Job ID = 14169702 SRX = ERX3978785 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 22065572 spots for ERR3975814/ERR3975814.sra Written 22065572 spots for ERR3975814/ERR3975814.sra Read 27848565 spots for ERR3975839/ERR3975839.sra Written 27848565 spots for ERR3975839/ERR3975839.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170729 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:51:11 49914137 reads; of these: 49914137 (100.00%) were paired; of these: 12239514 (24.52%) aligned concordantly 0 times 25582768 (51.25%) aligned concordantly exactly 1 time 12091855 (24.23%) aligned concordantly >1 times ---- 12239514 pairs aligned concordantly 0 times; of these: 5795426 (47.35%) aligned discordantly 1 time ---- 6444088 pairs aligned 0 times concordantly or discordantly; of these: 12888176 mates make up the pairs; of these: 6956129 (53.97%) aligned 0 times 962554 (7.47%) aligned exactly 1 time 4969493 (38.56%) aligned >1 times 93.03% overall alignment rate Time searching: 02:51:11 Overall time: 02:51:11 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7656503 / 42929789 = 0.1783 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:55:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:55:48: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:55:48: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:56:04: 1000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:56:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:56:16: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:56:16: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:56:22: 2000000 INFO @ Sat, 11 Dec 2021 06:56:35: 1000000 INFO @ Sat, 11 Dec 2021 06:56:40: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:56:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:56:46: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:56:46: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:56:53: 2000000 INFO @ Sat, 11 Dec 2021 06:56:57: 4000000 INFO @ Sat, 11 Dec 2021 06:56:59: 1000000 INFO @ Sat, 11 Dec 2021 06:57:11: 3000000 INFO @ Sat, 11 Dec 2021 06:57:13: 2000000 INFO @ Sat, 11 Dec 2021 06:57:15: 5000000 INFO @ Sat, 11 Dec 2021 06:57:27: 3000000 INFO @ Sat, 11 Dec 2021 06:57:28: 4000000 INFO @ Sat, 11 Dec 2021 06:57:32: 6000000 INFO @ Sat, 11 Dec 2021 06:57:41: 4000000 INFO @ Sat, 11 Dec 2021 06:57:45: 5000000 INFO @ Sat, 11 Dec 2021 06:57:49: 7000000 INFO @ Sat, 11 Dec 2021 06:57:55: 5000000 INFO @ Sat, 11 Dec 2021 06:58:01: 6000000 INFO @ Sat, 11 Dec 2021 06:58:06: 8000000 INFO @ Sat, 11 Dec 2021 06:58:09: 6000000 INFO @ Sat, 11 Dec 2021 06:58:19: 7000000 INFO @ Sat, 11 Dec 2021 06:58:23: 7000000 INFO @ Sat, 11 Dec 2021 06:58:25: 9000000 INFO @ Sat, 11 Dec 2021 06:58:37: 8000000 INFO @ Sat, 11 Dec 2021 06:58:37: 8000000 INFO @ Sat, 11 Dec 2021 06:58:44: 10000000 INFO @ Sat, 11 Dec 2021 06:58:51: 9000000 INFO @ Sat, 11 Dec 2021 06:58:55: 9000000 INFO @ Sat, 11 Dec 2021 06:59:02: 11000000 INFO @ Sat, 11 Dec 2021 06:59:03: 10000000 INFO @ Sat, 11 Dec 2021 06:59:14: 10000000 INFO @ Sat, 11 Dec 2021 06:59:17: 11000000 INFO @ Sat, 11 Dec 2021 06:59:20: 12000000 INFO @ Sat, 11 Dec 2021 06:59:31: 12000000 INFO @ Sat, 11 Dec 2021 06:59:32: 11000000 INFO @ Sat, 11 Dec 2021 06:59:38: 13000000 INFO @ Sat, 11 Dec 2021 06:59:45: 13000000 INFO @ Sat, 11 Dec 2021 06:59:49: 12000000 INFO @ Sat, 11 Dec 2021 06:59:55: 14000000 INFO @ Sat, 11 Dec 2021 06:59:59: 14000000 INFO @ Sat, 11 Dec 2021 07:00:07: 13000000 INFO @ Sat, 11 Dec 2021 07:00:12: 15000000 INFO @ Sat, 11 Dec 2021 07:00:13: 15000000 INFO @ Sat, 11 Dec 2021 07:00:25: 14000000 INFO @ Sat, 11 Dec 2021 07:00:26: 16000000 INFO @ Sat, 11 Dec 2021 07:00:32: 16000000 INFO @ Sat, 11 Dec 2021 07:00:39: 17000000 INFO @ Sat, 11 Dec 2021 07:00:43: 15000000 INFO @ Sat, 11 Dec 2021 07:00:50: 17000000 INFO @ Sat, 11 Dec 2021 07:00:52: 18000000 INFO @ Sat, 11 Dec 2021 07:01:02: 16000000 INFO @ Sat, 11 Dec 2021 07:01:08: 19000000 INFO @ Sat, 11 Dec 2021 07:01:09: 18000000 INFO @ Sat, 11 Dec 2021 07:01:20: 17000000 INFO @ Sat, 11 Dec 2021 07:01:24: 20000000 INFO @ Sat, 11 Dec 2021 07:01:27: 19000000 INFO @ Sat, 11 Dec 2021 07:01:38: 18000000 INFO @ Sat, 11 Dec 2021 07:01:38: 21000000 INFO @ Sat, 11 Dec 2021 07:01:45: 20000000 INFO @ Sat, 11 Dec 2021 07:01:51: 22000000 INFO @ Sat, 11 Dec 2021 07:01:56: 19000000 INFO @ Sat, 11 Dec 2021 07:02:03: 23000000 INFO @ Sat, 11 Dec 2021 07:02:03: 21000000 INFO @ Sat, 11 Dec 2021 07:02:14: 20000000 INFO @ Sat, 11 Dec 2021 07:02:15: 24000000 INFO @ Sat, 11 Dec 2021 07:02:22: 22000000 INFO @ Sat, 11 Dec 2021 07:02:27: 25000000 INFO @ Sat, 11 Dec 2021 07:02:32: 21000000 INFO @ Sat, 11 Dec 2021 07:02:39: 26000000 INFO @ Sat, 11 Dec 2021 07:02:42: 23000000 INFO @ Sat, 11 Dec 2021 07:02:51: 27000000 INFO @ Sat, 11 Dec 2021 07:02:53: 22000000 INFO @ Sat, 11 Dec 2021 07:03:03: 24000000 INFO @ Sat, 11 Dec 2021 07:03:03: 28000000 INFO @ Sat, 11 Dec 2021 07:03:13: 23000000 INFO @ Sat, 11 Dec 2021 07:03:15: 29000000 INFO @ Sat, 11 Dec 2021 07:03:22: 25000000 INFO @ Sat, 11 Dec 2021 07:03:27: 30000000 INFO @ Sat, 11 Dec 2021 07:03:33: 24000000 INFO @ Sat, 11 Dec 2021 07:03:39: 31000000 INFO @ Sat, 11 Dec 2021 07:03:42: 26000000 INFO @ Sat, 11 Dec 2021 07:03:52: 32000000 INFO @ Sat, 11 Dec 2021 07:03:53: 25000000 INFO @ Sat, 11 Dec 2021 07:04:02: 27000000 INFO @ Sat, 11 Dec 2021 07:04:04: 33000000 INFO @ Sat, 11 Dec 2021 07:04:13: 26000000 INFO @ Sat, 11 Dec 2021 07:04:16: 34000000 INFO @ Sat, 11 Dec 2021 07:04:22: 28000000 INFO @ Sat, 11 Dec 2021 07:04:29: 35000000 INFO @ Sat, 11 Dec 2021 07:04:33: 27000000 INFO @ Sat, 11 Dec 2021 07:04:41: 36000000 INFO @ Sat, 11 Dec 2021 07:04:43: 29000000 INFO @ Sat, 11 Dec 2021 07:04:52: 28000000 INFO @ Sat, 11 Dec 2021 07:04:53: 37000000 INFO @ Sat, 11 Dec 2021 07:05:02: 30000000 INFO @ Sat, 11 Dec 2021 07:05:05: 38000000 INFO @ Sat, 11 Dec 2021 07:05:12: 29000000 INFO @ Sat, 11 Dec 2021 07:05:19: 39000000 INFO @ Sat, 11 Dec 2021 07:05:22: 31000000 INFO @ Sat, 11 Dec 2021 07:05:33: 30000000 INFO @ Sat, 11 Dec 2021 07:05:34: 40000000 INFO @ Sat, 11 Dec 2021 07:05:43: 32000000 INFO @ Sat, 11 Dec 2021 07:05:47: 41000000 INFO @ Sat, 11 Dec 2021 07:05:53: 31000000 INFO @ Sat, 11 Dec 2021 07:05:59: 42000000 INFO @ Sat, 11 Dec 2021 07:06:03: 33000000 INFO @ Sat, 11 Dec 2021 07:06:12: 43000000 INFO @ Sat, 11 Dec 2021 07:06:13: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 07:06:23: 34000000 INFO @ Sat, 11 Dec 2021 07:06:27: 44000000 INFO @ Sat, 11 Dec 2021 07:06:33: 33000000 INFO @ Sat, 11 Dec 2021 07:06:40: 45000000 INFO @ Sat, 11 Dec 2021 07:06:43: 35000000 INFO @ Sat, 11 Dec 2021 07:06:52: 46000000 INFO @ Sat, 11 Dec 2021 07:06:53: 34000000 INFO @ Sat, 11 Dec 2021 07:07:02: 36000000 INFO @ Sat, 11 Dec 2021 07:07:05: 47000000 INFO @ Sat, 11 Dec 2021 07:07:13: 35000000 INFO @ Sat, 11 Dec 2021 07:07:17: 48000000 INFO @ Sat, 11 Dec 2021 07:07:22: 37000000 INFO @ Sat, 11 Dec 2021 07:07:29: 49000000 INFO @ Sat, 11 Dec 2021 07:07:32: 36000000 INFO @ Sat, 11 Dec 2021 07:07:41: 50000000 INFO @ Sat, 11 Dec 2021 07:07:42: 38000000 INFO @ Sat, 11 Dec 2021 07:07:52: 37000000 INFO @ Sat, 11 Dec 2021 07:07:53: 51000000 INFO @ Sat, 11 Dec 2021 07:08:01: 39000000 INFO @ Sat, 11 Dec 2021 07:08:05: 52000000 INFO @ Sat, 11 Dec 2021 07:08:12: 38000000 INFO @ Sat, 11 Dec 2021 07:08:17: 53000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 07:08:20: 40000000 INFO @ Sat, 11 Dec 2021 07:08:29: 54000000 INFO @ Sat, 11 Dec 2021 07:08:30: 39000000 INFO @ Sat, 11 Dec 2021 07:08:39: 41000000 INFO @ Sat, 11 Dec 2021 07:08:42: 55000000 INFO @ Sat, 11 Dec 2021 07:08:49: 40000000 INFO @ Sat, 11 Dec 2021 07:08:54: 56000000 INFO @ Sat, 11 Dec 2021 07:08:58: 42000000 INFO @ Sat, 11 Dec 2021 07:09:07: 57000000 INFO @ Sat, 11 Dec 2021 07:09:08: 41000000 INFO @ Sat, 11 Dec 2021 07:09:17: 43000000 INFO @ Sat, 11 Dec 2021 07:09:20: 58000000 INFO @ Sat, 11 Dec 2021 07:09:26: 42000000 INFO @ Sat, 11 Dec 2021 07:09:31: 59000000 INFO @ Sat, 11 Dec 2021 07:09:34: 44000000 INFO @ Sat, 11 Dec 2021 07:09:43: 60000000 INFO @ Sat, 11 Dec 2021 07:09:44: 43000000 INFO @ Sat, 11 Dec 2021 07:09:52: 45000000 INFO @ Sat, 11 Dec 2021 07:09:55: 61000000 INFO @ Sat, 11 Dec 2021 07:09:59: 44000000 INFO @ Sat, 11 Dec 2021 07:10:07: 62000000 INFO @ Sat, 11 Dec 2021 07:10:10: 46000000 INFO @ Sat, 11 Dec 2021 07:10:17: 45000000 INFO @ Sat, 11 Dec 2021 07:10:19: 63000000 INFO @ Sat, 11 Dec 2021 07:10:29: 47000000 INFO @ Sat, 11 Dec 2021 07:10:32: 64000000 INFO @ Sat, 11 Dec 2021 07:10:36: 46000000 INFO @ Sat, 11 Dec 2021 07:10:44: 65000000 INFO @ Sat, 11 Dec 2021 07:10:48: 48000000 INFO @ Sat, 11 Dec 2021 07:10:55: 47000000 INFO @ Sat, 11 Dec 2021 07:10:56: 66000000 INFO @ Sat, 11 Dec 2021 07:11:07: 49000000 INFO @ Sat, 11 Dec 2021 07:11:08: 67000000 INFO @ Sat, 11 Dec 2021 07:11:14: 48000000 INFO @ Sat, 11 Dec 2021 07:11:21: 68000000 INFO @ Sat, 11 Dec 2021 07:11:26: 50000000 INFO @ Sat, 11 Dec 2021 07:11:33: 69000000 INFO @ Sat, 11 Dec 2021 07:11:33: 49000000 INFO @ Sat, 11 Dec 2021 07:11:45: 70000000 INFO @ Sat, 11 Dec 2021 07:11:45: 51000000 INFO @ Sat, 11 Dec 2021 07:11:52: 50000000 INFO @ Sat, 11 Dec 2021 07:11:57: 71000000 INFO @ Sat, 11 Dec 2021 07:12:04: 52000000 INFO @ Sat, 11 Dec 2021 07:12:09: 72000000 INFO @ Sat, 11 Dec 2021 07:12:11: 51000000 INFO @ Sat, 11 Dec 2021 07:12:21: 73000000 INFO @ Sat, 11 Dec 2021 07:12:24: 53000000 INFO @ Sat, 11 Dec 2021 07:12:31: 52000000 INFO @ Sat, 11 Dec 2021 07:12:33: 74000000 INFO @ Sat, 11 Dec 2021 07:12:44: 54000000 INFO @ Sat, 11 Dec 2021 07:12:45: 75000000 INFO @ Sat, 11 Dec 2021 07:12:51: 53000000 INFO @ Sat, 11 Dec 2021 07:12:59: 76000000 INFO @ Sat, 11 Dec 2021 07:13:04: 55000000 INFO @ Sat, 11 Dec 2021 07:13:11: 54000000 INFO @ Sat, 11 Dec 2021 07:13:12: 77000000 INFO @ Sat, 11 Dec 2021 07:13:19: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 07:13:19: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 07:13:19: #1 total tags in treatment: 30427969 INFO @ Sat, 11 Dec 2021 07:13:19: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 07:13:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 07:13:20: #1 tags after filtering in treatment: 21352694 INFO @ Sat, 11 Dec 2021 07:13:20: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 07:13:20: #1 finished! INFO @ Sat, 11 Dec 2021 07:13:20: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 07:13:20: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 07:13:22: #2 number of paired peaks: 1730 INFO @ Sat, 11 Dec 2021 07:13:22: start model_add_line... INFO @ Sat, 11 Dec 2021 07:13:22: start X-correlation... INFO @ Sat, 11 Dec 2021 07:13:22: end of X-cor INFO @ Sat, 11 Dec 2021 07:13:22: #2 finished! INFO @ Sat, 11 Dec 2021 07:13:22: #2 predicted fragment length is 117 bps INFO @ Sat, 11 Dec 2021 07:13:22: #2 alternative fragment length(s) may be 117 bps INFO @ Sat, 11 Dec 2021 07:13:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.20_model.r WARNING @ Sat, 11 Dec 2021 07:13:22: #2 Since the d (117) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 07:13:22: #2 You may need to consider one of the other alternative d(s): 117 WARNING @ Sat, 11 Dec 2021 07:13:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 07:13:22: #3 Call peaks... INFO @ Sat, 11 Dec 2021 07:13:22: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 07:13:23: 56000000 INFO @ Sat, 11 Dec 2021 07:13:31: 55000000 INFO @ Sat, 11 Dec 2021 07:13:43: 57000000 INFO @ Sat, 11 Dec 2021 07:13:51: 56000000 INFO @ Sat, 11 Dec 2021 07:14:02: 58000000 INFO @ Sat, 11 Dec 2021 07:14:11: 57000000 INFO @ Sat, 11 Dec 2021 07:14:20: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:14:20: 59000000 INFO @ Sat, 11 Dec 2021 07:14:30: 58000000 INFO @ Sat, 11 Dec 2021 07:14:38: 60000000 INFO @ Sat, 11 Dec 2021 07:14:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.20_peaks.xls INFO @ Sat, 11 Dec 2021 07:14:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:14:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.20_summits.bed INFO @ Sat, 11 Dec 2021 07:14:48: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6350 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 07:14:49: 59000000 INFO @ Sat, 11 Dec 2021 07:14:57: 61000000 INFO @ Sat, 11 Dec 2021 07:15:08: 60000000 INFO @ Sat, 11 Dec 2021 07:15:16: 62000000 INFO @ Sat, 11 Dec 2021 07:15:27: 61000000 INFO @ Sat, 11 Dec 2021 07:15:35: 63000000 INFO @ Sat, 11 Dec 2021 07:15:46: 62000000 INFO @ Sat, 11 Dec 2021 07:15:55: 64000000 INFO @ Sat, 11 Dec 2021 07:16:06: 63000000 INFO @ Sat, 11 Dec 2021 07:16:13: 65000000 INFO @ Sat, 11 Dec 2021 07:16:24: 64000000 INFO @ Sat, 11 Dec 2021 07:16:32: 66000000 INFO @ Sat, 11 Dec 2021 07:16:43: 65000000 INFO @ Sat, 11 Dec 2021 07:16:51: 67000000 INFO @ Sat, 11 Dec 2021 07:17:01: 66000000 INFO @ Sat, 11 Dec 2021 07:17:10: 68000000 INFO @ Sat, 11 Dec 2021 07:17:20: 67000000 INFO @ Sat, 11 Dec 2021 07:17:29: 69000000 INFO @ Sat, 11 Dec 2021 07:17:40: 68000000 INFO @ Sat, 11 Dec 2021 07:17:47: 70000000 INFO @ Sat, 11 Dec 2021 07:17:58: 69000000 INFO @ Sat, 11 Dec 2021 07:18:05: 71000000 INFO @ Sat, 11 Dec 2021 07:18:17: 70000000 INFO @ Sat, 11 Dec 2021 07:18:23: 72000000 INFO @ Sat, 11 Dec 2021 07:18:35: 71000000 INFO @ Sat, 11 Dec 2021 07:18:41: 73000000 INFO @ Sat, 11 Dec 2021 07:18:54: 72000000 INFO @ Sat, 11 Dec 2021 07:19:00: 74000000 INFO @ Sat, 11 Dec 2021 07:19:12: 73000000 INFO @ Sat, 11 Dec 2021 07:19:18: 75000000 INFO @ Sat, 11 Dec 2021 07:19:30: 74000000 INFO @ Sat, 11 Dec 2021 07:19:37: 76000000 INFO @ Sat, 11 Dec 2021 07:19:49: 75000000 INFO @ Sat, 11 Dec 2021 07:19:56: 77000000 INFO @ Sat, 11 Dec 2021 07:20:07: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 07:20:07: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 07:20:07: #1 total tags in treatment: 30427969 INFO @ Sat, 11 Dec 2021 07:20:07: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 07:20:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 07:20:07: #1 tags after filtering in treatment: 21352694 INFO @ Sat, 11 Dec 2021 07:20:07: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 07:20:07: #1 finished! INFO @ Sat, 11 Dec 2021 07:20:07: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 07:20:07: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 07:20:07: 76000000 INFO @ Sat, 11 Dec 2021 07:20:10: #2 number of paired peaks: 1730 INFO @ Sat, 11 Dec 2021 07:20:10: start model_add_line... INFO @ Sat, 11 Dec 2021 07:20:10: start X-correlation... INFO @ Sat, 11 Dec 2021 07:20:10: end of X-cor INFO @ Sat, 11 Dec 2021 07:20:10: #2 finished! INFO @ Sat, 11 Dec 2021 07:20:10: #2 predicted fragment length is 117 bps INFO @ Sat, 11 Dec 2021 07:20:10: #2 alternative fragment length(s) may be 117 bps INFO @ Sat, 11 Dec 2021 07:20:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.05_model.r WARNING @ Sat, 11 Dec 2021 07:20:10: #2 Since the d (117) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 07:20:10: #2 You may need to consider one of the other alternative d(s): 117 WARNING @ Sat, 11 Dec 2021 07:20:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 07:20:10: #3 Call peaks... INFO @ Sat, 11 Dec 2021 07:20:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 07:20:24: 77000000 INFO @ Sat, 11 Dec 2021 07:20:33: #1 tag size is determined as 119 bps INFO @ Sat, 11 Dec 2021 07:20:33: #1 tag size = 119 INFO @ Sat, 11 Dec 2021 07:20:33: #1 total tags in treatment: 30427969 INFO @ Sat, 11 Dec 2021 07:20:33: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 07:20:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 07:20:34: #1 tags after filtering in treatment: 21352694 INFO @ Sat, 11 Dec 2021 07:20:34: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 07:20:34: #1 finished! INFO @ Sat, 11 Dec 2021 07:20:34: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 07:20:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 07:20:36: #2 number of paired peaks: 1730 INFO @ Sat, 11 Dec 2021 07:20:36: start model_add_line... INFO @ Sat, 11 Dec 2021 07:20:36: start X-correlation... INFO @ Sat, 11 Dec 2021 07:20:36: end of X-cor INFO @ Sat, 11 Dec 2021 07:20:36: #2 finished! INFO @ Sat, 11 Dec 2021 07:20:36: #2 predicted fragment length is 117 bps INFO @ Sat, 11 Dec 2021 07:20:36: #2 alternative fragment length(s) may be 117 bps INFO @ Sat, 11 Dec 2021 07:20:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.10_model.r WARNING @ Sat, 11 Dec 2021 07:20:36: #2 Since the d (117) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 07:20:36: #2 You may need to consider one of the other alternative d(s): 117 WARNING @ Sat, 11 Dec 2021 07:20:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 07:20:36: #3 Call peaks... INFO @ Sat, 11 Dec 2021 07:20:36: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 07:21:11: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:21:37: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:21:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.05_peaks.xls INFO @ Sat, 11 Dec 2021 07:21:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:21:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.05_summits.bed INFO @ Sat, 11 Dec 2021 07:21:42: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (13695 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 07:22:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.10_peaks.xls INFO @ Sat, 11 Dec 2021 07:22:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:22:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978785/ERX3978785.10_summits.bed INFO @ Sat, 11 Dec 2021 07:22:07: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (10506 records, 4 fields): 15 millis CompletedMACS2peakCalling