Job ID = 12265638 SRX = SRX7687146 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:32:06 39746363 reads; of these: 39746363 (100.00%) were paired; of these: 6294393 (15.84%) aligned concordantly 0 times 23542730 (59.23%) aligned concordantly exactly 1 time 9909240 (24.93%) aligned concordantly >1 times ---- 6294393 pairs aligned concordantly 0 times; of these: 4523076 (71.86%) aligned discordantly 1 time ---- 1771317 pairs aligned 0 times concordantly or discordantly; of these: 3542634 mates make up the pairs; of these: 1457989 (41.16%) aligned 0 times 743002 (20.97%) aligned exactly 1 time 1341643 (37.87%) aligned >1 times 98.17% overall alignment rate Time searching: 01:32:07 Overall time: 01:32:07 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 15156586 / 37912514 = 0.3998 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:46:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:46:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:46:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:46:29: 1000000 INFO @ Sat, 03 Apr 2021 09:46:40: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:46:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:46:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:46:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:46:51: 3000000 INFO @ Sat, 03 Apr 2021 09:46:56: 1000000 INFO @ Sat, 03 Apr 2021 09:47:02: 4000000 INFO @ Sat, 03 Apr 2021 09:47:03: 2000000 INFO @ Sat, 03 Apr 2021 09:47:11: 3000000 INFO @ Sat, 03 Apr 2021 09:47:13: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:47:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:47:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:47:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:47:18: 4000000 INFO @ Sat, 03 Apr 2021 09:47:24: 6000000 INFO @ Sat, 03 Apr 2021 09:47:26: 1000000 INFO @ Sat, 03 Apr 2021 09:47:26: 5000000 INFO @ Sat, 03 Apr 2021 09:47:34: 2000000 INFO @ Sat, 03 Apr 2021 09:47:34: 6000000 INFO @ Sat, 03 Apr 2021 09:47:36: 7000000 INFO @ Sat, 03 Apr 2021 09:47:42: 3000000 INFO @ Sat, 03 Apr 2021 09:47:42: 7000000 INFO @ Sat, 03 Apr 2021 09:47:47: 8000000 INFO @ Sat, 03 Apr 2021 09:47:50: 4000000 INFO @ Sat, 03 Apr 2021 09:47:50: 8000000 INFO @ Sat, 03 Apr 2021 09:47:58: 5000000 INFO @ Sat, 03 Apr 2021 09:47:58: 9000000 INFO @ Sat, 03 Apr 2021 09:47:59: 9000000 INFO @ Sat, 03 Apr 2021 09:48:06: 6000000 INFO @ Sat, 03 Apr 2021 09:48:06: 10000000 INFO @ Sat, 03 Apr 2021 09:48:11: 10000000 INFO @ Sat, 03 Apr 2021 09:48:14: 7000000 INFO @ Sat, 03 Apr 2021 09:48:14: 11000000 INFO @ Sat, 03 Apr 2021 09:48:22: 11000000 INFO @ Sat, 03 Apr 2021 09:48:22: 8000000 INFO @ Sat, 03 Apr 2021 09:48:23: 12000000 INFO @ Sat, 03 Apr 2021 09:48:31: 9000000 INFO @ Sat, 03 Apr 2021 09:48:31: 13000000 INFO @ Sat, 03 Apr 2021 09:48:34: 12000000 INFO @ Sat, 03 Apr 2021 09:48:38: 10000000 INFO @ Sat, 03 Apr 2021 09:48:39: 14000000 INFO @ Sat, 03 Apr 2021 09:48:46: 13000000 INFO @ Sat, 03 Apr 2021 09:48:47: 11000000 INFO @ Sat, 03 Apr 2021 09:48:47: 15000000 INFO @ Sat, 03 Apr 2021 09:48:54: 12000000 INFO @ Sat, 03 Apr 2021 09:48:55: 16000000 INFO @ Sat, 03 Apr 2021 09:48:57: 14000000 INFO @ Sat, 03 Apr 2021 09:49:02: 13000000 INFO @ Sat, 03 Apr 2021 09:49:03: 17000000 INFO @ Sat, 03 Apr 2021 09:49:09: 15000000 INFO @ Sat, 03 Apr 2021 09:49:10: 14000000 INFO @ Sat, 03 Apr 2021 09:49:10: 18000000 INFO @ Sat, 03 Apr 2021 09:49:18: 15000000 INFO @ Sat, 03 Apr 2021 09:49:18: 19000000 INFO @ Sat, 03 Apr 2021 09:49:21: 16000000 INFO @ Sat, 03 Apr 2021 09:49:26: 20000000 INFO @ Sat, 03 Apr 2021 09:49:26: 16000000 INFO @ Sat, 03 Apr 2021 09:49:31: 17000000 INFO @ Sat, 03 Apr 2021 09:49:34: 21000000 INFO @ Sat, 03 Apr 2021 09:49:36: 17000000 INFO @ Sat, 03 Apr 2021 09:49:41: 22000000 INFO @ Sat, 03 Apr 2021 09:49:43: 18000000 INFO @ Sat, 03 Apr 2021 09:49:44: 18000000 INFO @ Sat, 03 Apr 2021 09:49:51: 23000000 INFO @ Sat, 03 Apr 2021 09:49:52: 19000000 INFO @ Sat, 03 Apr 2021 09:49:55: 19000000 INFO @ Sat, 03 Apr 2021 09:49:59: 20000000 INFO @ Sat, 03 Apr 2021 09:49:59: 24000000 INFO @ Sat, 03 Apr 2021 09:50:06: 20000000 INFO @ Sat, 03 Apr 2021 09:50:07: 21000000 INFO @ Sat, 03 Apr 2021 09:50:08: 25000000 INFO @ Sat, 03 Apr 2021 09:50:14: 22000000 INFO @ Sat, 03 Apr 2021 09:50:16: 26000000 INFO @ Sat, 03 Apr 2021 09:50:18: 21000000 INFO @ Sat, 03 Apr 2021 09:50:23: 23000000 INFO @ Sat, 03 Apr 2021 09:50:24: 27000000 INFO @ Sat, 03 Apr 2021 09:50:29: 22000000 INFO @ Sat, 03 Apr 2021 09:50:30: 24000000 INFO @ Sat, 03 Apr 2021 09:50:32: 28000000 INFO @ Sat, 03 Apr 2021 09:50:38: 25000000 INFO @ Sat, 03 Apr 2021 09:50:39: 29000000 INFO @ Sat, 03 Apr 2021 09:50:41: 23000000 INFO @ Sat, 03 Apr 2021 09:50:46: 26000000 INFO @ Sat, 03 Apr 2021 09:50:47: 30000000 INFO @ Sat, 03 Apr 2021 09:50:52: 24000000 INFO @ Sat, 03 Apr 2021 09:50:53: 27000000 INFO @ Sat, 03 Apr 2021 09:50:54: 31000000 INFO @ Sat, 03 Apr 2021 09:51:01: 28000000 INFO @ Sat, 03 Apr 2021 09:51:02: 32000000 INFO @ Sat, 03 Apr 2021 09:51:04: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:51:09: 29000000 INFO @ Sat, 03 Apr 2021 09:51:09: 33000000 INFO @ Sat, 03 Apr 2021 09:51:15: 26000000 INFO @ Sat, 03 Apr 2021 09:51:16: 30000000 INFO @ Sat, 03 Apr 2021 09:51:19: 34000000 INFO @ Sat, 03 Apr 2021 09:51:23: 31000000 INFO @ Sat, 03 Apr 2021 09:51:25: 27000000 INFO @ Sat, 03 Apr 2021 09:51:27: 35000000 INFO @ Sat, 03 Apr 2021 09:51:31: 32000000 INFO @ Sat, 03 Apr 2021 09:51:35: 36000000 INFO @ Sat, 03 Apr 2021 09:51:37: 28000000 INFO @ Sat, 03 Apr 2021 09:51:39: 33000000 INFO @ Sat, 03 Apr 2021 09:51:43: 37000000 INFO @ Sat, 03 Apr 2021 09:51:47: 34000000 INFO @ Sat, 03 Apr 2021 09:51:48: 29000000 INFO @ Sat, 03 Apr 2021 09:51:50: 38000000 INFO @ Sat, 03 Apr 2021 09:51:55: 35000000 INFO @ Sat, 03 Apr 2021 09:51:58: 39000000 INFO @ Sat, 03 Apr 2021 09:52:00: 30000000 INFO @ Sat, 03 Apr 2021 09:52:03: 36000000 INFO @ Sat, 03 Apr 2021 09:52:06: 40000000 INFO @ Sat, 03 Apr 2021 09:52:11: 37000000 INFO @ Sat, 03 Apr 2021 09:52:11: 31000000 INFO @ Sat, 03 Apr 2021 09:52:14: 41000000 INFO @ Sat, 03 Apr 2021 09:52:18: 38000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:52:22: 42000000 INFO @ Sat, 03 Apr 2021 09:52:22: 32000000 INFO @ Sat, 03 Apr 2021 09:52:26: 39000000 INFO @ Sat, 03 Apr 2021 09:52:30: 43000000 INFO @ Sat, 03 Apr 2021 09:52:34: 33000000 INFO @ Sat, 03 Apr 2021 09:52:34: 40000000 INFO @ Sat, 03 Apr 2021 09:52:38: 44000000 INFO @ Sat, 03 Apr 2021 09:52:42: 41000000 INFO @ Sat, 03 Apr 2021 09:52:45: 34000000 INFO @ Sat, 03 Apr 2021 09:52:45: 45000000 INFO @ Sat, 03 Apr 2021 09:52:50: 42000000 INFO @ Sat, 03 Apr 2021 09:52:53: 46000000 INFO @ Sat, 03 Apr 2021 09:52:56: 35000000 INFO @ Sat, 03 Apr 2021 09:52:58: 43000000 INFO @ Sat, 03 Apr 2021 09:53:01: 47000000 INFO @ Sat, 03 Apr 2021 09:53:06: 44000000 INFO @ Sat, 03 Apr 2021 09:53:06: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:53:06: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:53:06: #1 total tags in treatment: 19252738 INFO @ Sat, 03 Apr 2021 09:53:06: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:53:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:53:07: #1 tags after filtering in treatment: 13017773 INFO @ Sat, 03 Apr 2021 09:53:07: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 09:53:07: #1 finished! INFO @ Sat, 03 Apr 2021 09:53:07: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:53:07: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:53:08: 36000000 INFO @ Sat, 03 Apr 2021 09:53:08: #2 number of paired peaks: 411 WARNING @ Sat, 03 Apr 2021 09:53:08: Fewer paired peaks (411) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 411 pairs to build model! INFO @ Sat, 03 Apr 2021 09:53:08: start model_add_line... INFO @ Sat, 03 Apr 2021 09:53:08: start X-correlation... INFO @ Sat, 03 Apr 2021 09:53:08: end of X-cor INFO @ Sat, 03 Apr 2021 09:53:08: #2 finished! INFO @ Sat, 03 Apr 2021 09:53:08: #2 predicted fragment length is 109 bps INFO @ Sat, 03 Apr 2021 09:53:08: #2 alternative fragment length(s) may be 3,90,109,120 bps INFO @ Sat, 03 Apr 2021 09:53:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.10_model.r WARNING @ Sat, 03 Apr 2021 09:53:08: #2 Since the d (109) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:53:08: #2 You may need to consider one of the other alternative d(s): 3,90,109,120 WARNING @ Sat, 03 Apr 2021 09:53:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:53:08: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:53:08: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:53:12: 45000000 INFO @ Sat, 03 Apr 2021 09:53:19: 37000000 INFO @ Sat, 03 Apr 2021 09:53:20: 46000000 INFO @ Sat, 03 Apr 2021 09:53:27: 47000000 INFO @ Sat, 03 Apr 2021 09:53:30: 38000000 INFO @ Sat, 03 Apr 2021 09:53:32: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:53:33: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:53:33: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:53:33: #1 total tags in treatment: 19252738 INFO @ Sat, 03 Apr 2021 09:53:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:53:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:53:33: #1 tags after filtering in treatment: 13017773 INFO @ Sat, 03 Apr 2021 09:53:33: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 09:53:33: #1 finished! INFO @ Sat, 03 Apr 2021 09:53:33: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:53:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:53:34: #2 number of paired peaks: 411 WARNING @ Sat, 03 Apr 2021 09:53:34: Fewer paired peaks (411) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 411 pairs to build model! INFO @ Sat, 03 Apr 2021 09:53:34: start model_add_line... INFO @ Sat, 03 Apr 2021 09:53:34: start X-correlation... INFO @ Sat, 03 Apr 2021 09:53:34: end of X-cor INFO @ Sat, 03 Apr 2021 09:53:34: #2 finished! INFO @ Sat, 03 Apr 2021 09:53:34: #2 predicted fragment length is 109 bps INFO @ Sat, 03 Apr 2021 09:53:34: #2 alternative fragment length(s) may be 3,90,109,120 bps INFO @ Sat, 03 Apr 2021 09:53:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.20_model.r WARNING @ Sat, 03 Apr 2021 09:53:34: #2 Since the d (109) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:53:34: #2 You may need to consider one of the other alternative d(s): 3,90,109,120 WARNING @ Sat, 03 Apr 2021 09:53:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:53:34: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:53:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:53:41: 39000000 INFO @ Sat, 03 Apr 2021 09:53:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:53:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:53:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.10_summits.bed INFO @ Sat, 03 Apr 2021 09:53:45: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (491 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:53:53: 40000000 INFO @ Sat, 03 Apr 2021 09:53:58: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:54:04: 41000000 INFO @ Sat, 03 Apr 2021 09:54:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:54:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:54:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.20_summits.bed INFO @ Sat, 03 Apr 2021 09:54:11: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (217 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:54:12: 42000000 INFO @ Sat, 03 Apr 2021 09:54:21: 43000000 INFO @ Sat, 03 Apr 2021 09:54:30: 44000000 INFO @ Sat, 03 Apr 2021 09:54:37: 45000000 INFO @ Sat, 03 Apr 2021 09:54:43: 46000000 INFO @ Sat, 03 Apr 2021 09:54:50: 47000000 INFO @ Sat, 03 Apr 2021 09:54:55: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:54:55: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:54:55: #1 total tags in treatment: 19252738 INFO @ Sat, 03 Apr 2021 09:54:55: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:54:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:54:55: #1 tags after filtering in treatment: 13017773 INFO @ Sat, 03 Apr 2021 09:54:55: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 09:54:55: #1 finished! INFO @ Sat, 03 Apr 2021 09:54:55: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:54:55: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:54:56: #2 number of paired peaks: 411 WARNING @ Sat, 03 Apr 2021 09:54:56: Fewer paired peaks (411) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 411 pairs to build model! INFO @ Sat, 03 Apr 2021 09:54:56: start model_add_line... INFO @ Sat, 03 Apr 2021 09:54:56: start X-correlation... INFO @ Sat, 03 Apr 2021 09:54:56: end of X-cor INFO @ Sat, 03 Apr 2021 09:54:56: #2 finished! INFO @ Sat, 03 Apr 2021 09:54:56: #2 predicted fragment length is 109 bps INFO @ Sat, 03 Apr 2021 09:54:56: #2 alternative fragment length(s) may be 3,90,109,120 bps INFO @ Sat, 03 Apr 2021 09:54:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.05_model.r WARNING @ Sat, 03 Apr 2021 09:54:56: #2 Since the d (109) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:54:56: #2 You may need to consider one of the other alternative d(s): 3,90,109,120 WARNING @ Sat, 03 Apr 2021 09:54:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:54:56: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:54:56: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:55:20: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:55:33: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:55:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:55:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX7687146/SRX7687146.05_summits.bed INFO @ Sat, 03 Apr 2021 09:55:33: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (1074 records, 4 fields): 4 millis CompletedMACS2peakCalling