Job ID = 14158160 SRX = SRX8948255 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:40:13 43080794 reads; of these: 43080794 (100.00%) were paired; of these: 14298689 (33.19%) aligned concordantly 0 times 24812783 (57.60%) aligned concordantly exactly 1 time 3969322 (9.21%) aligned concordantly >1 times ---- 14298689 pairs aligned concordantly 0 times; of these: 66739 (0.47%) aligned discordantly 1 time ---- 14231950 pairs aligned 0 times concordantly or discordantly; of these: 28463900 mates make up the pairs; of these: 28283152 (99.36%) aligned 0 times 124855 (0.44%) aligned exactly 1 time 55893 (0.20%) aligned >1 times 67.17% overall alignment rate Time searching: 01:40:14 Overall time: 01:40:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 779554 / 28276270 = 0.0276 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 16:56:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 16:56:39: #1 read tag files... INFO @ Wed, 08 Dec 2021 16:56:39: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 16:56:59: 1000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 16:57:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 16:57:08: #1 read tag files... INFO @ Wed, 08 Dec 2021 16:57:08: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 16:57:14: 2000000 INFO @ Wed, 08 Dec 2021 16:57:21: 1000000 INFO @ Wed, 08 Dec 2021 16:57:31: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 16:57:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 16:57:38: #1 read tag files... INFO @ Wed, 08 Dec 2021 16:57:38: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 16:57:38: 2000000 INFO @ Wed, 08 Dec 2021 16:57:46: 4000000 INFO @ Wed, 08 Dec 2021 16:57:54: 3000000 INFO @ Wed, 08 Dec 2021 16:57:55: 1000000 INFO @ Wed, 08 Dec 2021 16:58:05: 5000000 INFO @ Wed, 08 Dec 2021 16:58:13: 4000000 INFO @ Wed, 08 Dec 2021 16:58:13: 2000000 INFO @ Wed, 08 Dec 2021 16:58:23: 6000000 INFO @ Wed, 08 Dec 2021 16:58:28: 3000000 INFO @ Wed, 08 Dec 2021 16:58:34: 5000000 INFO @ Wed, 08 Dec 2021 16:58:40: 7000000 INFO @ Wed, 08 Dec 2021 16:58:41: 4000000 INFO @ Wed, 08 Dec 2021 16:58:56: 8000000 INFO @ Wed, 08 Dec 2021 16:58:56: 5000000 INFO @ Wed, 08 Dec 2021 16:58:58: 6000000 INFO @ Wed, 08 Dec 2021 16:59:08: 6000000 INFO @ Wed, 08 Dec 2021 16:59:11: 9000000 INFO @ Wed, 08 Dec 2021 16:59:21: 7000000 INFO @ Wed, 08 Dec 2021 16:59:22: 7000000 INFO @ Wed, 08 Dec 2021 16:59:28: 10000000 INFO @ Wed, 08 Dec 2021 16:59:36: 8000000 INFO @ Wed, 08 Dec 2021 16:59:37: 8000000 INFO @ Wed, 08 Dec 2021 16:59:46: 11000000 INFO @ Wed, 08 Dec 2021 16:59:49: 9000000 INFO @ Wed, 08 Dec 2021 16:59:52: 9000000 INFO @ Wed, 08 Dec 2021 17:00:04: 10000000 INFO @ Wed, 08 Dec 2021 17:00:05: 12000000 INFO @ Wed, 08 Dec 2021 17:00:10: 10000000 INFO @ Wed, 08 Dec 2021 17:00:20: 13000000 INFO @ Wed, 08 Dec 2021 17:00:21: 11000000 INFO @ Wed, 08 Dec 2021 17:00:26: 11000000 INFO @ Wed, 08 Dec 2021 17:00:36: 14000000 INFO @ Wed, 08 Dec 2021 17:00:38: 12000000 INFO @ Wed, 08 Dec 2021 17:00:40: 12000000 INFO @ Wed, 08 Dec 2021 17:00:52: 15000000 INFO @ Wed, 08 Dec 2021 17:00:53: 13000000 INFO @ Wed, 08 Dec 2021 17:00:54: 13000000 INFO @ Wed, 08 Dec 2021 17:01:05: 14000000 INFO @ Wed, 08 Dec 2021 17:01:08: 16000000 INFO @ Wed, 08 Dec 2021 17:01:09: 14000000 INFO @ Wed, 08 Dec 2021 17:01:19: 15000000 INFO @ Wed, 08 Dec 2021 17:01:22: 15000000 INFO @ Wed, 08 Dec 2021 17:01:25: 17000000 INFO @ Wed, 08 Dec 2021 17:01:32: 16000000 INFO @ Wed, 08 Dec 2021 17:01:34: 16000000 INFO @ Wed, 08 Dec 2021 17:01:44: 17000000 INFO @ Wed, 08 Dec 2021 17:01:48: 18000000 INFO @ Wed, 08 Dec 2021 17:01:49: 17000000 INFO @ Wed, 08 Dec 2021 17:01:59: 18000000 INFO @ Wed, 08 Dec 2021 17:02:06: 18000000 INFO @ Wed, 08 Dec 2021 17:02:10: 19000000 INFO @ Wed, 08 Dec 2021 17:02:12: 19000000 INFO @ Wed, 08 Dec 2021 17:02:18: 19000000 INFO @ Wed, 08 Dec 2021 17:02:31: 20000000 INFO @ Wed, 08 Dec 2021 17:02:33: 20000000 INFO @ Wed, 08 Dec 2021 17:02:35: 20000000 INFO @ Wed, 08 Dec 2021 17:02:48: 21000000 INFO @ Wed, 08 Dec 2021 17:02:50: 21000000 INFO @ Wed, 08 Dec 2021 17:02:53: 21000000 INFO @ Wed, 08 Dec 2021 17:03:04: 22000000 INFO @ Wed, 08 Dec 2021 17:03:04: 22000000 INFO @ Wed, 08 Dec 2021 17:03:09: 22000000 INFO @ Wed, 08 Dec 2021 17:03:18: 23000000 INFO @ Wed, 08 Dec 2021 17:03:19: 23000000 INFO @ Wed, 08 Dec 2021 17:03:27: 23000000 INFO @ Wed, 08 Dec 2021 17:03:33: 24000000 INFO @ Wed, 08 Dec 2021 17:03:36: 24000000 INFO @ Wed, 08 Dec 2021 17:03:46: 24000000 INFO @ Wed, 08 Dec 2021 17:03:50: 25000000 INFO @ Wed, 08 Dec 2021 17:03:54: 25000000 INFO @ Wed, 08 Dec 2021 17:04:04: 26000000 INFO @ Wed, 08 Dec 2021 17:04:05: 25000000 INFO @ Wed, 08 Dec 2021 17:04:15: 26000000 INFO @ Wed, 08 Dec 2021 17:04:21: 27000000 INFO @ Wed, 08 Dec 2021 17:04:23: 26000000 INFO @ Wed, 08 Dec 2021 17:04:35: 28000000 INFO @ Wed, 08 Dec 2021 17:04:37: 27000000 INFO @ Wed, 08 Dec 2021 17:04:42: 27000000 INFO @ Wed, 08 Dec 2021 17:04:45: 29000000 INFO @ Wed, 08 Dec 2021 17:04:59: 30000000 INFO @ Wed, 08 Dec 2021 17:04:59: 28000000 INFO @ Wed, 08 Dec 2021 17:05:00: 28000000 INFO @ Wed, 08 Dec 2021 17:05:11: 31000000 INFO @ Wed, 08 Dec 2021 17:05:19: 29000000 INFO @ Wed, 08 Dec 2021 17:05:25: 29000000 INFO @ Wed, 08 Dec 2021 17:05:28: 32000000 INFO @ Wed, 08 Dec 2021 17:05:37: 30000000 INFO @ Wed, 08 Dec 2021 17:05:45: 33000000 INFO @ Wed, 08 Dec 2021 17:05:48: 30000000 INFO @ Wed, 08 Dec 2021 17:05:57: 31000000 INFO @ Wed, 08 Dec 2021 17:06:05: 34000000 INFO @ Wed, 08 Dec 2021 17:06:12: 31000000 INFO @ Wed, 08 Dec 2021 17:06:14: 32000000 INFO @ Wed, 08 Dec 2021 17:06:26: 35000000 INFO @ Wed, 08 Dec 2021 17:06:31: 33000000 INFO @ Wed, 08 Dec 2021 17:06:36: 32000000 INFO @ Wed, 08 Dec 2021 17:06:44: 36000000 INFO @ Wed, 08 Dec 2021 17:06:49: 34000000 INFO @ Wed, 08 Dec 2021 17:06:59: 37000000 INFO @ Wed, 08 Dec 2021 17:07:02: 33000000 INFO @ Wed, 08 Dec 2021 17:07:06: 35000000 INFO @ Wed, 08 Dec 2021 17:07:14: 38000000 INFO @ Wed, 08 Dec 2021 17:07:23: 34000000 INFO @ Wed, 08 Dec 2021 17:07:24: 36000000 INFO @ Wed, 08 Dec 2021 17:07:28: 39000000 INFO @ Wed, 08 Dec 2021 17:07:39: 37000000 INFO @ Wed, 08 Dec 2021 17:07:42: 35000000 INFO @ Wed, 08 Dec 2021 17:07:43: 40000000 INFO @ Wed, 08 Dec 2021 17:07:54: 36000000 INFO @ Wed, 08 Dec 2021 17:07:58: 38000000 INFO @ Wed, 08 Dec 2021 17:07:59: 41000000 INFO @ Wed, 08 Dec 2021 17:08:06: 37000000 INFO @ Wed, 08 Dec 2021 17:08:15: 42000000 INFO @ Wed, 08 Dec 2021 17:08:17: 39000000 INFO @ Wed, 08 Dec 2021 17:08:23: 38000000 INFO @ Wed, 08 Dec 2021 17:08:32: 43000000 INFO @ Wed, 08 Dec 2021 17:08:34: 40000000 INFO @ Wed, 08 Dec 2021 17:08:42: 39000000 INFO @ Wed, 08 Dec 2021 17:08:50: 44000000 INFO @ Wed, 08 Dec 2021 17:08:53: 41000000 INFO @ Wed, 08 Dec 2021 17:08:57: 40000000 INFO @ Wed, 08 Dec 2021 17:09:08: 45000000 INFO @ Wed, 08 Dec 2021 17:09:11: 42000000 INFO @ Wed, 08 Dec 2021 17:09:14: 41000000 INFO @ Wed, 08 Dec 2021 17:09:25: 46000000 INFO @ Wed, 08 Dec 2021 17:09:28: 42000000 INFO @ Wed, 08 Dec 2021 17:09:32: 43000000 INFO @ Wed, 08 Dec 2021 17:09:41: 47000000 INFO @ Wed, 08 Dec 2021 17:09:42: 43000000 INFO @ Wed, 08 Dec 2021 17:09:48: 44000000 INFO @ Wed, 08 Dec 2021 17:09:57: 44000000 INFO @ Wed, 08 Dec 2021 17:09:58: 48000000 INFO @ Wed, 08 Dec 2021 17:10:07: 45000000 INFO @ Wed, 08 Dec 2021 17:10:16: 49000000 INFO @ Wed, 08 Dec 2021 17:10:18: 45000000 INFO @ Wed, 08 Dec 2021 17:10:29: 46000000 INFO @ Wed, 08 Dec 2021 17:10:31: 50000000 INFO @ Wed, 08 Dec 2021 17:10:36: 46000000 INFO @ Wed, 08 Dec 2021 17:10:46: 47000000 INFO @ Wed, 08 Dec 2021 17:10:46: 51000000 INFO @ Wed, 08 Dec 2021 17:10:52: 47000000 INFO @ Wed, 08 Dec 2021 17:11:04: 52000000 INFO @ Wed, 08 Dec 2021 17:11:05: 48000000 INFO @ Wed, 08 Dec 2021 17:11:10: 48000000 INFO @ Wed, 08 Dec 2021 17:11:17: 53000000 INFO @ Wed, 08 Dec 2021 17:11:24: 49000000 INFO @ Wed, 08 Dec 2021 17:11:25: 49000000 INFO @ Wed, 08 Dec 2021 17:11:33: 54000000 INFO @ Wed, 08 Dec 2021 17:11:39: 50000000 INFO @ Wed, 08 Dec 2021 17:11:40: 50000000 INFO @ Wed, 08 Dec 2021 17:11:53: 55000000 INFO @ Wed, 08 Dec 2021 17:11:54: 51000000 INFO @ Wed, 08 Dec 2021 17:11:57: 51000000 INFO @ Wed, 08 Dec 2021 17:12:07: 56000000 INFO @ Wed, 08 Dec 2021 17:12:12: 52000000 INFO @ Wed, 08 Dec 2021 17:12:13: #1 tag size is determined as 74 bps INFO @ Wed, 08 Dec 2021 17:12:13: #1 tag size = 74 INFO @ Wed, 08 Dec 2021 17:12:13: #1 total tags in treatment: 28003122 INFO @ Wed, 08 Dec 2021 17:12:13: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 17:12:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 17:12:14: #1 tags after filtering in treatment: 24573275 INFO @ Wed, 08 Dec 2021 17:12:14: #1 Redundant rate of treatment: 0.12 INFO @ Wed, 08 Dec 2021 17:12:14: #1 finished! INFO @ Wed, 08 Dec 2021 17:12:14: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 17:12:14: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 17:12:16: 52000000 INFO @ Wed, 08 Dec 2021 17:12:18: #2 number of paired peaks: 113 WARNING @ Wed, 08 Dec 2021 17:12:18: Fewer paired peaks (113) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 113 pairs to build model! INFO @ Wed, 08 Dec 2021 17:12:18: start model_add_line... INFO @ Wed, 08 Dec 2021 17:12:19: start X-correlation... BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 17:12:19: end of X-cor INFO @ Wed, 08 Dec 2021 17:12:19: #2 finished! INFO @ Wed, 08 Dec 2021 17:12:19: #2 predicted fragment length is 98 bps INFO @ Wed, 08 Dec 2021 17:12:19: #2 alternative fragment length(s) may be 2,76,98,112,158,206 bps INFO @ Wed, 08 Dec 2021 17:12:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.20_model.r WARNING @ Wed, 08 Dec 2021 17:12:19: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 17:12:19: #2 You may need to consider one of the other alternative d(s): 2,76,98,112,158,206 WARNING @ Wed, 08 Dec 2021 17:12:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 17:12:19: #3 Call peaks... INFO @ Wed, 08 Dec 2021 17:12:19: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 17:12:27: 53000000 INFO @ Wed, 08 Dec 2021 17:12:36: 53000000 INFO @ Wed, 08 Dec 2021 17:12:43: 54000000 INFO @ Wed, 08 Dec 2021 17:12:57: 54000000 INFO @ Wed, 08 Dec 2021 17:13:02: 55000000 INFO @ Wed, 08 Dec 2021 17:13:14: 55000000 INFO @ Wed, 08 Dec 2021 17:13:20: 56000000 INFO @ Wed, 08 Dec 2021 17:13:26: #1 tag size is determined as 74 bps INFO @ Wed, 08 Dec 2021 17:13:26: #1 tag size = 74 INFO @ Wed, 08 Dec 2021 17:13:26: #1 total tags in treatment: 28003122 INFO @ Wed, 08 Dec 2021 17:13:26: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 17:13:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 17:13:27: #1 tags after filtering in treatment: 24573275 INFO @ Wed, 08 Dec 2021 17:13:27: #1 Redundant rate of treatment: 0.12 INFO @ Wed, 08 Dec 2021 17:13:27: #1 finished! INFO @ Wed, 08 Dec 2021 17:13:27: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 17:13:27: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 17:13:28: 56000000 INFO @ Wed, 08 Dec 2021 17:13:30: #2 number of paired peaks: 113 WARNING @ Wed, 08 Dec 2021 17:13:30: Fewer paired peaks (113) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 113 pairs to build model! INFO @ Wed, 08 Dec 2021 17:13:30: start model_add_line... INFO @ Wed, 08 Dec 2021 17:13:31: start X-correlation... INFO @ Wed, 08 Dec 2021 17:13:31: end of X-cor INFO @ Wed, 08 Dec 2021 17:13:31: #2 finished! INFO @ Wed, 08 Dec 2021 17:13:31: #2 predicted fragment length is 98 bps INFO @ Wed, 08 Dec 2021 17:13:31: #2 alternative fragment length(s) may be 2,76,98,112,158,206 bps INFO @ Wed, 08 Dec 2021 17:13:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.10_model.r WARNING @ Wed, 08 Dec 2021 17:13:31: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 17:13:31: #2 You may need to consider one of the other alternative d(s): 2,76,98,112,158,206 WARNING @ Wed, 08 Dec 2021 17:13:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 17:13:31: #3 Call peaks... INFO @ Wed, 08 Dec 2021 17:13:31: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 17:13:32: #1 tag size is determined as 74 bps INFO @ Wed, 08 Dec 2021 17:13:32: #1 tag size = 74 INFO @ Wed, 08 Dec 2021 17:13:32: #1 total tags in treatment: 28003122 INFO @ Wed, 08 Dec 2021 17:13:32: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 17:13:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 17:13:33: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 17:13:33: #1 tags after filtering in treatment: 24573275 INFO @ Wed, 08 Dec 2021 17:13:33: #1 Redundant rate of treatment: 0.12 INFO @ Wed, 08 Dec 2021 17:13:33: #1 finished! INFO @ Wed, 08 Dec 2021 17:13:33: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 17:13:33: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 17:13:36: #2 number of paired peaks: 113 WARNING @ Wed, 08 Dec 2021 17:13:36: Fewer paired peaks (113) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 113 pairs to build model! INFO @ Wed, 08 Dec 2021 17:13:36: start model_add_line... INFO @ Wed, 08 Dec 2021 17:13:37: start X-correlation... INFO @ Wed, 08 Dec 2021 17:13:37: end of X-cor INFO @ Wed, 08 Dec 2021 17:13:37: #2 finished! INFO @ Wed, 08 Dec 2021 17:13:37: #2 predicted fragment length is 98 bps INFO @ Wed, 08 Dec 2021 17:13:37: #2 alternative fragment length(s) may be 2,76,98,112,158,206 bps INFO @ Wed, 08 Dec 2021 17:13:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.05_model.r WARNING @ Wed, 08 Dec 2021 17:13:37: #2 Since the d (98) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 17:13:37: #2 You may need to consider one of the other alternative d(s): 2,76,98,112,158,206 WARNING @ Wed, 08 Dec 2021 17:13:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 17:13:37: #3 Call peaks... INFO @ Wed, 08 Dec 2021 17:13:37: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 17:14:09: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.20_peaks.xls INFO @ Wed, 08 Dec 2021 17:14:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 17:14:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.20_summits.bed INFO @ Wed, 08 Dec 2021 17:14:09: Done! pass1 - making usageList (6 chroms): 12 millis pass2 - checking and writing primary data (188 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 17:14:41: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 17:14:46: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 17:15:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.05_peaks.xls INFO @ Wed, 08 Dec 2021 17:15:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 17:15:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.05_summits.bed INFO @ Wed, 08 Dec 2021 17:15:15: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (495 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 17:15:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.10_peaks.xls INFO @ Wed, 08 Dec 2021 17:15:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 17:15:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948255/SRX8948255.10_summits.bed INFO @ Wed, 08 Dec 2021 17:15:24: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (346 records, 4 fields): 2 millis CompletedMACS2peakCalling BigWig に変換しました。