Job ID = 14169807 SRX = ERX3978789 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 23988989 spots for ERR3975818/ERR3975818.sra Written 23988989 spots for ERR3975818/ERR3975818.sra Read 20627229 spots for ERR3975850/ERR3975850.sra Written 20627229 spots for ERR3975850/ERR3975850.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170655 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:37:47 44616218 reads; of these: 44616218 (100.00%) were paired; of these: 8464858 (18.97%) aligned concordantly 0 times 26494182 (59.38%) aligned concordantly exactly 1 time 9657178 (21.64%) aligned concordantly >1 times ---- 8464858 pairs aligned concordantly 0 times; of these: 3597734 (42.50%) aligned discordantly 1 time ---- 4867124 pairs aligned 0 times concordantly or discordantly; of these: 9734248 mates make up the pairs; of these: 5907819 (60.69%) aligned 0 times 1008247 (10.36%) aligned exactly 1 time 2818182 (28.95%) aligned >1 times 93.38% overall alignment rate Time searching: 01:37:48 Overall time: 01:37:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9231257 / 39409040 = 0.2342 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 05:30:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 05:30:25: #1 read tag files... INFO @ Sat, 11 Dec 2021 05:30:25: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 05:30:33: 1000000 INFO @ Sat, 11 Dec 2021 05:30:41: 2000000 INFO @ Sat, 11 Dec 2021 05:30:49: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 05:30:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 05:30:54: #1 read tag files... INFO @ Sat, 11 Dec 2021 05:30:54: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 05:30:58: 4000000 INFO @ Sat, 11 Dec 2021 05:31:03: 1000000 INFO @ Sat, 11 Dec 2021 05:31:06: 5000000 INFO @ Sat, 11 Dec 2021 05:31:12: 2000000 INFO @ Sat, 11 Dec 2021 05:31:15: 6000000 INFO @ Sat, 11 Dec 2021 05:31:21: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 05:31:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 05:31:24: #1 read tag files... INFO @ Sat, 11 Dec 2021 05:31:24: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 05:31:24: 7000000 INFO @ Sat, 11 Dec 2021 05:31:30: 4000000 INFO @ Sat, 11 Dec 2021 05:31:33: 1000000 INFO @ Sat, 11 Dec 2021 05:31:34: 8000000 INFO @ Sat, 11 Dec 2021 05:31:39: 5000000 INFO @ Sat, 11 Dec 2021 05:31:42: 2000000 INFO @ Sat, 11 Dec 2021 05:31:43: 9000000 INFO @ Sat, 11 Dec 2021 05:31:49: 6000000 INFO @ Sat, 11 Dec 2021 05:31:52: 3000000 INFO @ Sat, 11 Dec 2021 05:31:52: 10000000 INFO @ Sat, 11 Dec 2021 05:31:58: 7000000 INFO @ Sat, 11 Dec 2021 05:32:01: 4000000 INFO @ Sat, 11 Dec 2021 05:32:01: 11000000 INFO @ Sat, 11 Dec 2021 05:32:07: 8000000 INFO @ Sat, 11 Dec 2021 05:32:11: 12000000 INFO @ Sat, 11 Dec 2021 05:32:11: 5000000 INFO @ Sat, 11 Dec 2021 05:32:16: 9000000 INFO @ Sat, 11 Dec 2021 05:32:20: 13000000 INFO @ Sat, 11 Dec 2021 05:32:20: 6000000 INFO @ Sat, 11 Dec 2021 05:32:26: 10000000 INFO @ Sat, 11 Dec 2021 05:32:29: 14000000 INFO @ Sat, 11 Dec 2021 05:32:30: 7000000 INFO @ Sat, 11 Dec 2021 05:32:35: 11000000 INFO @ Sat, 11 Dec 2021 05:32:38: 15000000 INFO @ Sat, 11 Dec 2021 05:32:40: 8000000 INFO @ Sat, 11 Dec 2021 05:32:44: 12000000 INFO @ Sat, 11 Dec 2021 05:32:48: 16000000 INFO @ Sat, 11 Dec 2021 05:32:49: 9000000 INFO @ Sat, 11 Dec 2021 05:32:53: 13000000 INFO @ Sat, 11 Dec 2021 05:32:57: 17000000 INFO @ Sat, 11 Dec 2021 05:32:58: 10000000 INFO @ Sat, 11 Dec 2021 05:33:02: 14000000 INFO @ Sat, 11 Dec 2021 05:33:06: 18000000 INFO @ Sat, 11 Dec 2021 05:33:08: 11000000 INFO @ Sat, 11 Dec 2021 05:33:12: 15000000 INFO @ Sat, 11 Dec 2021 05:33:15: 19000000 INFO @ Sat, 11 Dec 2021 05:33:18: 12000000 INFO @ Sat, 11 Dec 2021 05:33:21: 16000000 INFO @ Sat, 11 Dec 2021 05:33:24: 20000000 INFO @ Sat, 11 Dec 2021 05:33:27: 13000000 INFO @ Sat, 11 Dec 2021 05:33:30: 17000000 INFO @ Sat, 11 Dec 2021 05:33:33: 21000000 INFO @ Sat, 11 Dec 2021 05:33:36: 14000000 INFO @ Sat, 11 Dec 2021 05:33:39: 18000000 INFO @ Sat, 11 Dec 2021 05:33:42: 22000000 INFO @ Sat, 11 Dec 2021 05:33:46: 15000000 INFO @ Sat, 11 Dec 2021 05:33:48: 19000000 INFO @ Sat, 11 Dec 2021 05:33:51: 23000000 INFO @ Sat, 11 Dec 2021 05:33:55: 16000000 INFO @ Sat, 11 Dec 2021 05:33:57: 20000000 INFO @ Sat, 11 Dec 2021 05:34:00: 24000000 INFO @ Sat, 11 Dec 2021 05:34:04: 17000000 INFO @ Sat, 11 Dec 2021 05:34:06: 21000000 INFO @ Sat, 11 Dec 2021 05:34:10: 25000000 INFO @ Sat, 11 Dec 2021 05:34:14: 18000000 INFO @ Sat, 11 Dec 2021 05:34:15: 22000000 INFO @ Sat, 11 Dec 2021 05:34:19: 26000000 INFO @ Sat, 11 Dec 2021 05:34:23: 19000000 INFO @ Sat, 11 Dec 2021 05:34:24: 23000000 INFO @ Sat, 11 Dec 2021 05:34:28: 27000000 INFO @ Sat, 11 Dec 2021 05:34:32: 20000000 INFO @ Sat, 11 Dec 2021 05:34:33: 24000000 INFO @ Sat, 11 Dec 2021 05:34:37: 28000000 INFO @ Sat, 11 Dec 2021 05:34:41: 21000000 INFO @ Sat, 11 Dec 2021 05:34:43: 25000000 INFO @ Sat, 11 Dec 2021 05:34:47: 29000000 INFO @ Sat, 11 Dec 2021 05:34:51: 22000000 INFO @ Sat, 11 Dec 2021 05:34:52: 26000000 INFO @ Sat, 11 Dec 2021 05:34:56: 30000000 INFO @ Sat, 11 Dec 2021 05:35:00: 23000000 INFO @ Sat, 11 Dec 2021 05:35:01: 27000000 INFO @ Sat, 11 Dec 2021 05:35:05: 31000000 INFO @ Sat, 11 Dec 2021 05:35:09: 24000000 INFO @ Sat, 11 Dec 2021 05:35:11: 28000000 INFO @ Sat, 11 Dec 2021 05:35:14: 32000000 INFO @ Sat, 11 Dec 2021 05:35:19: 25000000 INFO @ Sat, 11 Dec 2021 05:35:20: 29000000 INFO @ Sat, 11 Dec 2021 05:35:23: 33000000 INFO @ Sat, 11 Dec 2021 05:35:28: 26000000 INFO @ Sat, 11 Dec 2021 05:35:29: 30000000 INFO @ Sat, 11 Dec 2021 05:35:32: 34000000 INFO @ Sat, 11 Dec 2021 05:35:38: 27000000 INFO @ Sat, 11 Dec 2021 05:35:38: 31000000 INFO @ Sat, 11 Dec 2021 05:35:41: 35000000 INFO @ Sat, 11 Dec 2021 05:35:47: 32000000 INFO @ Sat, 11 Dec 2021 05:35:47: 28000000 INFO @ Sat, 11 Dec 2021 05:35:50: 36000000 INFO @ Sat, 11 Dec 2021 05:35:56: 33000000 INFO @ Sat, 11 Dec 2021 05:35:57: 29000000 INFO @ Sat, 11 Dec 2021 05:35:59: 37000000 INFO @ Sat, 11 Dec 2021 05:36:05: 34000000 INFO @ Sat, 11 Dec 2021 05:36:06: 30000000 INFO @ Sat, 11 Dec 2021 05:36:08: 38000000 INFO @ Sat, 11 Dec 2021 05:36:14: 35000000 INFO @ Sat, 11 Dec 2021 05:36:15: 31000000 INFO @ Sat, 11 Dec 2021 05:36:17: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 05:36:23: 36000000 INFO @ Sat, 11 Dec 2021 05:36:24: 32000000 INFO @ Sat, 11 Dec 2021 05:36:26: 40000000 INFO @ Sat, 11 Dec 2021 05:36:32: 37000000 INFO @ Sat, 11 Dec 2021 05:36:33: 33000000 INFO @ Sat, 11 Dec 2021 05:36:35: 41000000 INFO @ Sat, 11 Dec 2021 05:36:40: 38000000 INFO @ Sat, 11 Dec 2021 05:36:42: 34000000 INFO @ Sat, 11 Dec 2021 05:36:45: 42000000 INFO @ Sat, 11 Dec 2021 05:36:49: 39000000 INFO @ Sat, 11 Dec 2021 05:36:51: 35000000 INFO @ Sat, 11 Dec 2021 05:36:54: 43000000 INFO @ Sat, 11 Dec 2021 05:36:58: 40000000 INFO @ Sat, 11 Dec 2021 05:37:00: 36000000 INFO @ Sat, 11 Dec 2021 05:37:03: 44000000 INFO @ Sat, 11 Dec 2021 05:37:07: 41000000 INFO @ Sat, 11 Dec 2021 05:37:09: 37000000 INFO @ Sat, 11 Dec 2021 05:37:13: 45000000 INFO @ Sat, 11 Dec 2021 05:37:16: 42000000 INFO @ Sat, 11 Dec 2021 05:37:18: 38000000 INFO @ Sat, 11 Dec 2021 05:37:22: 46000000 INFO @ Sat, 11 Dec 2021 05:37:25: 43000000 INFO @ Sat, 11 Dec 2021 05:37:27: 39000000 INFO @ Sat, 11 Dec 2021 05:37:31: 47000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 05:37:35: 44000000 INFO @ Sat, 11 Dec 2021 05:37:36: 40000000 INFO @ Sat, 11 Dec 2021 05:37:41: 48000000 INFO @ Sat, 11 Dec 2021 05:37:44: 45000000 INFO @ Sat, 11 Dec 2021 05:37:45: 41000000 INFO @ Sat, 11 Dec 2021 05:37:50: 49000000 INFO @ Sat, 11 Dec 2021 05:37:53: 46000000 INFO @ Sat, 11 Dec 2021 05:37:54: 42000000 INFO @ Sat, 11 Dec 2021 05:37:59: 50000000 INFO @ Sat, 11 Dec 2021 05:38:02: 47000000 INFO @ Sat, 11 Dec 2021 05:38:04: 43000000 INFO @ Sat, 11 Dec 2021 05:38:09: 51000000 INFO @ Sat, 11 Dec 2021 05:38:11: 48000000 INFO @ Sat, 11 Dec 2021 05:38:13: 44000000 INFO @ Sat, 11 Dec 2021 05:38:18: 52000000 INFO @ Sat, 11 Dec 2021 05:38:21: 49000000 INFO @ Sat, 11 Dec 2021 05:38:22: 45000000 INFO @ Sat, 11 Dec 2021 05:38:28: 53000000 INFO @ Sat, 11 Dec 2021 05:38:30: 50000000 INFO @ Sat, 11 Dec 2021 05:38:32: 46000000 INFO @ Sat, 11 Dec 2021 05:38:37: 54000000 INFO @ Sat, 11 Dec 2021 05:38:39: 51000000 INFO @ Sat, 11 Dec 2021 05:38:41: 47000000 INFO @ Sat, 11 Dec 2021 05:38:47: 55000000 INFO @ Sat, 11 Dec 2021 05:38:48: 52000000 INFO @ Sat, 11 Dec 2021 05:38:50: 48000000 INFO @ Sat, 11 Dec 2021 05:38:56: 56000000 INFO @ Sat, 11 Dec 2021 05:38:58: 53000000 INFO @ Sat, 11 Dec 2021 05:38:59: 49000000 INFO @ Sat, 11 Dec 2021 05:39:06: 57000000 INFO @ Sat, 11 Dec 2021 05:39:07: 54000000 INFO @ Sat, 11 Dec 2021 05:39:09: 50000000 INFO @ Sat, 11 Dec 2021 05:39:15: 58000000 INFO @ Sat, 11 Dec 2021 05:39:16: 55000000 INFO @ Sat, 11 Dec 2021 05:39:18: 51000000 INFO @ Sat, 11 Dec 2021 05:39:24: 59000000 INFO @ Sat, 11 Dec 2021 05:39:26: 56000000 INFO @ Sat, 11 Dec 2021 05:39:27: 52000000 INFO @ Sat, 11 Dec 2021 05:39:33: 60000000 INFO @ Sat, 11 Dec 2021 05:39:35: 57000000 INFO @ Sat, 11 Dec 2021 05:39:37: 53000000 INFO @ Sat, 11 Dec 2021 05:39:42: 61000000 INFO @ Sat, 11 Dec 2021 05:39:44: 58000000 INFO @ Sat, 11 Dec 2021 05:39:46: 54000000 INFO @ Sat, 11 Dec 2021 05:39:52: 62000000 INFO @ Sat, 11 Dec 2021 05:39:53: 59000000 INFO @ Sat, 11 Dec 2021 05:39:55: 55000000 INFO @ Sat, 11 Dec 2021 05:40:01: 63000000 INFO @ Sat, 11 Dec 2021 05:40:02: 60000000 INFO @ Sat, 11 Dec 2021 05:40:05: 56000000 INFO @ Sat, 11 Dec 2021 05:40:10: 64000000 INFO @ Sat, 11 Dec 2021 05:40:12: 61000000 INFO @ Sat, 11 Dec 2021 05:40:14: 57000000 INFO @ Sat, 11 Dec 2021 05:40:18: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 05:40:18: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 05:40:18: #1 total tags in treatment: 27343806 INFO @ Sat, 11 Dec 2021 05:40:18: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 05:40:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 05:40:19: #1 tags after filtering in treatment: 19140663 INFO @ Sat, 11 Dec 2021 05:40:19: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 05:40:19: #1 finished! INFO @ Sat, 11 Dec 2021 05:40:19: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 05:40:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 05:40:20: #2 number of paired peaks: 2180 INFO @ Sat, 11 Dec 2021 05:40:20: start model_add_line... INFO @ Sat, 11 Dec 2021 05:40:20: start X-correlation... INFO @ Sat, 11 Dec 2021 05:40:20: end of X-cor INFO @ Sat, 11 Dec 2021 05:40:20: #2 finished! INFO @ Sat, 11 Dec 2021 05:40:20: #2 predicted fragment length is 149 bps INFO @ Sat, 11 Dec 2021 05:40:20: #2 alternative fragment length(s) may be 4,149 bps INFO @ Sat, 11 Dec 2021 05:40:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.05_model.r WARNING @ Sat, 11 Dec 2021 05:40:20: #2 Since the d (149) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 05:40:20: #2 You may need to consider one of the other alternative d(s): 4,149 WARNING @ Sat, 11 Dec 2021 05:40:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 05:40:20: #3 Call peaks... INFO @ Sat, 11 Dec 2021 05:40:20: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 05:40:21: 62000000 INFO @ Sat, 11 Dec 2021 05:40:23: 58000000 INFO @ Sat, 11 Dec 2021 05:40:30: 63000000 INFO @ Sat, 11 Dec 2021 05:40:33: 59000000 INFO @ Sat, 11 Dec 2021 05:40:39: 64000000 INFO @ Sat, 11 Dec 2021 05:40:42: 60000000 INFO @ Sat, 11 Dec 2021 05:40:46: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 05:40:46: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 05:40:46: #1 total tags in treatment: 27343806 INFO @ Sat, 11 Dec 2021 05:40:46: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 05:40:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 05:40:47: #1 tags after filtering in treatment: 19140663 INFO @ Sat, 11 Dec 2021 05:40:47: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 05:40:47: #1 finished! INFO @ Sat, 11 Dec 2021 05:40:47: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 05:40:47: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 05:40:48: #2 number of paired peaks: 2180 INFO @ Sat, 11 Dec 2021 05:40:48: start model_add_line... INFO @ Sat, 11 Dec 2021 05:40:49: start X-correlation... INFO @ Sat, 11 Dec 2021 05:40:49: end of X-cor INFO @ Sat, 11 Dec 2021 05:40:49: #2 finished! INFO @ Sat, 11 Dec 2021 05:40:49: #2 predicted fragment length is 149 bps INFO @ Sat, 11 Dec 2021 05:40:49: #2 alternative fragment length(s) may be 4,149 bps INFO @ Sat, 11 Dec 2021 05:40:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.10_model.r WARNING @ Sat, 11 Dec 2021 05:40:49: #2 Since the d (149) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 05:40:49: #2 You may need to consider one of the other alternative d(s): 4,149 WARNING @ Sat, 11 Dec 2021 05:40:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 05:40:49: #3 Call peaks... INFO @ Sat, 11 Dec 2021 05:40:49: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 05:40:51: 61000000 INFO @ Sat, 11 Dec 2021 05:40:59: 62000000 INFO @ Sat, 11 Dec 2021 05:41:00: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 05:41:08: 63000000 INFO @ Sat, 11 Dec 2021 05:41:16: 64000000 INFO @ Sat, 11 Dec 2021 05:41:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.05_peaks.xls INFO @ Sat, 11 Dec 2021 05:41:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 05:41:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.05_summits.bed INFO @ Sat, 11 Dec 2021 05:41:21: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (13702 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 05:41:24: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 05:41:24: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 05:41:24: #1 total tags in treatment: 27343806 INFO @ Sat, 11 Dec 2021 05:41:24: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 05:41:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 05:41:24: #1 tags after filtering in treatment: 19140663 INFO @ Sat, 11 Dec 2021 05:41:24: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 05:41:24: #1 finished! INFO @ Sat, 11 Dec 2021 05:41:24: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 05:41:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 05:41:26: #2 number of paired peaks: 2180 INFO @ Sat, 11 Dec 2021 05:41:26: start model_add_line... INFO @ Sat, 11 Dec 2021 05:41:26: start X-correlation... INFO @ Sat, 11 Dec 2021 05:41:26: end of X-cor INFO @ Sat, 11 Dec 2021 05:41:26: #2 finished! INFO @ Sat, 11 Dec 2021 05:41:26: #2 predicted fragment length is 149 bps INFO @ Sat, 11 Dec 2021 05:41:26: #2 alternative fragment length(s) may be 4,149 bps INFO @ Sat, 11 Dec 2021 05:41:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.20_model.r WARNING @ Sat, 11 Dec 2021 05:41:26: #2 Since the d (149) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 05:41:26: #2 You may need to consider one of the other alternative d(s): 4,149 WARNING @ Sat, 11 Dec 2021 05:41:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 05:41:26: #3 Call peaks... INFO @ Sat, 11 Dec 2021 05:41:26: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 05:41:29: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 05:41:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.10_peaks.xls INFO @ Sat, 11 Dec 2021 05:41:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 05:41:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.10_summits.bed INFO @ Sat, 11 Dec 2021 05:41:50: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10494 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 05:42:05: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 05:42:25: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.20_peaks.xls INFO @ Sat, 11 Dec 2021 05:42:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 05:42:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978789/ERX3978789.20_summits.bed INFO @ Sat, 11 Dec 2021 05:42:25: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (6731 records, 4 fields): 8 millis CompletedMACS2peakCalling