Job ID = 14169703 SRX = ERX3978786 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 22431593 spots for ERR3975815/ERR3975815.sra Written 22431593 spots for ERR3975815/ERR3975815.sra Read 28005129 spots for ERR3975819/ERR3975819.sra Written 28005129 spots for ERR3975819/ERR3975819.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170644 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:37:03 50436722 reads; of these: 50436722 (100.00%) were paired; of these: 14961613 (29.66%) aligned concordantly 0 times 29018309 (57.53%) aligned concordantly exactly 1 time 6456800 (12.80%) aligned concordantly >1 times ---- 14961613 pairs aligned concordantly 0 times; of these: 6950746 (46.46%) aligned discordantly 1 time ---- 8010867 pairs aligned 0 times concordantly or discordantly; of these: 16021734 mates make up the pairs; of these: 12860597 (80.27%) aligned 0 times 1054900 (6.58%) aligned exactly 1 time 2106237 (13.15%) aligned >1 times 87.25% overall alignment rate Time searching: 01:37:04 Overall time: 01:37:04 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7700740 / 41895213 = 0.1838 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 05:24:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 05:24:36: #1 read tag files... INFO @ Sat, 11 Dec 2021 05:24:36: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 05:24:44: 1000000 INFO @ Sat, 11 Dec 2021 05:24:52: 2000000 INFO @ Sat, 11 Dec 2021 05:25:01: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 05:25:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 05:25:06: #1 read tag files... INFO @ Sat, 11 Dec 2021 05:25:06: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 05:25:09: 4000000 INFO @ Sat, 11 Dec 2021 05:25:15: 1000000 INFO @ Sat, 11 Dec 2021 05:25:18: 5000000 INFO @ Sat, 11 Dec 2021 05:25:24: 2000000 INFO @ Sat, 11 Dec 2021 05:25:27: 6000000 INFO @ Sat, 11 Dec 2021 05:25:33: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 05:25:35: 7000000 INFO @ Sat, 11 Dec 2021 05:25:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 05:25:36: #1 read tag files... INFO @ Sat, 11 Dec 2021 05:25:36: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 05:25:42: 4000000 INFO @ Sat, 11 Dec 2021 05:25:44: 8000000 INFO @ Sat, 11 Dec 2021 05:25:45: 1000000 INFO @ Sat, 11 Dec 2021 05:25:51: 5000000 INFO @ Sat, 11 Dec 2021 05:25:53: 9000000 INFO @ Sat, 11 Dec 2021 05:25:54: 2000000 INFO @ Sat, 11 Dec 2021 05:25:59: 6000000 INFO @ Sat, 11 Dec 2021 05:26:02: 10000000 INFO @ Sat, 11 Dec 2021 05:26:03: 3000000 INFO @ Sat, 11 Dec 2021 05:26:09: 7000000 INFO @ Sat, 11 Dec 2021 05:26:12: 11000000 INFO @ Sat, 11 Dec 2021 05:26:12: 4000000 INFO @ Sat, 11 Dec 2021 05:26:17: 8000000 INFO @ Sat, 11 Dec 2021 05:26:21: 12000000 INFO @ Sat, 11 Dec 2021 05:26:21: 5000000 INFO @ Sat, 11 Dec 2021 05:26:26: 9000000 INFO @ Sat, 11 Dec 2021 05:26:30: 13000000 INFO @ Sat, 11 Dec 2021 05:26:30: 6000000 INFO @ Sat, 11 Dec 2021 05:26:35: 10000000 INFO @ Sat, 11 Dec 2021 05:26:38: 14000000 INFO @ Sat, 11 Dec 2021 05:26:39: 7000000 INFO @ Sat, 11 Dec 2021 05:26:44: 11000000 INFO @ Sat, 11 Dec 2021 05:26:47: 15000000 INFO @ Sat, 11 Dec 2021 05:26:48: 8000000 INFO @ Sat, 11 Dec 2021 05:26:53: 12000000 INFO @ Sat, 11 Dec 2021 05:26:56: 16000000 INFO @ Sat, 11 Dec 2021 05:26:57: 9000000 INFO @ Sat, 11 Dec 2021 05:27:02: 13000000 INFO @ Sat, 11 Dec 2021 05:27:05: 17000000 INFO @ Sat, 11 Dec 2021 05:27:06: 10000000 INFO @ Sat, 11 Dec 2021 05:27:11: 14000000 INFO @ Sat, 11 Dec 2021 05:27:14: 18000000 INFO @ Sat, 11 Dec 2021 05:27:15: 11000000 INFO @ Sat, 11 Dec 2021 05:27:20: 15000000 INFO @ Sat, 11 Dec 2021 05:27:24: 19000000 INFO @ Sat, 11 Dec 2021 05:27:24: 12000000 INFO @ Sat, 11 Dec 2021 05:27:29: 16000000 INFO @ Sat, 11 Dec 2021 05:27:33: 20000000 INFO @ Sat, 11 Dec 2021 05:27:33: 13000000 INFO @ Sat, 11 Dec 2021 05:27:38: 17000000 INFO @ Sat, 11 Dec 2021 05:27:42: 21000000 INFO @ Sat, 11 Dec 2021 05:27:42: 14000000 INFO @ Sat, 11 Dec 2021 05:27:47: 18000000 INFO @ Sat, 11 Dec 2021 05:27:51: 15000000 INFO @ Sat, 11 Dec 2021 05:27:51: 22000000 INFO @ Sat, 11 Dec 2021 05:27:56: 19000000 INFO @ Sat, 11 Dec 2021 05:28:00: 16000000 INFO @ Sat, 11 Dec 2021 05:28:00: 23000000 INFO @ Sat, 11 Dec 2021 05:28:05: 20000000 INFO @ Sat, 11 Dec 2021 05:28:08: 17000000 INFO @ Sat, 11 Dec 2021 05:28:09: 24000000 INFO @ Sat, 11 Dec 2021 05:28:14: 21000000 INFO @ Sat, 11 Dec 2021 05:28:17: 18000000 INFO @ Sat, 11 Dec 2021 05:28:18: 25000000 INFO @ Sat, 11 Dec 2021 05:28:23: 22000000 INFO @ Sat, 11 Dec 2021 05:28:26: 19000000 INFO @ Sat, 11 Dec 2021 05:28:27: 26000000 INFO @ Sat, 11 Dec 2021 05:28:32: 23000000 INFO @ Sat, 11 Dec 2021 05:28:35: 20000000 INFO @ Sat, 11 Dec 2021 05:28:36: 27000000 INFO @ Sat, 11 Dec 2021 05:28:41: 24000000 INFO @ Sat, 11 Dec 2021 05:28:44: 21000000 INFO @ Sat, 11 Dec 2021 05:28:45: 28000000 INFO @ Sat, 11 Dec 2021 05:28:50: 25000000 INFO @ Sat, 11 Dec 2021 05:28:53: 22000000 INFO @ Sat, 11 Dec 2021 05:28:54: 29000000 INFO @ Sat, 11 Dec 2021 05:28:59: 26000000 INFO @ Sat, 11 Dec 2021 05:29:02: 23000000 INFO @ Sat, 11 Dec 2021 05:29:03: 30000000 INFO @ Sat, 11 Dec 2021 05:29:08: 27000000 INFO @ Sat, 11 Dec 2021 05:29:11: 24000000 INFO @ Sat, 11 Dec 2021 05:29:12: 31000000 INFO @ Sat, 11 Dec 2021 05:29:17: 28000000 INFO @ Sat, 11 Dec 2021 05:29:20: 25000000 INFO @ Sat, 11 Dec 2021 05:29:21: 32000000 INFO @ Sat, 11 Dec 2021 05:29:26: 29000000 INFO @ Sat, 11 Dec 2021 05:29:29: 26000000 INFO @ Sat, 11 Dec 2021 05:29:30: 33000000 INFO @ Sat, 11 Dec 2021 05:29:35: 30000000 INFO @ Sat, 11 Dec 2021 05:29:38: 27000000 INFO @ Sat, 11 Dec 2021 05:29:39: 34000000 INFO @ Sat, 11 Dec 2021 05:29:44: 31000000 INFO @ Sat, 11 Dec 2021 05:29:48: 28000000 INFO @ Sat, 11 Dec 2021 05:29:48: 35000000 INFO @ Sat, 11 Dec 2021 05:29:53: 32000000 INFO @ Sat, 11 Dec 2021 05:29:57: 29000000 INFO @ Sat, 11 Dec 2021 05:29:57: 36000000 INFO @ Sat, 11 Dec 2021 05:30:02: 33000000 INFO @ Sat, 11 Dec 2021 05:30:05: 30000000 INFO @ Sat, 11 Dec 2021 05:30:06: 37000000 INFO @ Sat, 11 Dec 2021 05:30:11: 34000000 INFO @ Sat, 11 Dec 2021 05:30:14: 31000000 INFO @ Sat, 11 Dec 2021 05:30:15: 38000000 INFO @ Sat, 11 Dec 2021 05:30:20: 35000000 INFO @ Sat, 11 Dec 2021 05:30:23: 32000000 INFO @ Sat, 11 Dec 2021 05:30:24: 39000000 INFO @ Sat, 11 Dec 2021 05:30:29: 36000000 INFO @ Sat, 11 Dec 2021 05:30:32: 33000000 INFO @ Sat, 11 Dec 2021 05:30:33: 40000000 INFO @ Sat, 11 Dec 2021 05:30:38: 37000000 INFO @ Sat, 11 Dec 2021 05:30:41: 34000000 INFO @ Sat, 11 Dec 2021 05:30:42: 41000000 INFO @ Sat, 11 Dec 2021 05:30:46: 38000000 INFO @ Sat, 11 Dec 2021 05:30:50: 35000000 INFO @ Sat, 11 Dec 2021 05:30:51: 42000000 INFO @ Sat, 11 Dec 2021 05:30:55: 39000000 INFO @ Sat, 11 Dec 2021 05:30:59: 36000000 INFO @ Sat, 11 Dec 2021 05:31:00: 43000000 INFO @ Sat, 11 Dec 2021 05:31:04: 40000000 INFO @ Sat, 11 Dec 2021 05:31:08: 37000000 INFO @ Sat, 11 Dec 2021 05:31:09: 44000000 INFO @ Sat, 11 Dec 2021 05:31:13: 41000000 INFO @ Sat, 11 Dec 2021 05:31:16: 38000000 INFO @ Sat, 11 Dec 2021 05:31:18: 45000000 INFO @ Sat, 11 Dec 2021 05:31:22: 42000000 INFO @ Sat, 11 Dec 2021 05:31:25: 39000000 INFO @ Sat, 11 Dec 2021 05:31:27: 46000000 INFO @ Sat, 11 Dec 2021 05:31:31: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 05:31:34: 40000000 INFO @ Sat, 11 Dec 2021 05:31:36: 47000000 INFO @ Sat, 11 Dec 2021 05:31:40: 44000000 INFO @ Sat, 11 Dec 2021 05:31:43: 41000000 INFO @ Sat, 11 Dec 2021 05:31:45: 48000000 INFO @ Sat, 11 Dec 2021 05:31:49: 45000000 INFO @ Sat, 11 Dec 2021 05:31:52: 42000000 INFO @ Sat, 11 Dec 2021 05:31:54: 49000000 INFO @ Sat, 11 Dec 2021 05:31:58: 46000000 INFO @ Sat, 11 Dec 2021 05:32:01: 43000000 INFO @ Sat, 11 Dec 2021 05:32:03: 50000000 INFO @ Sat, 11 Dec 2021 05:32:07: 47000000 INFO @ Sat, 11 Dec 2021 05:32:10: 44000000 INFO @ Sat, 11 Dec 2021 05:32:12: 51000000 INFO @ Sat, 11 Dec 2021 05:32:16: 48000000 INFO @ Sat, 11 Dec 2021 05:32:19: 45000000 INFO @ Sat, 11 Dec 2021 05:32:21: 52000000 INFO @ Sat, 11 Dec 2021 05:32:25: 49000000 INFO @ Sat, 11 Dec 2021 05:32:27: 46000000 INFO @ Sat, 11 Dec 2021 05:32:30: 53000000 INFO @ Sat, 11 Dec 2021 05:32:34: 50000000 INFO @ Sat, 11 Dec 2021 05:32:36: 47000000 INFO @ Sat, 11 Dec 2021 05:32:38: 54000000 INFO @ Sat, 11 Dec 2021 05:32:43: 51000000 INFO @ Sat, 11 Dec 2021 05:32:45: 48000000 INFO @ Sat, 11 Dec 2021 05:32:47: 55000000 INFO @ Sat, 11 Dec 2021 05:32:52: 52000000 INFO @ Sat, 11 Dec 2021 05:32:54: 49000000 INFO @ Sat, 11 Dec 2021 05:32:55: 56000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 05:33:01: 53000000 INFO @ Sat, 11 Dec 2021 05:33:03: 50000000 INFO @ Sat, 11 Dec 2021 05:33:04: 57000000 INFO @ Sat, 11 Dec 2021 05:33:09: 54000000 INFO @ Sat, 11 Dec 2021 05:33:12: 51000000 INFO @ Sat, 11 Dec 2021 05:33:13: 58000000 INFO @ Sat, 11 Dec 2021 05:33:18: 55000000 INFO @ Sat, 11 Dec 2021 05:33:21: 52000000 INFO @ Sat, 11 Dec 2021 05:33:21: 59000000 INFO @ Sat, 11 Dec 2021 05:33:26: 56000000 INFO @ Sat, 11 Dec 2021 05:33:30: 53000000 INFO @ Sat, 11 Dec 2021 05:33:30: 60000000 INFO @ Sat, 11 Dec 2021 05:33:35: 57000000 INFO @ Sat, 11 Dec 2021 05:33:38: 54000000 INFO @ Sat, 11 Dec 2021 05:33:39: 61000000 INFO @ Sat, 11 Dec 2021 05:33:44: 58000000 INFO @ Sat, 11 Dec 2021 05:33:47: 55000000 INFO @ Sat, 11 Dec 2021 05:33:48: 62000000 INFO @ Sat, 11 Dec 2021 05:33:52: 59000000 INFO @ Sat, 11 Dec 2021 05:33:56: 56000000 INFO @ Sat, 11 Dec 2021 05:33:56: 63000000 INFO @ Sat, 11 Dec 2021 05:34:01: 60000000 INFO @ Sat, 11 Dec 2021 05:34:04: 57000000 INFO @ Sat, 11 Dec 2021 05:34:05: 64000000 INFO @ Sat, 11 Dec 2021 05:34:10: 61000000 INFO @ Sat, 11 Dec 2021 05:34:13: 58000000 INFO @ Sat, 11 Dec 2021 05:34:14: 65000000 INFO @ Sat, 11 Dec 2021 05:34:19: 62000000 INFO @ Sat, 11 Dec 2021 05:34:22: 59000000 INFO @ Sat, 11 Dec 2021 05:34:23: 66000000 INFO @ Sat, 11 Dec 2021 05:34:27: 63000000 INFO @ Sat, 11 Dec 2021 05:34:31: 60000000 INFO @ Sat, 11 Dec 2021 05:34:31: 67000000 INFO @ Sat, 11 Dec 2021 05:34:36: 64000000 INFO @ Sat, 11 Dec 2021 05:34:40: 61000000 INFO @ Sat, 11 Dec 2021 05:34:40: 68000000 INFO @ Sat, 11 Dec 2021 05:34:45: 65000000 INFO @ Sat, 11 Dec 2021 05:34:48: 62000000 INFO @ Sat, 11 Dec 2021 05:34:49: 69000000 INFO @ Sat, 11 Dec 2021 05:34:54: 66000000 INFO @ Sat, 11 Dec 2021 05:34:57: 63000000 INFO @ Sat, 11 Dec 2021 05:34:57: 70000000 INFO @ Sat, 11 Dec 2021 05:35:02: 67000000 INFO @ Sat, 11 Dec 2021 05:35:06: 64000000 INFO @ Sat, 11 Dec 2021 05:35:06: 71000000 INFO @ Sat, 11 Dec 2021 05:35:11: 68000000 INFO @ Sat, 11 Dec 2021 05:35:15: 65000000 INFO @ Sat, 11 Dec 2021 05:35:15: 72000000 INFO @ Sat, 11 Dec 2021 05:35:20: 69000000 INFO @ Sat, 11 Dec 2021 05:35:20: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 05:35:20: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 05:35:20: #1 total tags in treatment: 28645648 INFO @ Sat, 11 Dec 2021 05:35:20: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 05:35:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 05:35:21: #1 tags after filtering in treatment: 21603806 INFO @ Sat, 11 Dec 2021 05:35:21: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 05:35:21: #1 finished! INFO @ Sat, 11 Dec 2021 05:35:21: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 05:35:21: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 05:35:22: #2 number of paired peaks: 1131 INFO @ Sat, 11 Dec 2021 05:35:22: start model_add_line... INFO @ Sat, 11 Dec 2021 05:35:23: start X-correlation... INFO @ Sat, 11 Dec 2021 05:35:23: end of X-cor INFO @ Sat, 11 Dec 2021 05:35:23: #2 finished! INFO @ Sat, 11 Dec 2021 05:35:23: #2 predicted fragment length is 114 bps INFO @ Sat, 11 Dec 2021 05:35:23: #2 alternative fragment length(s) may be 114 bps INFO @ Sat, 11 Dec 2021 05:35:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.05_model.r WARNING @ Sat, 11 Dec 2021 05:35:23: #2 Since the d (114) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 05:35:23: #2 You may need to consider one of the other alternative d(s): 114 WARNING @ Sat, 11 Dec 2021 05:35:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 05:35:23: #3 Call peaks... INFO @ Sat, 11 Dec 2021 05:35:23: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 05:35:23: 66000000 INFO @ Sat, 11 Dec 2021 05:35:28: 70000000 INFO @ Sat, 11 Dec 2021 05:35:32: 67000000 INFO @ Sat, 11 Dec 2021 05:35:37: 71000000 INFO @ Sat, 11 Dec 2021 05:35:40: 68000000 INFO @ Sat, 11 Dec 2021 05:35:45: 72000000 INFO @ Sat, 11 Dec 2021 05:35:49: 69000000 INFO @ Sat, 11 Dec 2021 05:35:51: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 05:35:51: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 05:35:51: #1 total tags in treatment: 28645648 INFO @ Sat, 11 Dec 2021 05:35:51: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 05:35:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 05:35:51: #1 tags after filtering in treatment: 21603806 INFO @ Sat, 11 Dec 2021 05:35:51: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 05:35:51: #1 finished! INFO @ Sat, 11 Dec 2021 05:35:51: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 05:35:51: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 05:35:53: #2 number of paired peaks: 1131 INFO @ Sat, 11 Dec 2021 05:35:53: start model_add_line... INFO @ Sat, 11 Dec 2021 05:35:53: start X-correlation... INFO @ Sat, 11 Dec 2021 05:35:53: end of X-cor INFO @ Sat, 11 Dec 2021 05:35:53: #2 finished! INFO @ Sat, 11 Dec 2021 05:35:53: #2 predicted fragment length is 114 bps INFO @ Sat, 11 Dec 2021 05:35:53: #2 alternative fragment length(s) may be 114 bps INFO @ Sat, 11 Dec 2021 05:35:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.10_model.r WARNING @ Sat, 11 Dec 2021 05:35:53: #2 Since the d (114) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 05:35:53: #2 You may need to consider one of the other alternative d(s): 114 WARNING @ Sat, 11 Dec 2021 05:35:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 05:35:53: #3 Call peaks... INFO @ Sat, 11 Dec 2021 05:35:53: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 05:35:57: 70000000 INFO @ Sat, 11 Dec 2021 05:36:05: 71000000 INFO @ Sat, 11 Dec 2021 05:36:06: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 05:36:13: 72000000 INFO @ Sat, 11 Dec 2021 05:36:19: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 05:36:19: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 05:36:19: #1 total tags in treatment: 28645648 INFO @ Sat, 11 Dec 2021 05:36:19: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 05:36:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 05:36:19: #1 tags after filtering in treatment: 21603806 INFO @ Sat, 11 Dec 2021 05:36:19: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 05:36:19: #1 finished! INFO @ Sat, 11 Dec 2021 05:36:19: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 05:36:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 05:36:21: #2 number of paired peaks: 1131 INFO @ Sat, 11 Dec 2021 05:36:21: start model_add_line... INFO @ Sat, 11 Dec 2021 05:36:21: start X-correlation... INFO @ Sat, 11 Dec 2021 05:36:21: end of X-cor INFO @ Sat, 11 Dec 2021 05:36:21: #2 finished! INFO @ Sat, 11 Dec 2021 05:36:21: #2 predicted fragment length is 114 bps INFO @ Sat, 11 Dec 2021 05:36:21: #2 alternative fragment length(s) may be 114 bps INFO @ Sat, 11 Dec 2021 05:36:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.20_model.r WARNING @ Sat, 11 Dec 2021 05:36:21: #2 Since the d (114) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 05:36:21: #2 You may need to consider one of the other alternative d(s): 114 WARNING @ Sat, 11 Dec 2021 05:36:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 05:36:21: #3 Call peaks... INFO @ Sat, 11 Dec 2021 05:36:21: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 05:36:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.05_peaks.xls INFO @ Sat, 11 Dec 2021 05:36:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 05:36:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.05_summits.bed INFO @ Sat, 11 Dec 2021 05:36:28: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (15127 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 05:36:36: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 05:36:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.10_peaks.xls INFO @ Sat, 11 Dec 2021 05:36:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 05:36:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.10_summits.bed INFO @ Sat, 11 Dec 2021 05:36:58: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11531 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 05:37:04: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 05:37:25: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.20_peaks.xls INFO @ Sat, 11 Dec 2021 05:37:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 05:37:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978786/ERX3978786.20_summits.bed INFO @ Sat, 11 Dec 2021 05:37:25: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6797 records, 4 fields): 7 millis CompletedMACS2peakCalling