Job ID = 14159362 SRX = SRX8948252 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:36:57 76493931 reads; of these: 76493931 (100.00%) were paired; of these: 15702840 (20.53%) aligned concordantly 0 times 49811760 (65.12%) aligned concordantly exactly 1 time 10979331 (14.35%) aligned concordantly >1 times ---- 15702840 pairs aligned concordantly 0 times; of these: 7582346 (48.29%) aligned discordantly 1 time ---- 8120494 pairs aligned 0 times concordantly or discordantly; of these: 16240988 mates make up the pairs; of these: 13411906 (82.58%) aligned 0 times 1048004 (6.45%) aligned exactly 1 time 1781078 (10.97%) aligned >1 times 91.23% overall alignment rate Time searching: 02:36:57 Overall time: 02:36:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 104 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 23185625 / 68022321 = 0.3409 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 00:30:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 00:30:20: #1 read tag files... INFO @ Thu, 09 Dec 2021 00:30:20: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 00:30:28: 1000000 INFO @ Thu, 09 Dec 2021 00:30:37: 2000000 INFO @ Thu, 09 Dec 2021 00:30:46: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 00:30:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 00:30:50: #1 read tag files... INFO @ Thu, 09 Dec 2021 00:30:50: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 00:30:55: 4000000 INFO @ Thu, 09 Dec 2021 00:30:58: 1000000 INFO @ Thu, 09 Dec 2021 00:31:05: 5000000 INFO @ Thu, 09 Dec 2021 00:31:06: 2000000 INFO @ Thu, 09 Dec 2021 00:31:14: 3000000 INFO @ Thu, 09 Dec 2021 00:31:14: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 00:31:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 00:31:20: #1 read tag files... INFO @ Thu, 09 Dec 2021 00:31:20: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 00:31:22: 4000000 INFO @ Thu, 09 Dec 2021 00:31:24: 7000000 INFO @ Thu, 09 Dec 2021 00:31:29: 1000000 INFO @ Thu, 09 Dec 2021 00:31:29: 5000000 INFO @ Thu, 09 Dec 2021 00:31:33: 8000000 INFO @ Thu, 09 Dec 2021 00:31:37: 6000000 INFO @ Thu, 09 Dec 2021 00:31:39: 2000000 INFO @ Thu, 09 Dec 2021 00:31:42: 9000000 INFO @ Thu, 09 Dec 2021 00:31:45: 7000000 INFO @ Thu, 09 Dec 2021 00:31:48: 3000000 INFO @ Thu, 09 Dec 2021 00:31:51: 10000000 INFO @ Thu, 09 Dec 2021 00:31:53: 8000000 INFO @ Thu, 09 Dec 2021 00:31:58: 4000000 INFO @ Thu, 09 Dec 2021 00:32:00: 11000000 INFO @ Thu, 09 Dec 2021 00:32:01: 9000000 INFO @ Thu, 09 Dec 2021 00:32:07: 5000000 INFO @ Thu, 09 Dec 2021 00:32:09: 10000000 INFO @ Thu, 09 Dec 2021 00:32:09: 12000000 INFO @ Thu, 09 Dec 2021 00:32:16: 6000000 INFO @ Thu, 09 Dec 2021 00:32:17: 11000000 INFO @ Thu, 09 Dec 2021 00:32:18: 13000000 INFO @ Thu, 09 Dec 2021 00:32:25: 12000000 INFO @ Thu, 09 Dec 2021 00:32:25: 7000000 INFO @ Thu, 09 Dec 2021 00:32:27: 14000000 INFO @ Thu, 09 Dec 2021 00:32:33: 13000000 INFO @ Thu, 09 Dec 2021 00:32:35: 8000000 INFO @ Thu, 09 Dec 2021 00:32:37: 15000000 INFO @ Thu, 09 Dec 2021 00:32:40: 14000000 INFO @ Thu, 09 Dec 2021 00:32:44: 9000000 INFO @ Thu, 09 Dec 2021 00:32:46: 16000000 INFO @ Thu, 09 Dec 2021 00:32:48: 15000000 INFO @ Thu, 09 Dec 2021 00:32:54: 10000000 INFO @ Thu, 09 Dec 2021 00:32:55: 17000000 INFO @ Thu, 09 Dec 2021 00:32:56: 16000000 INFO @ Thu, 09 Dec 2021 00:33:04: 11000000 INFO @ Thu, 09 Dec 2021 00:33:04: 17000000 INFO @ Thu, 09 Dec 2021 00:33:04: 18000000 INFO @ Thu, 09 Dec 2021 00:33:12: 18000000 INFO @ Thu, 09 Dec 2021 00:33:13: 12000000 INFO @ Thu, 09 Dec 2021 00:33:14: 19000000 INFO @ Thu, 09 Dec 2021 00:33:20: 19000000 INFO @ Thu, 09 Dec 2021 00:33:23: 13000000 INFO @ Thu, 09 Dec 2021 00:33:23: 20000000 INFO @ Thu, 09 Dec 2021 00:33:28: 20000000 INFO @ Thu, 09 Dec 2021 00:33:32: 21000000 INFO @ Thu, 09 Dec 2021 00:33:32: 14000000 INFO @ Thu, 09 Dec 2021 00:33:35: 21000000 INFO @ Thu, 09 Dec 2021 00:33:41: 22000000 INFO @ Thu, 09 Dec 2021 00:33:42: 15000000 INFO @ Thu, 09 Dec 2021 00:33:43: 22000000 INFO @ Thu, 09 Dec 2021 00:33:50: 23000000 INFO @ Thu, 09 Dec 2021 00:33:51: 16000000 INFO @ Thu, 09 Dec 2021 00:33:51: 23000000 INFO @ Thu, 09 Dec 2021 00:33:59: 24000000 INFO @ Thu, 09 Dec 2021 00:34:00: 24000000 INFO @ Thu, 09 Dec 2021 00:34:00: 17000000 INFO @ Thu, 09 Dec 2021 00:34:09: 25000000 INFO @ Thu, 09 Dec 2021 00:34:09: 25000000 INFO @ Thu, 09 Dec 2021 00:34:10: 18000000 INFO @ Thu, 09 Dec 2021 00:34:18: 26000000 INFO @ Thu, 09 Dec 2021 00:34:19: 26000000 INFO @ Thu, 09 Dec 2021 00:34:19: 19000000 INFO @ Thu, 09 Dec 2021 00:34:27: 27000000 INFO @ Thu, 09 Dec 2021 00:34:28: 27000000 INFO @ Thu, 09 Dec 2021 00:34:29: 20000000 INFO @ Thu, 09 Dec 2021 00:34:36: 28000000 INFO @ Thu, 09 Dec 2021 00:34:37: 28000000 INFO @ Thu, 09 Dec 2021 00:34:39: 21000000 INFO @ Thu, 09 Dec 2021 00:34:46: 29000000 INFO @ Thu, 09 Dec 2021 00:34:46: 29000000 INFO @ Thu, 09 Dec 2021 00:34:48: 22000000 INFO @ Thu, 09 Dec 2021 00:34:55: 30000000 INFO @ Thu, 09 Dec 2021 00:34:56: 30000000 INFO @ Thu, 09 Dec 2021 00:34:57: 23000000 INFO @ Thu, 09 Dec 2021 00:35:04: 31000000 INFO @ Thu, 09 Dec 2021 00:35:05: 31000000 INFO @ Thu, 09 Dec 2021 00:35:07: 24000000 INFO @ Thu, 09 Dec 2021 00:35:13: 32000000 INFO @ Thu, 09 Dec 2021 00:35:14: 32000000 INFO @ Thu, 09 Dec 2021 00:35:16: 25000000 INFO @ Thu, 09 Dec 2021 00:35:23: 33000000 INFO @ Thu, 09 Dec 2021 00:35:24: 33000000 INFO @ Thu, 09 Dec 2021 00:35:26: 26000000 INFO @ Thu, 09 Dec 2021 00:35:32: 34000000 INFO @ Thu, 09 Dec 2021 00:35:33: 34000000 INFO @ Thu, 09 Dec 2021 00:35:35: 27000000 INFO @ Thu, 09 Dec 2021 00:35:41: 35000000 INFO @ Thu, 09 Dec 2021 00:35:42: 35000000 INFO @ Thu, 09 Dec 2021 00:35:45: 28000000 INFO @ Thu, 09 Dec 2021 00:35:50: 36000000 INFO @ Thu, 09 Dec 2021 00:35:51: 36000000 INFO @ Thu, 09 Dec 2021 00:35:55: 29000000 INFO @ Thu, 09 Dec 2021 00:35:58: 37000000 INFO @ Thu, 09 Dec 2021 00:35:59: 37000000 INFO @ Thu, 09 Dec 2021 00:36:04: 30000000 INFO @ Thu, 09 Dec 2021 00:36:07: 38000000 INFO @ Thu, 09 Dec 2021 00:36:08: 38000000 INFO @ Thu, 09 Dec 2021 00:36:14: 31000000 INFO @ Thu, 09 Dec 2021 00:36:16: 39000000 INFO @ Thu, 09 Dec 2021 00:36:17: 39000000 INFO @ Thu, 09 Dec 2021 00:36:23: 32000000 INFO @ Thu, 09 Dec 2021 00:36:25: 40000000 INFO @ Thu, 09 Dec 2021 00:36:26: 40000000 INFO @ Thu, 09 Dec 2021 00:36:33: 33000000 INFO @ Thu, 09 Dec 2021 00:36:34: 41000000 INFO @ Thu, 09 Dec 2021 00:36:35: 41000000 INFO @ Thu, 09 Dec 2021 00:36:42: 34000000 INFO @ Thu, 09 Dec 2021 00:36:44: 42000000 INFO @ Thu, 09 Dec 2021 00:36:44: 42000000 INFO @ Thu, 09 Dec 2021 00:36:51: 35000000 INFO @ Thu, 09 Dec 2021 00:36:53: 43000000 INFO @ Thu, 09 Dec 2021 00:36:54: 43000000 INFO @ Thu, 09 Dec 2021 00:37:01: 36000000 INFO @ Thu, 09 Dec 2021 00:37:02: 44000000 INFO @ Thu, 09 Dec 2021 00:37:03: 44000000 INFO @ Thu, 09 Dec 2021 00:37:10: 37000000 INFO @ Thu, 09 Dec 2021 00:37:12: 45000000 INFO @ Thu, 09 Dec 2021 00:37:12: 45000000 INFO @ Thu, 09 Dec 2021 00:37:19: 38000000 INFO @ Thu, 09 Dec 2021 00:37:21: 46000000 INFO @ Thu, 09 Dec 2021 00:37:22: 46000000 INFO @ Thu, 09 Dec 2021 00:37:28: 39000000 INFO @ Thu, 09 Dec 2021 00:37:30: 47000000 INFO @ Thu, 09 Dec 2021 00:37:31: 47000000 INFO @ Thu, 09 Dec 2021 00:37:38: 40000000 INFO @ Thu, 09 Dec 2021 00:37:40: 48000000 INFO @ Thu, 09 Dec 2021 00:37:41: 48000000 INFO @ Thu, 09 Dec 2021 00:37:47: 41000000 INFO @ Thu, 09 Dec 2021 00:37:49: 49000000 INFO @ Thu, 09 Dec 2021 00:37:50: 49000000 INFO @ Thu, 09 Dec 2021 00:37:57: 42000000 INFO @ Thu, 09 Dec 2021 00:37:58: 50000000 INFO @ Thu, 09 Dec 2021 00:37:59: 50000000 INFO @ Thu, 09 Dec 2021 00:38:06: 43000000 INFO @ Thu, 09 Dec 2021 00:38:08: 51000000 INFO @ Thu, 09 Dec 2021 00:38:09: 51000000 INFO @ Thu, 09 Dec 2021 00:38:16: 44000000 INFO @ Thu, 09 Dec 2021 00:38:17: 52000000 INFO @ Thu, 09 Dec 2021 00:38:18: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 09 Dec 2021 00:38:25: 45000000 INFO @ Thu, 09 Dec 2021 00:38:27: 53000000 INFO @ Thu, 09 Dec 2021 00:38:28: 53000000 INFO @ Thu, 09 Dec 2021 00:38:35: 46000000 INFO @ Thu, 09 Dec 2021 00:38:36: 54000000 INFO @ Thu, 09 Dec 2021 00:38:37: 54000000 INFO @ Thu, 09 Dec 2021 00:38:45: 47000000 INFO @ Thu, 09 Dec 2021 00:38:46: 55000000 INFO @ Thu, 09 Dec 2021 00:38:47: 55000000 INFO @ Thu, 09 Dec 2021 00:38:55: 48000000 INFO @ Thu, 09 Dec 2021 00:38:56: 56000000 INFO @ Thu, 09 Dec 2021 00:38:56: 56000000 INFO @ Thu, 09 Dec 2021 00:39:04: 49000000 INFO @ Thu, 09 Dec 2021 00:39:05: 57000000 INFO @ Thu, 09 Dec 2021 00:39:06: 57000000 INFO @ Thu, 09 Dec 2021 00:39:14: 50000000 INFO @ Thu, 09 Dec 2021 00:39:14: 58000000 INFO @ Thu, 09 Dec 2021 00:39:15: 58000000 INFO @ Thu, 09 Dec 2021 00:39:23: 51000000 INFO @ Thu, 09 Dec 2021 00:39:24: 59000000 INFO @ Thu, 09 Dec 2021 00:39:24: 59000000 INFO @ Thu, 09 Dec 2021 00:39:33: 52000000 INFO @ Thu, 09 Dec 2021 00:39:33: 60000000 INFO @ Thu, 09 Dec 2021 00:39:34: 60000000 INFO @ Thu, 09 Dec 2021 00:39:43: 61000000 INFO @ Thu, 09 Dec 2021 00:39:43: 53000000 INFO @ Thu, 09 Dec 2021 00:39:43: 61000000 BigWig に変換しました。 INFO @ Thu, 09 Dec 2021 00:39:52: 62000000 INFO @ Thu, 09 Dec 2021 00:39:52: 54000000 INFO @ Thu, 09 Dec 2021 00:39:53: 62000000 INFO @ Thu, 09 Dec 2021 00:40:02: 63000000 INFO @ Thu, 09 Dec 2021 00:40:02: 55000000 INFO @ Thu, 09 Dec 2021 00:40:02: 63000000 INFO @ Thu, 09 Dec 2021 00:40:11: 64000000 INFO @ Thu, 09 Dec 2021 00:40:12: 64000000 INFO @ Thu, 09 Dec 2021 00:40:12: 56000000 INFO @ Thu, 09 Dec 2021 00:40:20: 65000000 INFO @ Thu, 09 Dec 2021 00:40:21: 65000000 INFO @ Thu, 09 Dec 2021 00:40:21: 57000000 INFO @ Thu, 09 Dec 2021 00:40:30: 66000000 INFO @ Thu, 09 Dec 2021 00:40:31: 66000000 INFO @ Thu, 09 Dec 2021 00:40:31: 58000000 INFO @ Thu, 09 Dec 2021 00:40:39: 67000000 INFO @ Thu, 09 Dec 2021 00:40:40: 67000000 INFO @ Thu, 09 Dec 2021 00:40:41: 59000000 INFO @ Thu, 09 Dec 2021 00:40:48: 68000000 INFO @ Thu, 09 Dec 2021 00:40:49: 68000000 INFO @ Thu, 09 Dec 2021 00:40:51: 60000000 INFO @ Thu, 09 Dec 2021 00:40:58: 69000000 INFO @ Thu, 09 Dec 2021 00:40:59: 69000000 INFO @ Thu, 09 Dec 2021 00:41:00: 61000000 INFO @ Thu, 09 Dec 2021 00:41:07: 70000000 INFO @ Thu, 09 Dec 2021 00:41:08: 70000000 INFO @ Thu, 09 Dec 2021 00:41:09: 62000000 INFO @ Thu, 09 Dec 2021 00:41:16: 71000000 INFO @ Thu, 09 Dec 2021 00:41:17: 71000000 INFO @ Thu, 09 Dec 2021 00:41:19: 63000000 INFO @ Thu, 09 Dec 2021 00:41:25: 72000000 INFO @ Thu, 09 Dec 2021 00:41:26: 72000000 INFO @ Thu, 09 Dec 2021 00:41:29: 64000000 INFO @ Thu, 09 Dec 2021 00:41:35: 73000000 INFO @ Thu, 09 Dec 2021 00:41:36: 73000000 INFO @ Thu, 09 Dec 2021 00:41:38: 65000000 INFO @ Thu, 09 Dec 2021 00:41:44: 74000000 INFO @ Thu, 09 Dec 2021 00:41:45: 74000000 INFO @ Thu, 09 Dec 2021 00:41:48: 66000000 INFO @ Thu, 09 Dec 2021 00:41:54: 75000000 INFO @ Thu, 09 Dec 2021 00:41:55: 75000000 INFO @ Thu, 09 Dec 2021 00:41:58: 67000000 INFO @ Thu, 09 Dec 2021 00:42:03: 76000000 INFO @ Thu, 09 Dec 2021 00:42:04: 76000000 INFO @ Thu, 09 Dec 2021 00:42:07: 68000000 INFO @ Thu, 09 Dec 2021 00:42:13: 77000000 INFO @ Thu, 09 Dec 2021 00:42:14: 77000000 INFO @ Thu, 09 Dec 2021 00:42:17: 69000000 INFO @ Thu, 09 Dec 2021 00:42:22: 78000000 INFO @ Thu, 09 Dec 2021 00:42:23: 78000000 INFO @ Thu, 09 Dec 2021 00:42:26: 70000000 INFO @ Thu, 09 Dec 2021 00:42:32: 79000000 INFO @ Thu, 09 Dec 2021 00:42:33: 79000000 INFO @ Thu, 09 Dec 2021 00:42:36: 71000000 INFO @ Thu, 09 Dec 2021 00:42:42: 80000000 INFO @ Thu, 09 Dec 2021 00:42:43: 80000000 INFO @ Thu, 09 Dec 2021 00:42:45: 72000000 INFO @ Thu, 09 Dec 2021 00:42:51: 81000000 INFO @ Thu, 09 Dec 2021 00:42:52: 81000000 INFO @ Thu, 09 Dec 2021 00:42:55: 73000000 INFO @ Thu, 09 Dec 2021 00:43:01: 82000000 INFO @ Thu, 09 Dec 2021 00:43:02: 82000000 INFO @ Thu, 09 Dec 2021 00:43:05: 74000000 INFO @ Thu, 09 Dec 2021 00:43:10: 83000000 INFO @ Thu, 09 Dec 2021 00:43:11: 83000000 INFO @ Thu, 09 Dec 2021 00:43:14: 75000000 INFO @ Thu, 09 Dec 2021 00:43:20: 84000000 INFO @ Thu, 09 Dec 2021 00:43:20: 84000000 INFO @ Thu, 09 Dec 2021 00:43:24: 76000000 INFO @ Thu, 09 Dec 2021 00:43:29: 85000000 INFO @ Thu, 09 Dec 2021 00:43:30: 85000000 INFO @ Thu, 09 Dec 2021 00:43:34: 77000000 INFO @ Thu, 09 Dec 2021 00:43:38: 86000000 INFO @ Thu, 09 Dec 2021 00:43:39: 86000000 INFO @ Thu, 09 Dec 2021 00:43:43: 78000000 INFO @ Thu, 09 Dec 2021 00:43:48: 87000000 INFO @ Thu, 09 Dec 2021 00:43:49: 87000000 INFO @ Thu, 09 Dec 2021 00:43:53: 79000000 INFO @ Thu, 09 Dec 2021 00:43:57: 88000000 INFO @ Thu, 09 Dec 2021 00:43:58: 88000000 INFO @ Thu, 09 Dec 2021 00:44:03: 80000000 INFO @ Thu, 09 Dec 2021 00:44:07: 89000000 INFO @ Thu, 09 Dec 2021 00:44:07: 89000000 INFO @ Thu, 09 Dec 2021 00:44:12: 81000000 INFO @ Thu, 09 Dec 2021 00:44:16: 90000000 INFO @ Thu, 09 Dec 2021 00:44:17: 90000000 INFO @ Thu, 09 Dec 2021 00:44:21: 82000000 INFO @ Thu, 09 Dec 2021 00:44:25: 91000000 INFO @ Thu, 09 Dec 2021 00:44:26: 91000000 INFO @ Thu, 09 Dec 2021 00:44:31: 83000000 INFO @ Thu, 09 Dec 2021 00:44:35: 92000000 INFO @ Thu, 09 Dec 2021 00:44:36: 92000000 INFO @ Thu, 09 Dec 2021 00:44:40: 84000000 INFO @ Thu, 09 Dec 2021 00:44:44: 93000000 INFO @ Thu, 09 Dec 2021 00:44:45: 93000000 INFO @ Thu, 09 Dec 2021 00:44:47: #1 tag size is determined as 150 bps INFO @ Thu, 09 Dec 2021 00:44:47: #1 tag size = 150 INFO @ Thu, 09 Dec 2021 00:44:47: #1 total tags in treatment: 39561774 INFO @ Thu, 09 Dec 2021 00:44:47: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 00:44:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 00:44:47: #1 tags after filtering in treatment: 32400521 INFO @ Thu, 09 Dec 2021 00:44:47: #1 Redundant rate of treatment: 0.18 INFO @ Thu, 09 Dec 2021 00:44:47: #1 finished! INFO @ Thu, 09 Dec 2021 00:44:47: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 00:44:47: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 00:44:48: #1 tag size is determined as 150 bps INFO @ Thu, 09 Dec 2021 00:44:48: #1 tag size = 150 INFO @ Thu, 09 Dec 2021 00:44:48: #1 total tags in treatment: 39561774 INFO @ Thu, 09 Dec 2021 00:44:48: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 00:44:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 00:44:48: #1 tags after filtering in treatment: 32400521 INFO @ Thu, 09 Dec 2021 00:44:48: #1 Redundant rate of treatment: 0.18 INFO @ Thu, 09 Dec 2021 00:44:48: #1 finished! INFO @ Thu, 09 Dec 2021 00:44:48: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 00:44:48: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 00:44:49: 85000000 INFO @ Thu, 09 Dec 2021 00:44:49: #2 number of paired peaks: 117 WARNING @ Thu, 09 Dec 2021 00:44:49: Fewer paired peaks (117) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 117 pairs to build model! INFO @ Thu, 09 Dec 2021 00:44:49: start model_add_line... INFO @ Thu, 09 Dec 2021 00:44:49: start X-correlation... INFO @ Thu, 09 Dec 2021 00:44:49: end of X-cor INFO @ Thu, 09 Dec 2021 00:44:49: #2 finished! INFO @ Thu, 09 Dec 2021 00:44:49: #2 predicted fragment length is 147 bps INFO @ Thu, 09 Dec 2021 00:44:49: #2 alternative fragment length(s) may be 2,103,141,147,170 bps INFO @ Thu, 09 Dec 2021 00:44:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.05_model.r WARNING @ Thu, 09 Dec 2021 00:44:49: #2 Since the d (147) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 00:44:49: #2 You may need to consider one of the other alternative d(s): 2,103,141,147,170 WARNING @ Thu, 09 Dec 2021 00:44:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 00:44:49: #3 Call peaks... INFO @ Thu, 09 Dec 2021 00:44:49: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 00:44:50: #2 number of paired peaks: 117 WARNING @ Thu, 09 Dec 2021 00:44:50: Fewer paired peaks (117) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 117 pairs to build model! INFO @ Thu, 09 Dec 2021 00:44:50: start model_add_line... INFO @ Thu, 09 Dec 2021 00:44:50: start X-correlation... INFO @ Thu, 09 Dec 2021 00:44:50: end of X-cor INFO @ Thu, 09 Dec 2021 00:44:50: #2 finished! INFO @ Thu, 09 Dec 2021 00:44:50: #2 predicted fragment length is 147 bps INFO @ Thu, 09 Dec 2021 00:44:50: #2 alternative fragment length(s) may be 2,103,141,147,170 bps INFO @ Thu, 09 Dec 2021 00:44:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.10_model.r WARNING @ Thu, 09 Dec 2021 00:44:50: #2 Since the d (147) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 00:44:50: #2 You may need to consider one of the other alternative d(s): 2,103,141,147,170 WARNING @ Thu, 09 Dec 2021 00:44:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 00:44:50: #3 Call peaks... INFO @ Thu, 09 Dec 2021 00:44:50: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 00:44:57: 86000000 INFO @ Thu, 09 Dec 2021 00:45:06: 87000000 INFO @ Thu, 09 Dec 2021 00:45:15: 88000000 INFO @ Thu, 09 Dec 2021 00:45:24: 89000000 INFO @ Thu, 09 Dec 2021 00:45:32: 90000000 INFO @ Thu, 09 Dec 2021 00:45:39: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 00:45:41: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 00:45:41: 91000000 INFO @ Thu, 09 Dec 2021 00:45:50: 92000000 INFO @ Thu, 09 Dec 2021 00:45:59: 93000000 INFO @ Thu, 09 Dec 2021 00:46:01: #1 tag size is determined as 150 bps INFO @ Thu, 09 Dec 2021 00:46:01: #1 tag size = 150 INFO @ Thu, 09 Dec 2021 00:46:01: #1 total tags in treatment: 39561774 INFO @ Thu, 09 Dec 2021 00:46:01: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 00:46:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 00:46:01: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.05_peaks.xls INFO @ Thu, 09 Dec 2021 00:46:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.05_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 00:46:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.05_summits.bed INFO @ Thu, 09 Dec 2021 00:46:01: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (1193 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 00:46:02: #1 tags after filtering in treatment: 32400521 INFO @ Thu, 09 Dec 2021 00:46:02: #1 Redundant rate of treatment: 0.18 INFO @ Thu, 09 Dec 2021 00:46:02: #1 finished! INFO @ Thu, 09 Dec 2021 00:46:02: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 00:46:02: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 00:46:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.10_peaks.xls INFO @ Thu, 09 Dec 2021 00:46:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.10_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 00:46:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.10_summits.bed INFO @ Thu, 09 Dec 2021 00:46:03: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (635 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 00:46:04: #2 number of paired peaks: 117 WARNING @ Thu, 09 Dec 2021 00:46:04: Fewer paired peaks (117) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 117 pairs to build model! INFO @ Thu, 09 Dec 2021 00:46:04: start model_add_line... INFO @ Thu, 09 Dec 2021 00:46:04: start X-correlation... INFO @ Thu, 09 Dec 2021 00:46:04: end of X-cor INFO @ Thu, 09 Dec 2021 00:46:04: #2 finished! INFO @ Thu, 09 Dec 2021 00:46:04: #2 predicted fragment length is 147 bps INFO @ Thu, 09 Dec 2021 00:46:04: #2 alternative fragment length(s) may be 2,103,141,147,170 bps INFO @ Thu, 09 Dec 2021 00:46:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.20_model.r WARNING @ Thu, 09 Dec 2021 00:46:04: #2 Since the d (147) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 09 Dec 2021 00:46:04: #2 You may need to consider one of the other alternative d(s): 2,103,141,147,170 WARNING @ Thu, 09 Dec 2021 00:46:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 09 Dec 2021 00:46:04: #3 Call peaks... INFO @ Thu, 09 Dec 2021 00:46:04: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 00:46:55: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 00:47:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.20_peaks.xls INFO @ Thu, 09 Dec 2021 00:47:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.20_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 00:47:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8948252/SRX8948252.20_summits.bed INFO @ Thu, 09 Dec 2021 00:47:17: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (335 records, 4 fields): 1 millis CompletedMACS2peakCalling