Job ID = 14158189 SRX = SRX8948256 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:32 44350664 reads; of these: 44350664 (100.00%) were paired; of these: 10698878 (24.12%) aligned concordantly 0 times 28787630 (64.91%) aligned concordantly exactly 1 time 4864156 (10.97%) aligned concordantly >1 times ---- 10698878 pairs aligned concordantly 0 times; of these: 92605 (0.87%) aligned discordantly 1 time ---- 10606273 pairs aligned 0 times concordantly or discordantly; of these: 21212546 mates make up the pairs; of these: 20923304 (98.64%) aligned 0 times 191926 (0.90%) aligned exactly 1 time 97316 (0.46%) aligned >1 times 76.41% overall alignment rate Time searching: 00:48:32 Overall time: 00:48:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 10680329 / 33139889 = 0.3223 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:47:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:47:30: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:47:30: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:47:38: 1000000 INFO @ Wed, 08 Dec 2021 15:47:47: 2000000 INFO @ Wed, 08 Dec 2021 15:47:56: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:48:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:48:00: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:48:00: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:48:04: 4000000 INFO @ Wed, 08 Dec 2021 15:48:09: 1000000 INFO @ Wed, 08 Dec 2021 15:48:13: 5000000 INFO @ Wed, 08 Dec 2021 15:48:19: 2000000 INFO @ Wed, 08 Dec 2021 15:48:22: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:48:28: 3000000 INFO @ Wed, 08 Dec 2021 15:48:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:48:30: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:48:30: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:48:31: 7000000 INFO @ Wed, 08 Dec 2021 15:48:37: 4000000 INFO @ Wed, 08 Dec 2021 15:48:41: 8000000 INFO @ Wed, 08 Dec 2021 15:48:42: 1000000 INFO @ Wed, 08 Dec 2021 15:48:47: 5000000 INFO @ Wed, 08 Dec 2021 15:48:50: 9000000 INFO @ Wed, 08 Dec 2021 15:48:53: 2000000 INFO @ Wed, 08 Dec 2021 15:48:56: 6000000 INFO @ Wed, 08 Dec 2021 15:48:59: 10000000 INFO @ Wed, 08 Dec 2021 15:49:05: 3000000 INFO @ Wed, 08 Dec 2021 15:49:06: 7000000 INFO @ Wed, 08 Dec 2021 15:49:09: 11000000 INFO @ Wed, 08 Dec 2021 15:49:15: 4000000 INFO @ Wed, 08 Dec 2021 15:49:16: 8000000 INFO @ Wed, 08 Dec 2021 15:49:18: 12000000 INFO @ Wed, 08 Dec 2021 15:49:25: 9000000 INFO @ Wed, 08 Dec 2021 15:49:27: 5000000 INFO @ Wed, 08 Dec 2021 15:49:27: 13000000 INFO @ Wed, 08 Dec 2021 15:49:35: 10000000 INFO @ Wed, 08 Dec 2021 15:49:36: 14000000 INFO @ Wed, 08 Dec 2021 15:49:38: 6000000 INFO @ Wed, 08 Dec 2021 15:49:44: 11000000 INFO @ Wed, 08 Dec 2021 15:49:45: 15000000 INFO @ Wed, 08 Dec 2021 15:49:50: 7000000 INFO @ Wed, 08 Dec 2021 15:49:53: 16000000 INFO @ Wed, 08 Dec 2021 15:49:54: 12000000 INFO @ Wed, 08 Dec 2021 15:50:02: 8000000 INFO @ Wed, 08 Dec 2021 15:50:02: 17000000 INFO @ Wed, 08 Dec 2021 15:50:03: 13000000 INFO @ Wed, 08 Dec 2021 15:50:11: 18000000 INFO @ Wed, 08 Dec 2021 15:50:12: 14000000 INFO @ Wed, 08 Dec 2021 15:50:13: 9000000 INFO @ Wed, 08 Dec 2021 15:50:20: 19000000 INFO @ Wed, 08 Dec 2021 15:50:21: 15000000 INFO @ Wed, 08 Dec 2021 15:50:24: 10000000 INFO @ Wed, 08 Dec 2021 15:50:29: 20000000 INFO @ Wed, 08 Dec 2021 15:50:30: 16000000 INFO @ Wed, 08 Dec 2021 15:50:35: 11000000 INFO @ Wed, 08 Dec 2021 15:50:38: 21000000 INFO @ Wed, 08 Dec 2021 15:50:40: 17000000 INFO @ Wed, 08 Dec 2021 15:50:46: 12000000 INFO @ Wed, 08 Dec 2021 15:50:47: 22000000 INFO @ Wed, 08 Dec 2021 15:50:48: 18000000 INFO @ Wed, 08 Dec 2021 15:50:55: 23000000 INFO @ Wed, 08 Dec 2021 15:50:58: 19000000 INFO @ Wed, 08 Dec 2021 15:50:58: 13000000 INFO @ Wed, 08 Dec 2021 15:51:03: 24000000 INFO @ Wed, 08 Dec 2021 15:51:07: 20000000 INFO @ Wed, 08 Dec 2021 15:51:08: 14000000 INFO @ Wed, 08 Dec 2021 15:51:11: 25000000 INFO @ Wed, 08 Dec 2021 15:51:16: 21000000 INFO @ Wed, 08 Dec 2021 15:51:19: 15000000 INFO @ Wed, 08 Dec 2021 15:51:20: 26000000 INFO @ Wed, 08 Dec 2021 15:51:25: 22000000 INFO @ Wed, 08 Dec 2021 15:51:29: 27000000 INFO @ Wed, 08 Dec 2021 15:51:30: 16000000 INFO @ Wed, 08 Dec 2021 15:51:34: 23000000 INFO @ Wed, 08 Dec 2021 15:51:37: 28000000 INFO @ Wed, 08 Dec 2021 15:51:40: 17000000 INFO @ Wed, 08 Dec 2021 15:51:43: 24000000 INFO @ Wed, 08 Dec 2021 15:51:46: 29000000 INFO @ Wed, 08 Dec 2021 15:51:51: 18000000 INFO @ Wed, 08 Dec 2021 15:51:52: 25000000 INFO @ Wed, 08 Dec 2021 15:51:54: 30000000 INFO @ Wed, 08 Dec 2021 15:52:01: 26000000 INFO @ Wed, 08 Dec 2021 15:52:02: 19000000 INFO @ Wed, 08 Dec 2021 15:52:02: 31000000 INFO @ Wed, 08 Dec 2021 15:52:10: 32000000 INFO @ Wed, 08 Dec 2021 15:52:10: 27000000 INFO @ Wed, 08 Dec 2021 15:52:12: 20000000 INFO @ Wed, 08 Dec 2021 15:52:18: 33000000 INFO @ Wed, 08 Dec 2021 15:52:19: 28000000 INFO @ Wed, 08 Dec 2021 15:52:22: 21000000 INFO @ Wed, 08 Dec 2021 15:52:26: 34000000 INFO @ Wed, 08 Dec 2021 15:52:28: 29000000 INFO @ Wed, 08 Dec 2021 15:52:33: 22000000 INFO @ Wed, 08 Dec 2021 15:52:35: 35000000 INFO @ Wed, 08 Dec 2021 15:52:37: 30000000 INFO @ Wed, 08 Dec 2021 15:52:43: 23000000 INFO @ Wed, 08 Dec 2021 15:52:44: 36000000 INFO @ Wed, 08 Dec 2021 15:52:47: 31000000 INFO @ Wed, 08 Dec 2021 15:52:53: 37000000 INFO @ Wed, 08 Dec 2021 15:52:53: 24000000 INFO @ Wed, 08 Dec 2021 15:52:56: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 15:53:01: 38000000 INFO @ Wed, 08 Dec 2021 15:53:02: 25000000 INFO @ Wed, 08 Dec 2021 15:53:04: 33000000 INFO @ Wed, 08 Dec 2021 15:53:09: 39000000 INFO @ Wed, 08 Dec 2021 15:53:12: 26000000 INFO @ Wed, 08 Dec 2021 15:53:13: 34000000 INFO @ Wed, 08 Dec 2021 15:53:18: 40000000 INFO @ Wed, 08 Dec 2021 15:53:21: 27000000 INFO @ Wed, 08 Dec 2021 15:53:22: 35000000 INFO @ Wed, 08 Dec 2021 15:53:27: 41000000 INFO @ Wed, 08 Dec 2021 15:53:30: 28000000 INFO @ Wed, 08 Dec 2021 15:53:30: 36000000 INFO @ Wed, 08 Dec 2021 15:53:35: 42000000 INFO @ Wed, 08 Dec 2021 15:53:39: 37000000 INFO @ Wed, 08 Dec 2021 15:53:39: 29000000 INFO @ Wed, 08 Dec 2021 15:53:43: 43000000 INFO @ Wed, 08 Dec 2021 15:53:48: 38000000 INFO @ Wed, 08 Dec 2021 15:53:49: 30000000 INFO @ Wed, 08 Dec 2021 15:53:51: 44000000 INFO @ Wed, 08 Dec 2021 15:53:57: 39000000 INFO @ Wed, 08 Dec 2021 15:53:58: 31000000 INFO @ Wed, 08 Dec 2021 15:53:59: 45000000 INFO @ Wed, 08 Dec 2021 15:54:06: 40000000 INFO @ Wed, 08 Dec 2021 15:54:07: 46000000 INFO @ Wed, 08 Dec 2021 15:54:07: 32000000 INFO @ Wed, 08 Dec 2021 15:54:11: #1 tag size is determined as 75 bps INFO @ Wed, 08 Dec 2021 15:54:11: #1 tag size = 75 INFO @ Wed, 08 Dec 2021 15:54:11: #1 total tags in treatment: 22975507 INFO @ Wed, 08 Dec 2021 15:54:11: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:54:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:54:11: #1 tags after filtering in treatment: 20612514 INFO @ Wed, 08 Dec 2021 15:54:11: #1 Redundant rate of treatment: 0.10 INFO @ Wed, 08 Dec 2021 15:54:11: #1 finished! INFO @ Wed, 08 Dec 2021 15:54:11: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:54:11: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:54:13: #2 number of paired peaks: 257 WARNING @ Wed, 08 Dec 2021 15:54:13: Fewer paired peaks (257) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 257 pairs to build model! INFO @ Wed, 08 Dec 2021 15:54:13: start model_add_line... INFO @ Wed, 08 Dec 2021 15:54:13: start X-correlation... INFO @ Wed, 08 Dec 2021 15:54:13: end of X-cor INFO @ Wed, 08 Dec 2021 15:54:13: #2 finished! INFO @ Wed, 08 Dec 2021 15:54:13: #2 predicted fragment length is 98 bps INFO @ Wed, 08 Dec 2021 15:54:13: #2 alternative fragment length(s) may be 3,98,121 bps INFO @ Wed, 08 Dec 2021 15:54:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.05_model.r WARNING @ Wed, 08 Dec 2021 15:54:13: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 15:54:13: #2 You may need to consider one of the other alternative d(s): 3,98,121 WARNING @ Wed, 08 Dec 2021 15:54:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 15:54:13: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:54:13: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:54:14: 41000000 INFO @ Wed, 08 Dec 2021 15:54:16: 33000000 INFO @ Wed, 08 Dec 2021 15:54:23: 42000000 INFO @ Wed, 08 Dec 2021 15:54:25: 34000000 INFO @ Wed, 08 Dec 2021 15:54:32: 43000000 INFO @ Wed, 08 Dec 2021 15:54:34: 35000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 15:54:40: 44000000 INFO @ Wed, 08 Dec 2021 15:54:43: 36000000 INFO @ Wed, 08 Dec 2021 15:54:49: 45000000 INFO @ Wed, 08 Dec 2021 15:54:52: 37000000 INFO @ Wed, 08 Dec 2021 15:54:58: 46000000 INFO @ Wed, 08 Dec 2021 15:55:01: 38000000 INFO @ Wed, 08 Dec 2021 15:55:01: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:55:02: #1 tag size is determined as 75 bps INFO @ Wed, 08 Dec 2021 15:55:02: #1 tag size = 75 INFO @ Wed, 08 Dec 2021 15:55:02: #1 total tags in treatment: 22975507 INFO @ Wed, 08 Dec 2021 15:55:02: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:55:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:55:02: #1 tags after filtering in treatment: 20612514 INFO @ Wed, 08 Dec 2021 15:55:02: #1 Redundant rate of treatment: 0.10 INFO @ Wed, 08 Dec 2021 15:55:02: #1 finished! INFO @ Wed, 08 Dec 2021 15:55:02: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:55:02: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:55:04: #2 number of paired peaks: 257 WARNING @ Wed, 08 Dec 2021 15:55:04: Fewer paired peaks (257) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 257 pairs to build model! INFO @ Wed, 08 Dec 2021 15:55:04: start model_add_line... INFO @ Wed, 08 Dec 2021 15:55:04: start X-correlation... INFO @ Wed, 08 Dec 2021 15:55:04: end of X-cor INFO @ Wed, 08 Dec 2021 15:55:04: #2 finished! INFO @ Wed, 08 Dec 2021 15:55:04: #2 predicted fragment length is 98 bps INFO @ Wed, 08 Dec 2021 15:55:04: #2 alternative fragment length(s) may be 3,98,121 bps INFO @ Wed, 08 Dec 2021 15:55:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.10_model.r WARNING @ Wed, 08 Dec 2021 15:55:04: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 15:55:04: #2 You may need to consider one of the other alternative d(s): 3,98,121 WARNING @ Wed, 08 Dec 2021 15:55:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 15:55:04: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:55:04: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:55:09: 39000000 INFO @ Wed, 08 Dec 2021 15:55:18: 40000000 INFO @ Wed, 08 Dec 2021 15:55:22: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.05_peaks.xls INFO @ Wed, 08 Dec 2021 15:55:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:55:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.05_summits.bed INFO @ Wed, 08 Dec 2021 15:55:22: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (623 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 15:55:27: 41000000 INFO @ Wed, 08 Dec 2021 15:55:35: 42000000 INFO @ Wed, 08 Dec 2021 15:55:44: 43000000 INFO @ Wed, 08 Dec 2021 15:55:52: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:55:53: 44000000 INFO @ Wed, 08 Dec 2021 15:56:01: 45000000 INFO @ Wed, 08 Dec 2021 15:56:10: 46000000 INFO @ Wed, 08 Dec 2021 15:56:13: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.10_peaks.xls INFO @ Wed, 08 Dec 2021 15:56:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:56:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.10_summits.bed INFO @ Wed, 08 Dec 2021 15:56:13: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (418 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 15:56:14: #1 tag size is determined as 75 bps INFO @ Wed, 08 Dec 2021 15:56:14: #1 tag size = 75 INFO @ Wed, 08 Dec 2021 15:56:14: #1 total tags in treatment: 22975507 INFO @ Wed, 08 Dec 2021 15:56:14: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:56:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:56:15: #1 tags after filtering in treatment: 20612514 INFO @ Wed, 08 Dec 2021 15:56:15: #1 Redundant rate of treatment: 0.10 INFO @ Wed, 08 Dec 2021 15:56:15: #1 finished! INFO @ Wed, 08 Dec 2021 15:56:15: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:56:15: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:56:16: #2 number of paired peaks: 257 WARNING @ Wed, 08 Dec 2021 15:56:16: Fewer paired peaks (257) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 257 pairs to build model! INFO @ Wed, 08 Dec 2021 15:56:16: start model_add_line... INFO @ Wed, 08 Dec 2021 15:56:16: start X-correlation... INFO @ Wed, 08 Dec 2021 15:56:16: end of X-cor INFO @ Wed, 08 Dec 2021 15:56:16: #2 finished! INFO @ Wed, 08 Dec 2021 15:56:16: #2 predicted fragment length is 98 bps INFO @ Wed, 08 Dec 2021 15:56:16: #2 alternative fragment length(s) may be 3,98,121 bps INFO @ Wed, 08 Dec 2021 15:56:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.20_model.r WARNING @ Wed, 08 Dec 2021 15:56:16: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 15:56:16: #2 You may need to consider one of the other alternative d(s): 3,98,121 WARNING @ Wed, 08 Dec 2021 15:56:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 15:56:16: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:56:16: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:57:04: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:57:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.20_peaks.xls INFO @ Wed, 08 Dec 2021 15:57:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:57:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948256/SRX8948256.20_summits.bed INFO @ Wed, 08 Dec 2021 15:57:26: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (258 records, 4 fields): 18 millis CompletedMACS2peakCalling