Job ID = 12267550 SRX = SRX7246274 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:28:10 97814500 reads; of these: 97814500 (100.00%) were paired; of these: 52242862 (53.41%) aligned concordantly 0 times 39801337 (40.69%) aligned concordantly exactly 1 time 5770301 (5.90%) aligned concordantly >1 times ---- 52242862 pairs aligned concordantly 0 times; of these: 12964026 (24.81%) aligned discordantly 1 time ---- 39278836 pairs aligned 0 times concordantly or discordantly; of these: 78557672 mates make up the pairs; of these: 73343012 (93.36%) aligned 0 times 2166927 (2.76%) aligned exactly 1 time 3047733 (3.88%) aligned >1 times 62.51% overall alignment rate Time searching: 02:28:10 Overall time: 02:28:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 92 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 21603040 / 58143857 = 0.3715 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 13:22:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 13:22:11: #1 read tag files... INFO @ Sat, 03 Apr 2021 13:22:11: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 13:22:19: 1000000 INFO @ Sat, 03 Apr 2021 13:22:28: 2000000 INFO @ Sat, 03 Apr 2021 13:22:36: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 13:22:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 13:22:41: #1 read tag files... INFO @ Sat, 03 Apr 2021 13:22:41: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 13:22:45: 4000000 INFO @ Sat, 03 Apr 2021 13:22:50: 1000000 INFO @ Sat, 03 Apr 2021 13:22:53: 5000000 INFO @ Sat, 03 Apr 2021 13:22:58: 2000000 INFO @ Sat, 03 Apr 2021 13:23:02: 6000000 INFO @ Sat, 03 Apr 2021 13:23:07: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 13:23:11: 7000000 INFO @ Sat, 03 Apr 2021 13:23:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 13:23:11: #1 read tag files... INFO @ Sat, 03 Apr 2021 13:23:11: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 13:23:16: 4000000 INFO @ Sat, 03 Apr 2021 13:23:20: 8000000 INFO @ Sat, 03 Apr 2021 13:23:20: 1000000 INFO @ Sat, 03 Apr 2021 13:23:25: 5000000 INFO @ Sat, 03 Apr 2021 13:23:29: 9000000 INFO @ Sat, 03 Apr 2021 13:23:29: 2000000 INFO @ Sat, 03 Apr 2021 13:23:34: 6000000 INFO @ Sat, 03 Apr 2021 13:23:38: 10000000 INFO @ Sat, 03 Apr 2021 13:23:38: 3000000 INFO @ Sat, 03 Apr 2021 13:23:43: 7000000 INFO @ Sat, 03 Apr 2021 13:23:47: 11000000 INFO @ Sat, 03 Apr 2021 13:23:47: 4000000 INFO @ Sat, 03 Apr 2021 13:23:52: 8000000 INFO @ Sat, 03 Apr 2021 13:23:56: 12000000 INFO @ Sat, 03 Apr 2021 13:23:56: 5000000 INFO @ Sat, 03 Apr 2021 13:24:01: 9000000 INFO @ Sat, 03 Apr 2021 13:24:05: 13000000 INFO @ Sat, 03 Apr 2021 13:24:05: 6000000 INFO @ Sat, 03 Apr 2021 13:24:10: 10000000 INFO @ Sat, 03 Apr 2021 13:24:14: 14000000 INFO @ Sat, 03 Apr 2021 13:24:14: 7000000 INFO @ Sat, 03 Apr 2021 13:24:18: 11000000 INFO @ Sat, 03 Apr 2021 13:24:23: 15000000 INFO @ Sat, 03 Apr 2021 13:24:23: 8000000 INFO @ Sat, 03 Apr 2021 13:24:27: 12000000 INFO @ Sat, 03 Apr 2021 13:24:32: 16000000 INFO @ Sat, 03 Apr 2021 13:24:32: 9000000 INFO @ Sat, 03 Apr 2021 13:24:36: 13000000 INFO @ Sat, 03 Apr 2021 13:24:41: 17000000 INFO @ Sat, 03 Apr 2021 13:24:41: 10000000 INFO @ Sat, 03 Apr 2021 13:24:45: 14000000 INFO @ Sat, 03 Apr 2021 13:24:50: 18000000 INFO @ Sat, 03 Apr 2021 13:24:50: 11000000 INFO @ Sat, 03 Apr 2021 13:24:54: 15000000 INFO @ Sat, 03 Apr 2021 13:24:58: 12000000 INFO @ Sat, 03 Apr 2021 13:24:59: 19000000 INFO @ Sat, 03 Apr 2021 13:25:02: 16000000 INFO @ Sat, 03 Apr 2021 13:25:07: 13000000 INFO @ Sat, 03 Apr 2021 13:25:08: 20000000 INFO @ Sat, 03 Apr 2021 13:25:12: 17000000 INFO @ Sat, 03 Apr 2021 13:25:17: 14000000 INFO @ Sat, 03 Apr 2021 13:25:17: 21000000 INFO @ Sat, 03 Apr 2021 13:25:21: 18000000 INFO @ Sat, 03 Apr 2021 13:25:26: 15000000 INFO @ Sat, 03 Apr 2021 13:25:26: 22000000 INFO @ Sat, 03 Apr 2021 13:25:30: 19000000 INFO @ Sat, 03 Apr 2021 13:25:35: 16000000 INFO @ Sat, 03 Apr 2021 13:25:35: 23000000 INFO @ Sat, 03 Apr 2021 13:25:39: 20000000 INFO @ Sat, 03 Apr 2021 13:25:44: 17000000 INFO @ Sat, 03 Apr 2021 13:25:44: 24000000 INFO @ Sat, 03 Apr 2021 13:25:48: 21000000 INFO @ Sat, 03 Apr 2021 13:25:53: 18000000 INFO @ Sat, 03 Apr 2021 13:25:53: 25000000 INFO @ Sat, 03 Apr 2021 13:25:57: 22000000 INFO @ Sat, 03 Apr 2021 13:26:02: 19000000 INFO @ Sat, 03 Apr 2021 13:26:02: 26000000 INFO @ Sat, 03 Apr 2021 13:26:06: 23000000 INFO @ Sat, 03 Apr 2021 13:26:10: 27000000 INFO @ Sat, 03 Apr 2021 13:26:11: 20000000 INFO @ Sat, 03 Apr 2021 13:26:15: 24000000 INFO @ Sat, 03 Apr 2021 13:26:19: 28000000 INFO @ Sat, 03 Apr 2021 13:26:19: 21000000 INFO @ Sat, 03 Apr 2021 13:26:24: 25000000 INFO @ Sat, 03 Apr 2021 13:26:28: 29000000 INFO @ Sat, 03 Apr 2021 13:26:29: 22000000 INFO @ Sat, 03 Apr 2021 13:26:33: 26000000 INFO @ Sat, 03 Apr 2021 13:26:37: 30000000 INFO @ Sat, 03 Apr 2021 13:26:38: 23000000 INFO @ Sat, 03 Apr 2021 13:26:41: 27000000 INFO @ Sat, 03 Apr 2021 13:26:45: 31000000 INFO @ Sat, 03 Apr 2021 13:26:46: 24000000 INFO @ Sat, 03 Apr 2021 13:26:50: 28000000 INFO @ Sat, 03 Apr 2021 13:26:54: 32000000 INFO @ Sat, 03 Apr 2021 13:26:55: 25000000 INFO @ Sat, 03 Apr 2021 13:26:59: 29000000 INFO @ Sat, 03 Apr 2021 13:27:03: 33000000 INFO @ Sat, 03 Apr 2021 13:27:04: 26000000 INFO @ Sat, 03 Apr 2021 13:27:08: 30000000 INFO @ Sat, 03 Apr 2021 13:27:12: 34000000 INFO @ Sat, 03 Apr 2021 13:27:13: 27000000 INFO @ Sat, 03 Apr 2021 13:27:17: 31000000 INFO @ Sat, 03 Apr 2021 13:27:20: 35000000 INFO @ Sat, 03 Apr 2021 13:27:22: 28000000 INFO @ Sat, 03 Apr 2021 13:27:26: 32000000 INFO @ Sat, 03 Apr 2021 13:27:29: 36000000 INFO @ Sat, 03 Apr 2021 13:27:31: 29000000 INFO @ Sat, 03 Apr 2021 13:27:34: 33000000 INFO @ Sat, 03 Apr 2021 13:27:37: 37000000 INFO @ Sat, 03 Apr 2021 13:27:40: 30000000 INFO @ Sat, 03 Apr 2021 13:27:43: 34000000 INFO @ Sat, 03 Apr 2021 13:27:46: 38000000 INFO @ Sat, 03 Apr 2021 13:27:48: 31000000 INFO @ Sat, 03 Apr 2021 13:27:52: 35000000 INFO @ Sat, 03 Apr 2021 13:27:54: 39000000 INFO @ Sat, 03 Apr 2021 13:27:57: 32000000 INFO @ Sat, 03 Apr 2021 13:28:01: 36000000 INFO @ Sat, 03 Apr 2021 13:28:03: 40000000 INFO @ Sat, 03 Apr 2021 13:28:06: 33000000 INFO @ Sat, 03 Apr 2021 13:28:10: 37000000 INFO @ Sat, 03 Apr 2021 13:28:11: 41000000 INFO @ Sat, 03 Apr 2021 13:28:15: 34000000 INFO @ Sat, 03 Apr 2021 13:28:19: 38000000 INFO @ Sat, 03 Apr 2021 13:28:20: 42000000 INFO @ Sat, 03 Apr 2021 13:28:24: 35000000 INFO @ Sat, 03 Apr 2021 13:28:28: 39000000 INFO @ Sat, 03 Apr 2021 13:28:28: 43000000 INFO @ Sat, 03 Apr 2021 13:28:32: 36000000 INFO @ Sat, 03 Apr 2021 13:28:36: 40000000 INFO @ Sat, 03 Apr 2021 13:28:37: 44000000 INFO @ Sat, 03 Apr 2021 13:28:41: 37000000 INFO @ Sat, 03 Apr 2021 13:28:45: 45000000 INFO @ Sat, 03 Apr 2021 13:28:45: 41000000 INFO @ Sat, 03 Apr 2021 13:28:49: 38000000 INFO @ Sat, 03 Apr 2021 13:28:53: 46000000 INFO @ Sat, 03 Apr 2021 13:28:54: 42000000 INFO @ Sat, 03 Apr 2021 13:28:58: 39000000 INFO @ Sat, 03 Apr 2021 13:29:02: 47000000 INFO @ Sat, 03 Apr 2021 13:29:03: 43000000 INFO @ Sat, 03 Apr 2021 13:29:06: 40000000 INFO @ Sat, 03 Apr 2021 13:29:10: 48000000 INFO @ Sat, 03 Apr 2021 13:29:12: 44000000 INFO @ Sat, 03 Apr 2021 13:29:15: 41000000 INFO @ Sat, 03 Apr 2021 13:29:19: 49000000 INFO @ Sat, 03 Apr 2021 13:29:20: 45000000 INFO @ Sat, 03 Apr 2021 13:29:24: 42000000 INFO @ Sat, 03 Apr 2021 13:29:27: 50000000 INFO @ Sat, 03 Apr 2021 13:29:29: 46000000 INFO @ Sat, 03 Apr 2021 13:29:32: 43000000 INFO @ Sat, 03 Apr 2021 13:29:36: 51000000 INFO @ Sat, 03 Apr 2021 13:29:37: 47000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 13:29:41: 44000000 INFO @ Sat, 03 Apr 2021 13:29:44: 52000000 INFO @ Sat, 03 Apr 2021 13:29:46: 48000000 INFO @ Sat, 03 Apr 2021 13:29:49: 45000000 INFO @ Sat, 03 Apr 2021 13:29:53: 53000000 INFO @ Sat, 03 Apr 2021 13:29:54: 49000000 INFO @ Sat, 03 Apr 2021 13:29:57: 46000000 INFO @ Sat, 03 Apr 2021 13:30:01: 54000000 INFO @ Sat, 03 Apr 2021 13:30:03: 50000000 INFO @ Sat, 03 Apr 2021 13:30:06: 47000000 INFO @ Sat, 03 Apr 2021 13:30:10: 55000000 INFO @ Sat, 03 Apr 2021 13:30:11: 51000000 INFO @ Sat, 03 Apr 2021 13:30:14: 48000000 INFO @ Sat, 03 Apr 2021 13:30:18: 56000000 INFO @ Sat, 03 Apr 2021 13:30:20: 52000000 INFO @ Sat, 03 Apr 2021 13:30:23: 49000000 INFO @ Sat, 03 Apr 2021 13:30:27: 57000000 INFO @ Sat, 03 Apr 2021 13:30:28: 53000000 INFO @ Sat, 03 Apr 2021 13:30:31: 50000000 INFO @ Sat, 03 Apr 2021 13:30:35: 58000000 INFO @ Sat, 03 Apr 2021 13:30:37: 54000000 INFO @ Sat, 03 Apr 2021 13:30:40: 51000000 INFO @ Sat, 03 Apr 2021 13:30:44: 59000000 INFO @ Sat, 03 Apr 2021 13:30:45: 55000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 13:30:48: 52000000 INFO @ Sat, 03 Apr 2021 13:30:52: 60000000 INFO @ Sat, 03 Apr 2021 13:30:55: 56000000 INFO @ Sat, 03 Apr 2021 13:30:57: 53000000 INFO @ Sat, 03 Apr 2021 13:31:00: 61000000 INFO @ Sat, 03 Apr 2021 13:31:04: 57000000 INFO @ Sat, 03 Apr 2021 13:31:06: 54000000 INFO @ Sat, 03 Apr 2021 13:31:09: 62000000 INFO @ Sat, 03 Apr 2021 13:31:13: 58000000 INFO @ Sat, 03 Apr 2021 13:31:14: 55000000 INFO @ Sat, 03 Apr 2021 13:31:17: 63000000 INFO @ Sat, 03 Apr 2021 13:31:22: 59000000 INFO @ Sat, 03 Apr 2021 13:31:23: 56000000 INFO @ Sat, 03 Apr 2021 13:31:26: 64000000 INFO @ Sat, 03 Apr 2021 13:31:30: 60000000 INFO @ Sat, 03 Apr 2021 13:31:32: 57000000 INFO @ Sat, 03 Apr 2021 13:31:34: 65000000 INFO @ Sat, 03 Apr 2021 13:31:39: 61000000 INFO @ Sat, 03 Apr 2021 13:31:40: 58000000 INFO @ Sat, 03 Apr 2021 13:31:43: 66000000 INFO @ Sat, 03 Apr 2021 13:31:48: 62000000 INFO @ Sat, 03 Apr 2021 13:31:49: 59000000 INFO @ Sat, 03 Apr 2021 13:31:51: 67000000 INFO @ Sat, 03 Apr 2021 13:31:57: 63000000 INFO @ Sat, 03 Apr 2021 13:31:58: 60000000 INFO @ Sat, 03 Apr 2021 13:32:00: 68000000 INFO @ Sat, 03 Apr 2021 13:32:05: 64000000 INFO @ Sat, 03 Apr 2021 13:32:06: 61000000 INFO @ Sat, 03 Apr 2021 13:32:08: 69000000 INFO @ Sat, 03 Apr 2021 13:32:14: 65000000 INFO @ Sat, 03 Apr 2021 13:32:15: 62000000 INFO @ Sat, 03 Apr 2021 13:32:16: 70000000 INFO @ Sat, 03 Apr 2021 13:32:23: 66000000 INFO @ Sat, 03 Apr 2021 13:32:24: 63000000 INFO @ Sat, 03 Apr 2021 13:32:25: 71000000 INFO @ Sat, 03 Apr 2021 13:32:32: 64000000 INFO @ Sat, 03 Apr 2021 13:32:32: 67000000 INFO @ Sat, 03 Apr 2021 13:32:33: 72000000 INFO @ Sat, 03 Apr 2021 13:32:41: 65000000 INFO @ Sat, 03 Apr 2021 13:32:41: 68000000 INFO @ Sat, 03 Apr 2021 13:32:42: 73000000 INFO @ Sat, 03 Apr 2021 13:32:50: 66000000 INFO @ Sat, 03 Apr 2021 13:32:50: 69000000 INFO @ Sat, 03 Apr 2021 13:32:50: 74000000 INFO @ Sat, 03 Apr 2021 13:32:58: 70000000 INFO @ Sat, 03 Apr 2021 13:32:58: 75000000 INFO @ Sat, 03 Apr 2021 13:32:59: 67000000 INFO @ Sat, 03 Apr 2021 13:33:07: 71000000 INFO @ Sat, 03 Apr 2021 13:33:07: 76000000 INFO @ Sat, 03 Apr 2021 13:33:07: 68000000 INFO @ Sat, 03 Apr 2021 13:33:15: 72000000 INFO @ Sat, 03 Apr 2021 13:33:16: 69000000 INFO @ Sat, 03 Apr 2021 13:33:16: 77000000 INFO @ Sat, 03 Apr 2021 13:33:24: 70000000 INFO @ Sat, 03 Apr 2021 13:33:24: 73000000 INFO @ Sat, 03 Apr 2021 13:33:24: 78000000 INFO @ Sat, 03 Apr 2021 13:33:32: 71000000 INFO @ Sat, 03 Apr 2021 13:33:32: 79000000 INFO @ Sat, 03 Apr 2021 13:33:33: 74000000 INFO @ Sat, 03 Apr 2021 13:33:33: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 13:33:33: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 13:33:33: #1 total tags in treatment: 28277207 INFO @ Sat, 03 Apr 2021 13:33:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 13:33:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 13:33:34: #1 tags after filtering in treatment: 17159709 INFO @ Sat, 03 Apr 2021 13:33:34: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 13:33:34: #1 finished! INFO @ Sat, 03 Apr 2021 13:33:34: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 13:33:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 13:33:35: #2 number of paired peaks: 274 WARNING @ Sat, 03 Apr 2021 13:33:35: Fewer paired peaks (274) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 274 pairs to build model! INFO @ Sat, 03 Apr 2021 13:33:35: start model_add_line... INFO @ Sat, 03 Apr 2021 13:33:35: start X-correlation... INFO @ Sat, 03 Apr 2021 13:33:35: end of X-cor INFO @ Sat, 03 Apr 2021 13:33:35: #2 finished! INFO @ Sat, 03 Apr 2021 13:33:35: #2 predicted fragment length is 167 bps INFO @ Sat, 03 Apr 2021 13:33:35: #2 alternative fragment length(s) may be 167 bps INFO @ Sat, 03 Apr 2021 13:33:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.05_model.r WARNING @ Sat, 03 Apr 2021 13:33:35: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 13:33:35: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Sat, 03 Apr 2021 13:33:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 13:33:35: #3 Call peaks... INFO @ Sat, 03 Apr 2021 13:33:35: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 13:33:41: 72000000 INFO @ Sat, 03 Apr 2021 13:33:41: 75000000 INFO @ Sat, 03 Apr 2021 13:33:49: 73000000 INFO @ Sat, 03 Apr 2021 13:33:50: 76000000 INFO @ Sat, 03 Apr 2021 13:33:58: 74000000 INFO @ Sat, 03 Apr 2021 13:33:58: 77000000 INFO @ Sat, 03 Apr 2021 13:34:06: 75000000 INFO @ Sat, 03 Apr 2021 13:34:07: 78000000 INFO @ Sat, 03 Apr 2021 13:34:10: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 13:34:15: 76000000 INFO @ Sat, 03 Apr 2021 13:34:15: 79000000 INFO @ Sat, 03 Apr 2021 13:34:16: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 13:34:16: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 13:34:16: #1 total tags in treatment: 28277207 INFO @ Sat, 03 Apr 2021 13:34:16: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 13:34:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 13:34:17: #1 tags after filtering in treatment: 17159709 INFO @ Sat, 03 Apr 2021 13:34:17: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 13:34:17: #1 finished! INFO @ Sat, 03 Apr 2021 13:34:17: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 13:34:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 13:34:18: #2 number of paired peaks: 274 WARNING @ Sat, 03 Apr 2021 13:34:18: Fewer paired peaks (274) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 274 pairs to build model! INFO @ Sat, 03 Apr 2021 13:34:18: start model_add_line... INFO @ Sat, 03 Apr 2021 13:34:18: start X-correlation... INFO @ Sat, 03 Apr 2021 13:34:18: end of X-cor INFO @ Sat, 03 Apr 2021 13:34:18: #2 finished! INFO @ Sat, 03 Apr 2021 13:34:18: #2 predicted fragment length is 167 bps INFO @ Sat, 03 Apr 2021 13:34:18: #2 alternative fragment length(s) may be 167 bps INFO @ Sat, 03 Apr 2021 13:34:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.10_model.r WARNING @ Sat, 03 Apr 2021 13:34:18: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 13:34:18: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Sat, 03 Apr 2021 13:34:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 13:34:18: #3 Call peaks... INFO @ Sat, 03 Apr 2021 13:34:18: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 13:34:23: 77000000 INFO @ Sat, 03 Apr 2021 13:34:27: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.05_peaks.xls INFO @ Sat, 03 Apr 2021 13:34:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 13:34:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.05_summits.bed INFO @ Sat, 03 Apr 2021 13:34:27: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6967 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 13:34:31: 78000000 INFO @ Sat, 03 Apr 2021 13:34:39: 79000000 INFO @ Sat, 03 Apr 2021 13:34:40: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 13:34:40: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 13:34:40: #1 total tags in treatment: 28277207 INFO @ Sat, 03 Apr 2021 13:34:40: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 13:34:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 13:34:40: #1 tags after filtering in treatment: 17159709 INFO @ Sat, 03 Apr 2021 13:34:40: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 13:34:40: #1 finished! INFO @ Sat, 03 Apr 2021 13:34:40: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 13:34:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 13:34:42: #2 number of paired peaks: 274 WARNING @ Sat, 03 Apr 2021 13:34:42: Fewer paired peaks (274) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 274 pairs to build model! INFO @ Sat, 03 Apr 2021 13:34:42: start model_add_line... INFO @ Sat, 03 Apr 2021 13:34:42: start X-correlation... INFO @ Sat, 03 Apr 2021 13:34:42: end of X-cor INFO @ Sat, 03 Apr 2021 13:34:42: #2 finished! INFO @ Sat, 03 Apr 2021 13:34:42: #2 predicted fragment length is 167 bps INFO @ Sat, 03 Apr 2021 13:34:42: #2 alternative fragment length(s) may be 167 bps INFO @ Sat, 03 Apr 2021 13:34:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.20_model.r WARNING @ Sat, 03 Apr 2021 13:34:42: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 13:34:42: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Sat, 03 Apr 2021 13:34:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 13:34:42: #3 Call peaks... INFO @ Sat, 03 Apr 2021 13:34:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 13:34:51: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 13:35:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.10_peaks.xls INFO @ Sat, 03 Apr 2021 13:35:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 13:35:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.10_summits.bed INFO @ Sat, 03 Apr 2021 13:35:08: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (4240 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 13:35:17: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 13:35:35: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.20_peaks.xls INFO @ Sat, 03 Apr 2021 13:35:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 13:35:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX7246274/SRX7246274.20_summits.bed INFO @ Sat, 03 Apr 2021 13:35:35: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1910 records, 4 fields): 3 millis CompletedMACS2peakCalling