Job ID = 14160650 SRX = SRX8582577 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:29:18 37713483 reads; of these: 37713483 (100.00%) were paired; of these: 5718800 (15.16%) aligned concordantly 0 times 27530701 (73.00%) aligned concordantly exactly 1 time 4463982 (11.84%) aligned concordantly >1 times ---- 5718800 pairs aligned concordantly 0 times; of these: 2809720 (49.13%) aligned discordantly 1 time ---- 2909080 pairs aligned 0 times concordantly or discordantly; of these: 5818160 mates make up the pairs; of these: 3708527 (63.74%) aligned 0 times 1316025 (22.62%) aligned exactly 1 time 793608 (13.64%) aligned >1 times 95.08% overall alignment rate Time searching: 00:29:18 Overall time: 00:29:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 6199135 / 34786270 = 0.1782 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 04:14:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 04:14:26: #1 read tag files... INFO @ Thu, 09 Dec 2021 04:14:26: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 04:14:30: 1000000 INFO @ Thu, 09 Dec 2021 04:14:35: 2000000 INFO @ Thu, 09 Dec 2021 04:14:40: 3000000 INFO @ Thu, 09 Dec 2021 04:14:45: 4000000 INFO @ Thu, 09 Dec 2021 04:14:50: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 04:14:55: 6000000 INFO @ Thu, 09 Dec 2021 04:14:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 04:14:56: #1 read tag files... INFO @ Thu, 09 Dec 2021 04:14:56: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 04:15:00: 7000000 INFO @ Thu, 09 Dec 2021 04:15:02: 1000000 INFO @ Thu, 09 Dec 2021 04:15:06: 8000000 INFO @ Thu, 09 Dec 2021 04:15:08: 2000000 INFO @ Thu, 09 Dec 2021 04:15:12: 9000000 INFO @ Thu, 09 Dec 2021 04:15:13: 3000000 INFO @ Thu, 09 Dec 2021 04:15:18: 10000000 INFO @ Thu, 09 Dec 2021 04:15:19: 4000000 INFO @ Thu, 09 Dec 2021 04:15:23: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 04:15:25: 5000000 INFO @ Thu, 09 Dec 2021 04:15:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 04:15:26: #1 read tag files... INFO @ Thu, 09 Dec 2021 04:15:26: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 04:15:29: 12000000 INFO @ Thu, 09 Dec 2021 04:15:30: 6000000 INFO @ Thu, 09 Dec 2021 04:15:31: 1000000 INFO @ Thu, 09 Dec 2021 04:15:35: 13000000 INFO @ Thu, 09 Dec 2021 04:15:36: 7000000 INFO @ Thu, 09 Dec 2021 04:15:37: 2000000 INFO @ Thu, 09 Dec 2021 04:15:40: 14000000 INFO @ Thu, 09 Dec 2021 04:15:42: 8000000 INFO @ Thu, 09 Dec 2021 04:15:43: 3000000 INFO @ Thu, 09 Dec 2021 04:15:46: 15000000 INFO @ Thu, 09 Dec 2021 04:15:48: 9000000 INFO @ Thu, 09 Dec 2021 04:15:49: 4000000 INFO @ Thu, 09 Dec 2021 04:15:52: 16000000 INFO @ Thu, 09 Dec 2021 04:15:54: 10000000 INFO @ Thu, 09 Dec 2021 04:15:55: 5000000 INFO @ Thu, 09 Dec 2021 04:15:58: 17000000 INFO @ Thu, 09 Dec 2021 04:16:00: 11000000 INFO @ Thu, 09 Dec 2021 04:16:01: 6000000 INFO @ Thu, 09 Dec 2021 04:16:03: 18000000 INFO @ Thu, 09 Dec 2021 04:16:06: 12000000 INFO @ Thu, 09 Dec 2021 04:16:07: 7000000 INFO @ Thu, 09 Dec 2021 04:16:09: 19000000 INFO @ Thu, 09 Dec 2021 04:16:12: 13000000 INFO @ Thu, 09 Dec 2021 04:16:13: 8000000 INFO @ Thu, 09 Dec 2021 04:16:14: 20000000 INFO @ Thu, 09 Dec 2021 04:16:18: 14000000 INFO @ Thu, 09 Dec 2021 04:16:19: 9000000 INFO @ Thu, 09 Dec 2021 04:16:20: 21000000 INFO @ Thu, 09 Dec 2021 04:16:23: 15000000 INFO @ Thu, 09 Dec 2021 04:16:25: 10000000 INFO @ Thu, 09 Dec 2021 04:16:25: 22000000 INFO @ Thu, 09 Dec 2021 04:16:29: 16000000 INFO @ Thu, 09 Dec 2021 04:16:31: 23000000 INFO @ Thu, 09 Dec 2021 04:16:31: 11000000 INFO @ Thu, 09 Dec 2021 04:16:35: 17000000 INFO @ Thu, 09 Dec 2021 04:16:36: 24000000 INFO @ Thu, 09 Dec 2021 04:16:37: 12000000 INFO @ Thu, 09 Dec 2021 04:16:41: 18000000 INFO @ Thu, 09 Dec 2021 04:16:42: 25000000 INFO @ Thu, 09 Dec 2021 04:16:43: 13000000 INFO @ Thu, 09 Dec 2021 04:16:47: 19000000 INFO @ Thu, 09 Dec 2021 04:16:47: 26000000 INFO @ Thu, 09 Dec 2021 04:16:48: 14000000 INFO @ Thu, 09 Dec 2021 04:16:53: 20000000 INFO @ Thu, 09 Dec 2021 04:16:53: 27000000 INFO @ Thu, 09 Dec 2021 04:16:54: 15000000 INFO @ Thu, 09 Dec 2021 04:16:58: 28000000 INFO @ Thu, 09 Dec 2021 04:16:58: 21000000 INFO @ Thu, 09 Dec 2021 04:17:00: 16000000 INFO @ Thu, 09 Dec 2021 04:17:04: 29000000 INFO @ Thu, 09 Dec 2021 04:17:04: 22000000 INFO @ Thu, 09 Dec 2021 04:17:06: 17000000 INFO @ Thu, 09 Dec 2021 04:17:09: 30000000 INFO @ Thu, 09 Dec 2021 04:17:10: 23000000 INFO @ Thu, 09 Dec 2021 04:17:11: 18000000 INFO @ Thu, 09 Dec 2021 04:17:14: 31000000 INFO @ Thu, 09 Dec 2021 04:17:15: 24000000 INFO @ Thu, 09 Dec 2021 04:17:17: 19000000 INFO @ Thu, 09 Dec 2021 04:17:20: 32000000 INFO @ Thu, 09 Dec 2021 04:17:21: 25000000 INFO @ Thu, 09 Dec 2021 04:17:22: 20000000 INFO @ Thu, 09 Dec 2021 04:17:25: 33000000 INFO @ Thu, 09 Dec 2021 04:17:26: 26000000 INFO @ Thu, 09 Dec 2021 04:17:28: 21000000 INFO @ Thu, 09 Dec 2021 04:17:30: 34000000 INFO @ Thu, 09 Dec 2021 04:17:32: 27000000 INFO @ Thu, 09 Dec 2021 04:17:34: 22000000 INFO @ Thu, 09 Dec 2021 04:17:36: 35000000 INFO @ Thu, 09 Dec 2021 04:17:38: 28000000 INFO @ Thu, 09 Dec 2021 04:17:39: 23000000 INFO @ Thu, 09 Dec 2021 04:17:41: 36000000 INFO @ Thu, 09 Dec 2021 04:17:43: 29000000 INFO @ Thu, 09 Dec 2021 04:17:45: 24000000 INFO @ Thu, 09 Dec 2021 04:17:46: 37000000 INFO @ Thu, 09 Dec 2021 04:17:49: 30000000 INFO @ Thu, 09 Dec 2021 04:17:50: 25000000 INFO @ Thu, 09 Dec 2021 04:17:52: 38000000 INFO @ Thu, 09 Dec 2021 04:17:54: 31000000 INFO @ Thu, 09 Dec 2021 04:17:56: 26000000 INFO @ Thu, 09 Dec 2021 04:17:57: 39000000 INFO @ Thu, 09 Dec 2021 04:18:00: 32000000 INFO @ Thu, 09 Dec 2021 04:18:02: 27000000 INFO @ Thu, 09 Dec 2021 04:18:02: 40000000 INFO @ Thu, 09 Dec 2021 04:18:05: 33000000 INFO @ Thu, 09 Dec 2021 04:18:07: 28000000 INFO @ Thu, 09 Dec 2021 04:18:08: 41000000 INFO @ Thu, 09 Dec 2021 04:18:11: 34000000 INFO @ Thu, 09 Dec 2021 04:18:13: 29000000 INFO @ Thu, 09 Dec 2021 04:18:13: 42000000 INFO @ Thu, 09 Dec 2021 04:18:16: 35000000 INFO @ Thu, 09 Dec 2021 04:18:18: 30000000 INFO @ Thu, 09 Dec 2021 04:18:18: 43000000 INFO @ Thu, 09 Dec 2021 04:18:22: 36000000 INFO @ Thu, 09 Dec 2021 04:18:24: 31000000 INFO @ Thu, 09 Dec 2021 04:18:24: 44000000 INFO @ Thu, 09 Dec 2021 04:18:27: 37000000 INFO @ Thu, 09 Dec 2021 04:18:29: 32000000 INFO @ Thu, 09 Dec 2021 04:18:29: 45000000 INFO @ Thu, 09 Dec 2021 04:18:33: 38000000 INFO @ Thu, 09 Dec 2021 04:18:35: 33000000 INFO @ Thu, 09 Dec 2021 04:18:35: 46000000 INFO @ Thu, 09 Dec 2021 04:18:38: 39000000 INFO @ Thu, 09 Dec 2021 04:18:40: 34000000 INFO @ Thu, 09 Dec 2021 04:18:40: 47000000 INFO @ Thu, 09 Dec 2021 04:18:43: 40000000 INFO @ Thu, 09 Dec 2021 04:18:45: 35000000 INFO @ Thu, 09 Dec 2021 04:18:46: 48000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 09 Dec 2021 04:18:49: 41000000 INFO @ Thu, 09 Dec 2021 04:18:51: 36000000 INFO @ Thu, 09 Dec 2021 04:18:51: 49000000 INFO @ Thu, 09 Dec 2021 04:18:54: 42000000 INFO @ Thu, 09 Dec 2021 04:18:56: 37000000 INFO @ Thu, 09 Dec 2021 04:18:57: 50000000 INFO @ Thu, 09 Dec 2021 04:19:00: 43000000 INFO @ Thu, 09 Dec 2021 04:19:02: 38000000 INFO @ Thu, 09 Dec 2021 04:19:02: 51000000 INFO @ Thu, 09 Dec 2021 04:19:05: 44000000 INFO @ Thu, 09 Dec 2021 04:19:07: 39000000 INFO @ Thu, 09 Dec 2021 04:19:09: 52000000 INFO @ Thu, 09 Dec 2021 04:19:11: 45000000 INFO @ Thu, 09 Dec 2021 04:19:12: 40000000 INFO @ Thu, 09 Dec 2021 04:19:15: 53000000 INFO @ Thu, 09 Dec 2021 04:19:16: 46000000 INFO @ Thu, 09 Dec 2021 04:19:18: 41000000 INFO @ Thu, 09 Dec 2021 04:19:21: 47000000 INFO @ Thu, 09 Dec 2021 04:19:21: 54000000 INFO @ Thu, 09 Dec 2021 04:19:23: 42000000 INFO @ Thu, 09 Dec 2021 04:19:27: 48000000 INFO @ Thu, 09 Dec 2021 04:19:27: 55000000 INFO @ Thu, 09 Dec 2021 04:19:29: 43000000 INFO @ Thu, 09 Dec 2021 04:19:32: 49000000 INFO @ Thu, 09 Dec 2021 04:19:33: 56000000 INFO @ Thu, 09 Dec 2021 04:19:34: 44000000 INFO @ Thu, 09 Dec 2021 04:19:38: 50000000 INFO @ Thu, 09 Dec 2021 04:19:38: 57000000 INFO @ Thu, 09 Dec 2021 04:19:40: 45000000 INFO @ Thu, 09 Dec 2021 04:19:43: 51000000 INFO @ Thu, 09 Dec 2021 04:19:43: 58000000 INFO @ Thu, 09 Dec 2021 04:19:45: 46000000 INFO @ Thu, 09 Dec 2021 04:19:49: 59000000 INFO @ Thu, 09 Dec 2021 04:19:49: 52000000 INFO @ Thu, 09 Dec 2021 04:19:50: #1 tag size is determined as 51 bps INFO @ Thu, 09 Dec 2021 04:19:50: #1 tag size = 51 INFO @ Thu, 09 Dec 2021 04:19:50: #1 total tags in treatment: 26111583 INFO @ Thu, 09 Dec 2021 04:19:50: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 04:19:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 04:19:51: 47000000 INFO @ Thu, 09 Dec 2021 04:19:51: #1 tags after filtering in treatment: 22282431 INFO @ Thu, 09 Dec 2021 04:19:51: #1 Redundant rate of treatment: 0.15 INFO @ Thu, 09 Dec 2021 04:19:51: #1 finished! INFO @ Thu, 09 Dec 2021 04:19:51: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 04:19:51: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 04:19:52: #2 number of paired peaks: 292 WARNING @ Thu, 09 Dec 2021 04:19:52: Fewer paired peaks (292) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 292 pairs to build model! INFO @ Thu, 09 Dec 2021 04:19:52: start model_add_line... INFO @ Thu, 09 Dec 2021 04:19:52: start X-correlation... INFO @ Thu, 09 Dec 2021 04:19:52: end of X-cor INFO @ Thu, 09 Dec 2021 04:19:52: #2 finished! INFO @ Thu, 09 Dec 2021 04:19:52: #2 predicted fragment length is 149 bps INFO @ Thu, 09 Dec 2021 04:19:52: #2 alternative fragment length(s) may be 4,149 bps INFO @ Thu, 09 Dec 2021 04:19:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.05_model.r INFO @ Thu, 09 Dec 2021 04:19:52: #3 Call peaks... INFO @ Thu, 09 Dec 2021 04:19:52: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 04:19:55: 53000000 INFO @ Thu, 09 Dec 2021 04:19:56: 48000000 BigWig に変換しました。 INFO @ Thu, 09 Dec 2021 04:20:01: 49000000 INFO @ Thu, 09 Dec 2021 04:20:02: 54000000 INFO @ Thu, 09 Dec 2021 04:20:07: 50000000 INFO @ Thu, 09 Dec 2021 04:20:07: 55000000 INFO @ Thu, 09 Dec 2021 04:20:12: 51000000 INFO @ Thu, 09 Dec 2021 04:20:13: 56000000 INFO @ Thu, 09 Dec 2021 04:20:18: 57000000 INFO @ Thu, 09 Dec 2021 04:20:18: 52000000 INFO @ Thu, 09 Dec 2021 04:20:23: 58000000 INFO @ Thu, 09 Dec 2021 04:20:25: 53000000 INFO @ Thu, 09 Dec 2021 04:20:28: 59000000 INFO @ Thu, 09 Dec 2021 04:20:30: #1 tag size is determined as 51 bps INFO @ Thu, 09 Dec 2021 04:20:30: #1 tag size = 51 INFO @ Thu, 09 Dec 2021 04:20:30: #1 total tags in treatment: 26111583 INFO @ Thu, 09 Dec 2021 04:20:30: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 04:20:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 04:20:30: #1 tags after filtering in treatment: 22282431 INFO @ Thu, 09 Dec 2021 04:20:30: #1 Redundant rate of treatment: 0.15 INFO @ Thu, 09 Dec 2021 04:20:30: #1 finished! INFO @ Thu, 09 Dec 2021 04:20:30: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 04:20:30: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 04:20:31: 54000000 INFO @ Thu, 09 Dec 2021 04:20:32: #2 number of paired peaks: 292 WARNING @ Thu, 09 Dec 2021 04:20:32: Fewer paired peaks (292) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 292 pairs to build model! INFO @ Thu, 09 Dec 2021 04:20:32: start model_add_line... INFO @ Thu, 09 Dec 2021 04:20:32: start X-correlation... INFO @ Thu, 09 Dec 2021 04:20:32: end of X-cor INFO @ Thu, 09 Dec 2021 04:20:32: #2 finished! INFO @ Thu, 09 Dec 2021 04:20:32: #2 predicted fragment length is 149 bps INFO @ Thu, 09 Dec 2021 04:20:32: #2 alternative fragment length(s) may be 4,149 bps INFO @ Thu, 09 Dec 2021 04:20:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.10_model.r INFO @ Thu, 09 Dec 2021 04:20:32: #3 Call peaks... INFO @ Thu, 09 Dec 2021 04:20:32: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 04:20:34: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 04:20:36: 55000000 INFO @ Thu, 09 Dec 2021 04:20:41: 56000000 INFO @ Thu, 09 Dec 2021 04:20:46: 57000000 INFO @ Thu, 09 Dec 2021 04:20:50: 58000000 INFO @ Thu, 09 Dec 2021 04:20:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.05_peaks.xls INFO @ Thu, 09 Dec 2021 04:20:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.05_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 04:20:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.05_summits.bed INFO @ Thu, 09 Dec 2021 04:20:53: Done! INFO @ Thu, 09 Dec 2021 04:20:55: 59000000 pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (9938 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 04:20:57: #1 tag size is determined as 51 bps INFO @ Thu, 09 Dec 2021 04:20:57: #1 tag size = 51 INFO @ Thu, 09 Dec 2021 04:20:57: #1 total tags in treatment: 26111583 INFO @ Thu, 09 Dec 2021 04:20:57: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 04:20:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 04:20:57: #1 tags after filtering in treatment: 22282431 INFO @ Thu, 09 Dec 2021 04:20:57: #1 Redundant rate of treatment: 0.15 INFO @ Thu, 09 Dec 2021 04:20:57: #1 finished! INFO @ Thu, 09 Dec 2021 04:20:57: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 04:20:57: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 04:20:58: #2 number of paired peaks: 292 WARNING @ Thu, 09 Dec 2021 04:20:58: Fewer paired peaks (292) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 292 pairs to build model! INFO @ Thu, 09 Dec 2021 04:20:58: start model_add_line... INFO @ Thu, 09 Dec 2021 04:20:59: start X-correlation... INFO @ Thu, 09 Dec 2021 04:20:59: end of X-cor INFO @ Thu, 09 Dec 2021 04:20:59: #2 finished! INFO @ Thu, 09 Dec 2021 04:20:59: #2 predicted fragment length is 149 bps INFO @ Thu, 09 Dec 2021 04:20:59: #2 alternative fragment length(s) may be 4,149 bps INFO @ Thu, 09 Dec 2021 04:20:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.20_model.r INFO @ Thu, 09 Dec 2021 04:20:59: #3 Call peaks... INFO @ Thu, 09 Dec 2021 04:20:59: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 09 Dec 2021 04:21:11: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 04:21:31: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.10_peaks.xls INFO @ Thu, 09 Dec 2021 04:21:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.10_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 04:21:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.10_summits.bed INFO @ Thu, 09 Dec 2021 04:21:31: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6798 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 04:21:38: #3 Call peaks for each chromosome... INFO @ Thu, 09 Dec 2021 04:21:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.20_peaks.xls INFO @ Thu, 09 Dec 2021 04:21:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.20_peaks.narrowPeak INFO @ Thu, 09 Dec 2021 04:21:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX8582577/SRX8582577.20_summits.bed INFO @ Thu, 09 Dec 2021 04:21:57: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3505 records, 4 fields): 4 millis CompletedMACS2peakCalling