021 06:56:34: 59000000 INFO @ Sat, 11 Dec 2021 06:56:36: 63000000 INFO @ Sat, 11 Dec 2021 06:56:39: 77000000 INFO @ Sat, 11 Dec 2021 06:56:42: 60000000 INFO @ Sat, 11 Dec 2021 06:56:44: 64000000 INFO @ Sat, 11 Dec 2021 06:56:47: 78000000 INFO @ Sat, 11 Dec 2021 06:56:50: 61000000 INFO @ Sat, 11 Dec 2021 06:56:52: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 06:56:52: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 06:56:52: #1 total tags in treatment: 25300795 INFO @ Sat, 11 Dec 2021 06:56:52: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:56:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:56:52: 65000000 INFO @ Sat, 11 Dec 2021 06:56:52: #1 tags after filtering in treatment: 18649624 INFO @ Sat, 11 Dec 2021 06:56:52: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 06:56:52: #1 finished! INFO @ Sat, 11 Dec 2021 06:56:52: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:56:52: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:56:54: #2 number of paired peaks: 1221 INFO @ Sat, 11 Dec 2021 06:56:54: start model_add_line... INFO @ Sat, 11 Dec 2021 06:56:54: start X-correlation... INFO @ Sat, 11 Dec 2021 06:56:54: end of X-cor INFO @ Sat, 11 Dec 2021 06:56:54: #2 finished! INFO @ Sat, 11 Dec 2021 06:56:54: #2 predicted fragment length is 119 bps INFO @ Sat, 11 Dec 2021 06:56:54: #2 alternative fragment length(s) may be 119 bps INFO @ Sat, 11 Dec 2021 06:56:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.05_model.r WARNING @ Sat, 11 Dec 2021 06:56:54: #2 Since the d (119) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:56:54: #2 You may need to consider one of the other alternative d(s): 119 WARNING @ Sat, 11 Dec 2021 06:56:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:56:54: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:56:54: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:56:58: 62000000 INFO @ Sat, 11 Dec 2021 06:57:01: 66000000 INFO @ Sat, 11 Dec 2021 06:57:06: 63000000 INFO @ Sat, 11 Dec 2021 06:57:09: 67000000 INFO @ Sat, 11 Dec 2021 06:57:14: 64000000 INFO @ Sat, 11 Dec 2021 06:57:17: 68000000 INFO @ Sat, 11 Dec 2021 06:57:23: 65000000 INFO @ Sat, 11 Dec 2021 06:57:25: 69000000 INFO @ Sat, 11 Dec 2021 06:57:31: 66000000 INFO @ Sat, 11 Dec 2021 06:57:33: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:57:33: 70000000 INFO @ Sat, 11 Dec 2021 06:57:39: 67000000 INFO @ Sat, 11 Dec 2021 06:57:41: 71000000 INFO @ Sat, 11 Dec 2021 06:57:46: 68000000 INFO @ Sat, 11 Dec 2021 06:57:49: 72000000 INFO @ Sat, 11 Dec 2021 06:57:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.05_peaks.xls INFO @ Sat, 11 Dec 2021 06:57:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:57:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.05_summits.bed INFO @ Sat, 11 Dec 2021 06:57:54: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (15086 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:57:55: 69000000 INFO @ Sat, 11 Dec 2021 06:57:57: 73000000 INFO @ Sat, 11 Dec 2021 06:58:03: 70000000 INFO @ Sat, 11 Dec 2021 06:58:05: 74000000 INFO @ Sat, 11 Dec 2021 06:58:11: 71000000 INFO @ Sat, 11 Dec 2021 06:58:13: 75000000 INFO @ Sat, 11 Dec 2021 06:58:19: 72000000 INFO @ Sat, 11 Dec 2021 06:58:21: 76000000 INFO @ Sat, 11 Dec 2021 06:58:27: 73000000 INFO @ Sat, 11 Dec 2021 06:58:29: 77000000 INFO @ Sat, 11 Dec 2021 06:58:35: 74000000 INFO @ Sat, 11 Dec 2021 06:58:36: 78000000 INFO @ Sat, 11 Dec 2021 06:58:42: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 06:58:42: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 06:58:42: #1 total tags in treatment: 25300795 INFO @ Sat, 11 Dec 2021 06:58:42: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:58:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:58:42: #1 tags after filtering in treatment: 18649624 INFO @ Sat, 11 Dec 2021 06:58:42: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 06:58:42: #1 finished! INFO @ Sat, 11 Dec 2021 06:58:42: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:58:42: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:58:43: 75000000 INFO @ Sat, 11 Dec 2021 06:58:44: #2 number of paired peaks: 1221 INFO @ Sat, 11 Dec 2021 06:58:44: start model_add_line... INFO @ Sat, 11 Dec 2021 06:58:44: start X-correlation... INFO @ Sat, 11 Dec 2021 06:58:44: end of X-cor INFO @ Sat, 11 Dec 2021 06:58:44: #2 finished! INFO @ Sat, 11 Dec 2021 06:58:44: #2 predicted fragment length is 119 bps INFO @ Sat, 11 Dec 2021 06:58:44: #2 alternative fragment length(s) may be 119 bps INFO @ Sat, 11 Dec 2021 06:58:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.10_model.r WARNING @ Sat, 11 Dec 2021 06:58:44: #2 Since the d (119) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:58:44: #2 You may need to consider one of the other alternative d(s): 119 WARNING @ Sat, 11 Dec 2021 06:58:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:58:44: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:58:44: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:58:51: 76000000 INFO @ Sat, 11 Dec 2021 06:58:58: 77000000 INFO @ Sat, 11 Dec 2021 06:59:05: 78000000 INFO @ Sat, 11 Dec 2021 06:59:11: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 06:59:11: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 06:59:11: #1 total tags in treatment: 25300795 INFO @ Sat, 11 Dec 2021 06:59:11: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:59:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:59:11: #1 tags after filtering in treatment: 18649624 INFO @ Sat, 11 Dec 2021 06:59:11: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 06:59:11: #1 finished! INFO @ Sat, 11 Dec 2021 06:59:11: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:59:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:59:12: #2 number of paired peaks: 1221 INFO @ Sat, 11 Dec 2021 06:59:12: start model_add_line... INFO @ Sat, 11 Dec 2021 06:59:13: start X-correlation... INFO @ Sat, 11 Dec 2021 06:59:13: end of X-cor INFO @ Sat, 11 Dec 2021 06:59:13: #2 finished! INFO @ Sat, 11 Dec 2021 06:59:13: #2 predicted fragment length is 119 bps INFO @ Sat, 11 Dec 2021 06:59:13: #2 alternative fragment length(s) may be 119 bps INFO @ Sat, 11 Dec 2021 06:59:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.20_model.r WARNING @ Sat, 11 Dec 2021 06:59:13: #2 Since the d (119) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:59:13: #2 You may need to consider one of the other alternative d(s): 119 WARNING @ Sat, 11 Dec 2021 06:59:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:59:13: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:59:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:59:21: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:59:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.10_peaks.xls INFO @ Sat, 11 Dec 2021 06:59:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:59:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.10_summits.bed INFO @ Sat, 11 Dec 2021 06:59:39: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (10792 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:59:49: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:00:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.20_peaks.xls INFO @ Sat, 11 Dec 2021 07:00:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:00:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978792/ERX3978792.20_summits.bed INFO @ Sat, 11 Dec 2021 07:00:07: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (5934 records, 4 fields): 7 millis CompletedMACS2peakCalling