Job ID = 14161177 SRX = SRX9025733 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 04:29:51 316741414 reads; of these: 316741414 (100.00%) were paired; of these: 97442499 (30.76%) aligned concordantly 0 times 194662415 (61.46%) aligned concordantly exactly 1 time 24636500 (7.78%) aligned concordantly >1 times ---- 97442499 pairs aligned concordantly 0 times; of these: 23537495 (24.16%) aligned discordantly 1 time ---- 73905004 pairs aligned 0 times concordantly or discordantly; of these: 147810008 mates make up the pairs; of these: 106837849 (72.28%) aligned 0 times 29684693 (20.08%) aligned exactly 1 time 11287466 (7.64%) aligned >1 times 83.13% overall alignment rate Time searching: 04:29:51 Overall time: 04:29:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 216 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 221919385 / 240628313 = 0.9222 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 12:20:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 12:20:42: #1 read tag files... INFO @ Thu, 09 Dec 2021 12:20:42: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 12:20:48: 1000000 INFO @ Thu, 09 Dec 2021 12:20:53: 2000000 INFO @ Thu, 09 Dec 2021 12:20:59: 3000000 INFO @ Thu, 09 Dec 2021 12:21:04: 4000000 INFO @ Thu, 09 Dec 2021 12:21:10: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 12:21:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 12:21:12: #1 read tag files... INFO @ Thu, 09 Dec 2021 12:21:12: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 12:21:16: 6000000 INFO @ Thu, 09 Dec 2021 12:21:18: 1000000 INFO @ Thu, 09 Dec 2021 12:21:22: 7000000 INFO @ Thu, 09 Dec 2021 12:21:25: 2000000 INFO @ Thu, 09 Dec 2021 12:21:29: 8000000 INFO @ Thu, 09 Dec 2021 12:21:31: 3000000 INFO @ Thu, 09 Dec 2021 12:21:35: 9000000 INFO @ Thu, 09 Dec 2021 12:21:38: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 12:21:42: 10000000 INFO @ Thu, 09 Dec 2021 12:21:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 12:21:42: #1 read tag files... INFO @ Thu, 09 Dec 2021 12:21:42: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 12:21:45: 5000000 INFO @ Thu, 09 Dec 2021 12:21:49: 11000000 INFO @ Thu, 09 Dec 2021 12:21:50: 1000000 INFO @ Thu, 09 Dec 2021 12:21:52: 6000000 INFO @ Thu, 09 Dec 2021 12:21:56: 12000000 INFO @ Thu, 09 Dec 2021 12:21:59: 2000000 INFO @ Thu, 09 Dec 2021 12:21:59: 7000000 INFO @ Thu, 09 Dec 2021 12:22:03: 13000000 INFO @ Thu, 09 Dec 2021 12:22:07: 8000000 INFO @ Thu, 09 Dec 2021 12:22:07: 3000000 INFO @ Thu, 09 Dec 2021 12:22:10: 14000000 INFO @ Thu, 09 Dec 2021 12:22:14: 9000000 INFO @ Thu, 09 Dec 2021 12:22:15: 4000000 INFO @ Thu, 09 Dec 2021 12:22:17: 15000000 INFO @ Thu, 09 Dec 2021 12:22:21: 10000000 INFO @ Thu, 09 Dec 2021 12:22:24: 5000000 INFO @ Thu, 09 Dec 2021 12:22:24: 16000000 INFO @ Thu, 09 Dec 2021 12:22:28: 11000000 INFO @ Thu, 09 Dec 2021 12:22:32: 17000000 INFO @ Thu, 09 Dec 2021 12:22:32: 6000000 INFO @ Thu, 09 Dec 2021 12:22:35: 12000000 INFO @ Thu, 09 Dec 2021 12:22:39: 18000000 INFO @ Thu, 09 Dec 2021 12:22:40: 7000000 INFO @ Thu, 09 Dec 2021 12:22:42: 13000000 INFO @ Thu, 09 Dec 2021 12:22:46: 19000000 INFO @ Thu, 09 Dec 2021 12:22:49: 8000000 INFO @ Thu, 09 Dec 2021 12:22:49: 14000000 INFO @ Thu, 09 Dec 2021 12:22:53: 20000000 INFO @ Thu, 09 Dec 2021 12:22:57: 15000000 INFO @ Thu, 09 Dec 2021 12:22:57: 9000000 INFO @ Thu, 09 Dec 2021 12:23:00: 21000000 INFO @ Thu, 09 Dec 2021 12:23:04: 16000000 INFO @ Thu, 09 Dec 2021 12:23:06: 10000000 INFO @ Thu, 09 Dec 2021 12:23:07: 22000000 INFO @ Thu, 09 Dec 2021 12:23:10: 17000000 INFO @ Thu, 09 Dec 2021 12:23:14: 23000000 INFO @ Thu, 09 Dec 2021 12:23:14: 11000000 INFO @ Thu, 09 Dec 2021 12:23:17: 18000000 INFO @ Thu, 09 Dec 2021 12:23:21: 24000000 INFO @ Thu, 09 Dec 2021 12:23:23: 12000000 INFO @ Thu, 09 Dec 2021 12:23:24: 19000000 INFO @ Thu, 09 Dec 2021 12:23:28: 25000000 INFO @ Thu, 09 Dec 2021 12:23:31: 13000000 INFO @ Thu, 09 Dec 2021 12:23:32: 20000000 INFO @ Thu, 09 Dec 2021 12:23:36: 26000000 INFO @ Thu, 09 Dec 2021 12:23:39: 21000000 INFO @ Thu, 09 Dec 2021 12:23:39: 14000000 INFO @ Thu, 09 Dec 2021 12:23:43: 27000000 INFO @ Thu, 09 Dec 2021 12:23:46: 22000000 INFO @ Thu, 09 Dec 2021 12:23:48: 15000000 INFO @ Thu, 09 Dec 2021 12:23:50: 28000000 INFO @ Thu, 09 Dec 2021 12:23:54: 23000000 INFO @ Thu, 09 Dec 2021 12:23:56: 16000000 INFO @ Thu, 09 Dec 2021 12:23:58: 29000000 INFO @ Thu, 09 Dec 2021 12:24:01: 24000000 INFO @ Thu, 09 Dec 2021 12:24:04: 17000000 INFO @ Thu, 09 Dec 2021 12:24:05: 30000000 INFO @ Thu, 09 Dec 2021 12:24:08: 25000000 INFO @ Thu, 09 Dec 2021 12:24:12: 18000000 INFO @ Thu, 09 Dec 2021 12:24:13: 31000000 INFO @ Thu, 09 Dec 2021 12:24:16: 26000000 INFO @ Thu, 09 Dec 2021 12:24:20: 19000000 INFO @ Thu, 09 Dec 2021 12:24:20: 32000000 INFO @ Thu, 09 Dec 2021 12:24:23: 27000000 INFO @ Thu, 09 Dec 2021 12:24:28: 33000000 INFO @ Thu, 09 Dec 2021 12:24:28: 20000000 INFO @ Thu, 09 Dec 2021 12:24:30: 28000000 INFO @ Thu, 09 Dec 2021 12:24:35: 34000000 INFO @ Thu, 09 Dec 2021 12:24:37: 21000000 INFO @ Thu, 09 Dec 2021 12:24:38: 29000000 INFO @ Thu, 09 Dec 2021 12:24:42: 35000000 INFO @ Thu, 09 Dec 2021 12:24:45: 22000000 INFO @ Thu, 09 Dec 2021 12:24:45: 30000000 INFO @ Thu, 09 Dec 2021 12:24:50: 36000000 INFO @ Thu, 09 Dec 2021 12:24:53: 31000000 INFO @ Thu, 09 Dec 2021 12:24:54: 23000000 INFO @ Thu, 09 Dec 2021 12:24:57: 37000000 INFO @ Thu, 09 Dec 2021 12:25:01: 32000000 INFO @ Thu, 09 Dec 2021 12:25:02: 24000000 INFO @ Thu, 09 Dec 2021 12:25:05: 38000000 INFO @ Thu, 09 Dec 2021 12:25:08: 33000000 INFO @ Thu, 09 Dec 2021 12:25:10: 25000000 INFO @ Thu, 09 Dec 2021 12:25:13: 39000000 INFO @ Thu, 09 Dec 2021 12:25:16: 34000000 INFO @ Thu, 09 Dec 2021 12:25:19: 26000000 INFO @ Thu, 09 Dec 2021 12:25:20: 40000000 INFO @ Thu, 09 Dec 2021 12:25:23: 35000000 INFO @ Thu, 09 Dec 2021 12:25:27: 27000000 INFO @ Thu, 09 Dec 2021 12:25:28: 41000000 INFO @ Thu, 09 Dec 2021 12:25:30: 36000000 INFO @ Thu, 09 Dec 2021 12:25:35: 28000000 INFO @ Thu, 09 Dec 2021 12:25:35: 42000000 INFO @ Thu, 09 Dec 2021 12:25:38: 37000000 INFO @ Thu, 09 Dec 2021 12:25:43: 43000000 INFO @ Thu, 09 Dec 2021 12:25:44: 29000000 INFO @ Thu, 09 Dec 2021 12:25:45: 38000000 INFO @ Thu, 09 Dec 2021 12:25:50: 44000000 INFO @ Thu, 09 Dec 2021 12:25:52: 30000000 INFO @ Thu, 09 Dec 2021 12:25:52: 39000000 INFO @ Thu, 09 Dec 2021 12:25:58: 45000000 INFO @ Thu, 09 Dec 2021 12:26:00: 40000000 INFO @ Thu, 09 Dec 2021 12:26:00: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 09 Dec 2021 12:26:05: 46000000 INFO @ Thu, 09 Dec 2021 12:26:07: 41000000 INFO @ Thu, 09 Dec 2021 12:26:08: 32000000 INFO @ Thu, 09 Dec 2021 12:26:13: 47000000 INFO @ Thu, 09 Dec 2021 12:26:15: 42000000 INFO @ Thu, 09 Dec 2021 12:26:17: 33000000 INFO @ Thu, 09 Dec 2021 12:26:21: 48000000 INFO @ Thu, 09 Dec 2021 12:26:23: 43000000 INFO @ Thu, 09 Dec 2021 12:26:25: 34000000 INFO @ Thu, 09 Dec 2021 12:26:28: 49000000 INFO @ Thu, 09 Dec 2021 12:26:30: 44000000 INFO @ Thu, 09 Dec 2021 12:26:33: 35000000 INFO @ Thu, 09 Dec 2021 12:26:36: 50000000 INFO @ Thu, 09 Dec 2021 12:26:38: 45000000 INFO @ Thu, 09 Dec 2021 12:26:41: 36000000 BigWig に変換しました。 INFO @ Thu, 09 Dec 2021 12:26:43: 51000000 INFO @ Thu, 09 Dec 2021 12:26:45: 46000000 INFO @ Thu, 09 Dec 2021 12:26:49: 37000000 INFO @ Thu, 09 Dec 2021 12:26:51: 52000000 INFO @ Thu, 09 Dec 2021 12:26:53: 47000000 INFO @ Thu, 09 Dec 2021 12:26:57: 38000000 INFO @ Thu, 09 Dec 2021 12:26:58: 53000000 INFO @ Thu, 09 Dec 2021 12:27:00: 48000000 INFO @ Thu, 09 Dec 2021 12:27:06: 54000000 INFO @ Thu, 09 Dec 2021 12:27:06: 39000000 INFO @ Thu, 09 Dec 2021 12:27:08: 49000000 INFO @ Thu, 09 Dec 2021 12:27:13: 55000000 INFO @ Thu, 09 Dec 2021 12:27:14: 40000000 INFO @ Thu, 09 Dec 2021 12:27:15: 50000000 INFO @ Thu, 09 Dec 2021 12:27:20: 56000000 INFO @ Thu, 09 Dec 2021 12:27:22: 51000000 INFO @ Thu, 09 Dec 2021 12:27:23: 41000000 INFO @ Thu, 09 Dec 2021 12:27:27: 57000000 INFO @ Thu, 09 Dec 2021 12:27:30: 52000000 INFO @ Thu, 09 Dec 2021 12:27:31: 42000000 INFO @ Thu, 09 Dec 2021 12:27:35: 58000000 INFO @ Thu, 09 Dec 2021 12:27:37: 53000000 INFO @ Thu, 09 Dec 2021 12:27:40: 43000000 INFO @ Thu, 09 Dec 2021 12:27:42: 59000000 INFO @ Thu, 09 Dec 2021 12:27:44: 54000000 INFO @ Thu, 09 Dec 2021 12:27:48: 44000000 INFO @ Thu, 09 Dec 2021 12:27:49: 60000000 INFO @ Thu, 09 Dec 2021 12:27:51: 55000000 INFO @ Thu, 09 Dec 2021 12:27:56: 61000000 INFO @ Thu, 09 Dec 2021 12:27:57: 45000000 INFO @ Thu, 09 Dec 2021 12:27:59: 56000000 INFO @ Thu, 09 Dec 2021 12:28:04: 62000000 INFO @ Thu, 09 Dec 2021 12:28:05: 46000000 INFO @ Thu, 09 Dec 2021 12:28:06: 57000000 INFO @ Thu, 09 Dec 2021 12:28:11: 63000000 INFO @ Thu, 09 Dec 2021 12:28:13: 58000000 INFO @ Thu, 09 Dec 2021 12:28:14: 47000000 INFO @ Thu, 09 Dec 2021 12:28:18: 64000000 INFO @ Thu, 09 Dec 2021 12:28:20: 59000000 INFO @ Thu, 09 Dec 2021 12:28:22: 48000000 INFO @ Thu, 09 Dec 2021 12:28:25: 65000000 INFO @ Thu, 09 Dec 2021 12:28:27: 60000000 INFO @ Thu, 09 Dec 2021 12:28:31: 49000000 INFO @ Thu, 09 Dec 2021 12:28:32: 66000000 INFO @ Thu, 09 Dec 2021 12:28:34: 61000000 INFO @ Thu, 09 Dec 2021 12:28:39: 50000000 INFO @ Thu, 09 Dec 2021 12:28:40: 67000000 INFO @ Thu, 09 Dec 2021 12:28:42: 62000000 INFO @ Thu, 09 Dec 2021 12:28:47: 68000000 INFO @ Thu, 09 Dec 2021 12:28:48: 51000000 INFO @ Thu, 09 Dec 2021 12:28:49: 63000000 INFO @ Thu, 09 Dec 2021 12:28:54: 69000000 INFO @ Thu, 09 Dec 2021 12:28:56: 64000000 INFO @ Thu, 09 Dec 2021 12:28:56: 52000000 INFO @ Thu, 09 Dec 2021 12:29:01: 70000000 INFO @ Thu, 09 Dec 2021 12:29:03: 65000000 INFO @ Thu, 09 Dec 2021 12:29:05: 53000000 INFO @ Thu, 09 Dec 2021 12:29:08: 71000000 INFO @ Thu, 09 Dec 2021 12:29:10: 66000000 INFO @ Thu, 09 Dec 2021 12:29:13: 54000000 INFO @ Thu, 09 Dec 2021 12:29:16: 72000000 INFO @ Thu, 09 Dec 2021 12:29:18: 67000000 INFO @ Thu, 09 Dec 2021 12:29:21: 55000000 INFO @ Thu, 09 Dec 2021 12:29:23: 73000000 INFO @ Thu, 09 Dec 2021 12:29:25: 68000000 INFO @ Thu, 09 Dec 2021 12:29:29: 56000000 INFO @ Thu, 09 Dec 2021 12:29:30: 74000000 INFO @ Thu, 09 Dec 2021 12:29:32: 69000000 INFO @ Thu, 09 Dec 2021 12:29:37: 75000000 INFO @ Thu, 09 Dec 2021 12:29:38: 57000000 INFO @ Thu, 09 Dec 2021 12:29:39: 70000000 INFO @ Thu, 09 Dec 2021 12:29:44: 76000000 INFO @ Thu, 09 Dec 2021 12:29:46: 58000000 INFO @ Thu, 09 Dec 2021 12:29:47: 71000000 INFO @ Thu, 09 Dec 2021 12:29:51: 77000000 INFO @ Thu, 09 Dec 2021 12:29:54: 72000000 INFO @ Thu, 09 Dec 2021 12:29:54: 59000000 INFO @ Thu, 09 Dec 2021 12:29:59: 78000000 INFO @ Thu, 09 Dec 2021 12:30:01: 73000000 INFO @ Thu, 09 Dec 2021 12:30:02: 60000000 INFO @ Thu, 09 Dec 2021 12:30:06: 79000000 INFO @ Thu, 09 Dec 2021 12:30:08: 74000000 INFO @ Thu, 09 Dec 2021 12:30:10: 61000000 INFO @ Thu, 09 Dec 2021 12:30:13: 80000000 INFO @ Thu, 09 Dec 2021 12:30:16: 75000000 INFO @ Thu, 09 Dec 2021 12:30:18: 62000000 INFO @ Thu, 09 Dec 2021 12:30:20: 81000000 INFO @ Thu, 09 Dec 2021 12:30:23: 76000000 INFO @ Thu, 09 Dec 2021 12:30:26: 63000000 INFO @ Thu, 09 Dec 2021 12:30:27: 82000000 INFO @ Thu, 09 Dec 2021 12:30:30: 77000000 INFO @ Thu, 09 Dec 2021 12:30:33: #1 tag size is determined as 75 bps INFO @ Thu, 09 Dec 2021 12:30:33: #1 tag size = 75 INFO @ Thu, 09 Dec 2021 12:30:33: #1 total tags in treatment: 18349299 INFO @ Thu, 09 Dec 2021 12:30:33: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 12:30:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 12:30:33: #1 tags after filtering in treatment: 9256926 INFO @ Thu, 09 Dec 2021 12:30:33: #1 Redundant rate of treatment: 0.50 INFO @ Thu, 09 Dec 2021 12:30:33: #1 finished! INFO @ Thu, 09 Dec 2021 12:30:33: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 12:30:33: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 12:30:34: #2 number of paired peaks: 1517 INFO @ Thu, 09 Dec 2021 12:30:34: start model_add_line... INFO @ Thu, 09 Dec 2021 12:30:34: start X-correlation... INFO @ Thu, 09 Dec 2021 12:30:34: end of X-cor INFO @ Thu, 09 Dec 2021 12:30:34: #2 finished! INFO @ Thu, 09 Dec 2021 12:30:34: #2 predicted fragment length is 99 bps INFO @ Thu, 09 Dec 2021 12:30:34: #2 alternative fragment length(s) may be 99 bps INFO @ Thu, 09 Dec 2021 12:30:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.05_model.r WARNING @ Thu, 09 Dec 2021 12:30:34: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 12:30:34: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Thu, 09 Dec 2021 12:30:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 12:30:34: #3 Call peaks... INFO @ Thu, 09 Dec 2021 12:30:34: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 12:30:34: 64000000 INFO @ Thu, 09 Dec 2021 12:30:37: 78000000 INFO @ Thu, 09 Dec 2021 12:30:42: 65000000 INFO @ Thu, 09 Dec 2021 12:30:44: 79000000 INFO @ Thu, 09 Dec 2021 12:30:51: 66000000 INFO @ Thu, 09 Dec 2021 12:30:51: 80000000 INFO @ Thu, 09 Dec 2021 12:30:53: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 12:30:58: 81000000 INFO @ Thu, 09 Dec 2021 12:30:59: 67000000 INFO @ Thu, 09 Dec 2021 12:31:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.05_peaks.xls INFO @ Thu, 09 Dec 2021 12:31:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.05_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 12:31:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.05_summits.bed INFO @ Thu, 09 Dec 2021 12:31:03: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (9920 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 12:31:04: 82000000 INFO @ Thu, 09 Dec 2021 12:31:07: 68000000 INFO @ Thu, 09 Dec 2021 12:31:10: #1 tag size is determined as 75 bps INFO @ Thu, 09 Dec 2021 12:31:10: #1 tag size = 75 INFO @ Thu, 09 Dec 2021 12:31:10: #1 total tags in treatment: 18349299 INFO @ Thu, 09 Dec 2021 12:31:10: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 12:31:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 12:31:10: #1 tags after filtering in treatment: 9256926 INFO @ Thu, 09 Dec 2021 12:31:10: #1 Redundant rate of treatment: 0.50 INFO @ Thu, 09 Dec 2021 12:31:10: #1 finished! INFO @ Thu, 09 Dec 2021 12:31:10: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 12:31:10: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 12:31:11: #2 number of paired peaks: 1517 INFO @ Thu, 09 Dec 2021 12:31:11: start model_add_line... INFO @ Thu, 09 Dec 2021 12:31:11: start X-correlation... INFO @ Thu, 09 Dec 2021 12:31:11: end of X-cor INFO @ Thu, 09 Dec 2021 12:31:11: #2 finished! INFO @ Thu, 09 Dec 2021 12:31:11: #2 predicted fragment length is 99 bps INFO @ Thu, 09 Dec 2021 12:31:11: #2 alternative fragment length(s) may be 99 bps INFO @ Thu, 09 Dec 2021 12:31:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.10_model.r WARNING @ Thu, 09 Dec 2021 12:31:11: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 12:31:11: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Thu, 09 Dec 2021 12:31:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 12:31:11: #3 Call peaks... INFO @ Thu, 09 Dec 2021 12:31:11: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 12:31:15: 69000000 INFO @ Thu, 09 Dec 2021 12:31:22: 70000000 INFO @ Thu, 09 Dec 2021 12:31:30: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 12:31:30: 71000000 INFO @ Thu, 09 Dec 2021 12:31:37: 72000000 INFO @ Thu, 09 Dec 2021 12:31:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.10_peaks.xls INFO @ Thu, 09 Dec 2021 12:31:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.10_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 12:31:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.10_summits.bed INFO @ Thu, 09 Dec 2021 12:31:39: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (5101 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 12:31:45: 73000000 INFO @ Thu, 09 Dec 2021 12:31:52: 74000000 INFO @ Thu, 09 Dec 2021 12:31:59: 75000000 INFO @ Thu, 09 Dec 2021 12:32:06: 76000000 INFO @ Thu, 09 Dec 2021 12:32:13: 77000000 INFO @ Thu, 09 Dec 2021 12:32:20: 78000000 INFO @ Thu, 09 Dec 2021 12:32:27: 79000000 INFO @ Thu, 09 Dec 2021 12:32:34: 80000000 INFO @ Thu, 09 Dec 2021 12:32:41: 81000000 INFO @ Thu, 09 Dec 2021 12:32:48: 82000000 INFO @ Thu, 09 Dec 2021 12:32:54: #1 tag size is determined as 75 bps INFO @ Thu, 09 Dec 2021 12:32:54: #1 tag size = 75 INFO @ Thu, 09 Dec 2021 12:32:54: #1 total tags in treatment: 18349299 INFO @ Thu, 09 Dec 2021 12:32:54: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 12:32:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 12:32:54: #1 tags after filtering in treatment: 9256926 INFO @ Thu, 09 Dec 2021 12:32:54: #1 Redundant rate of treatment: 0.50 INFO @ Thu, 09 Dec 2021 12:32:54: #1 finished! INFO @ Thu, 09 Dec 2021 12:32:54: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 12:32:54: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 12:32:55: #2 number of paired peaks: 1517 INFO @ Thu, 09 Dec 2021 12:32:55: start model_add_line... INFO @ Thu, 09 Dec 2021 12:32:55: start X-correlation... INFO @ Thu, 09 Dec 2021 12:32:55: end of X-cor INFO @ Thu, 09 Dec 2021 12:32:55: #2 finished! INFO @ Thu, 09 Dec 2021 12:32:55: #2 predicted fragment length is 99 bps INFO @ Thu, 09 Dec 2021 12:32:55: #2 alternative fragment length(s) may be 99 bps INFO @ Thu, 09 Dec 2021 12:32:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.20_model.r WARNING @ Thu, 09 Dec 2021 12:32:55: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 12:32:55: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Thu, 09 Dec 2021 12:32:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 12:32:55: #3 Call peaks... INFO @ Thu, 09 Dec 2021 12:32:55: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 12:33:13: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 12:33:22: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.20_peaks.xls INFO @ Thu, 09 Dec 2021 12:33:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.20_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 12:33:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX9025733/SRX9025733.20_summits.bed INFO @ Thu, 09 Dec 2021 12:33:22: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (1743 records, 4 fields): 3 millis CompletedMACS2peakCalling