Job ID = 6368901 SRX = SRX6619603 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:12 prefetch.2.10.7: 1) Downloading 'SRR9866006'... 2020-06-16T00:30:12 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:42:44 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:42:44 prefetch.2.10.7: 1) 'SRR9866006' was downloaded successfully 2020-06-16T00:42:44 prefetch.2.10.7: 'SRR9866006' has 0 unresolved dependencies Read 32927806 spots for SRR9866006/SRR9866006.sra Written 32927806 spots for SRR9866006/SRR9866006.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:30:38 32927806 reads; of these: 32927806 (100.00%) were paired; of these: 17345424 (52.68%) aligned concordantly 0 times 11555093 (35.09%) aligned concordantly exactly 1 time 4027289 (12.23%) aligned concordantly >1 times ---- 17345424 pairs aligned concordantly 0 times; of these: 7735616 (44.60%) aligned discordantly 1 time ---- 9609808 pairs aligned 0 times concordantly or discordantly; of these: 19219616 mates make up the pairs; of these: 15364237 (79.94%) aligned 0 times 1124139 (5.85%) aligned exactly 1 time 2731240 (14.21%) aligned >1 times 76.67% overall alignment rate Time searching: 01:30:39 Overall time: 01:30:39 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4044201 / 22944431 = 0.1763 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:47:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:47:06: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:47:06: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:47:14: 1000000 INFO @ Tue, 16 Jun 2020 11:47:21: 2000000 INFO @ Tue, 16 Jun 2020 11:47:29: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:47:36: 4000000 INFO @ Tue, 16 Jun 2020 11:47:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:47:36: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:47:36: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:47:44: 5000000 INFO @ Tue, 16 Jun 2020 11:47:44: 1000000 INFO @ Tue, 16 Jun 2020 11:47:51: 6000000 INFO @ Tue, 16 Jun 2020 11:47:52: 2000000 INFO @ Tue, 16 Jun 2020 11:47:58: 7000000 INFO @ Tue, 16 Jun 2020 11:48:00: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:48:06: 8000000 INFO @ Tue, 16 Jun 2020 11:48:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:48:06: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:48:06: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:48:08: 4000000 INFO @ Tue, 16 Jun 2020 11:48:13: 9000000 INFO @ Tue, 16 Jun 2020 11:48:16: 1000000 INFO @ Tue, 16 Jun 2020 11:48:18: 5000000 INFO @ Tue, 16 Jun 2020 11:48:21: 10000000 INFO @ Tue, 16 Jun 2020 11:48:25: 2000000 INFO @ Tue, 16 Jun 2020 11:48:27: 6000000 INFO @ Tue, 16 Jun 2020 11:48:28: 11000000 INFO @ Tue, 16 Jun 2020 11:48:35: 3000000 INFO @ Tue, 16 Jun 2020 11:48:36: 12000000 INFO @ Tue, 16 Jun 2020 11:48:36: 7000000 INFO @ Tue, 16 Jun 2020 11:48:43: 13000000 INFO @ Tue, 16 Jun 2020 11:48:44: 4000000 INFO @ Tue, 16 Jun 2020 11:48:45: 8000000 INFO @ Tue, 16 Jun 2020 11:48:51: 14000000 INFO @ Tue, 16 Jun 2020 11:48:53: 5000000 INFO @ Tue, 16 Jun 2020 11:48:54: 9000000 INFO @ Tue, 16 Jun 2020 11:48:58: 15000000 INFO @ Tue, 16 Jun 2020 11:49:03: 6000000 INFO @ Tue, 16 Jun 2020 11:49:04: 10000000 INFO @ Tue, 16 Jun 2020 11:49:05: 16000000 INFO @ Tue, 16 Jun 2020 11:49:12: 7000000 INFO @ Tue, 16 Jun 2020 11:49:13: 17000000 INFO @ Tue, 16 Jun 2020 11:49:13: 11000000 INFO @ Tue, 16 Jun 2020 11:49:20: 18000000 INFO @ Tue, 16 Jun 2020 11:49:21: 8000000 INFO @ Tue, 16 Jun 2020 11:49:23: 12000000 INFO @ Tue, 16 Jun 2020 11:49:28: 19000000 INFO @ Tue, 16 Jun 2020 11:49:30: 9000000 INFO @ Tue, 16 Jun 2020 11:49:32: 13000000 INFO @ Tue, 16 Jun 2020 11:49:35: 20000000 INFO @ Tue, 16 Jun 2020 11:49:39: 10000000 INFO @ Tue, 16 Jun 2020 11:49:41: 14000000 INFO @ Tue, 16 Jun 2020 11:49:42: 21000000 INFO @ Tue, 16 Jun 2020 11:49:49: 11000000 INFO @ Tue, 16 Jun 2020 11:49:50: 22000000 INFO @ Tue, 16 Jun 2020 11:49:50: 15000000 INFO @ Tue, 16 Jun 2020 11:49:57: 23000000 INFO @ Tue, 16 Jun 2020 11:49:58: 12000000 INFO @ Tue, 16 Jun 2020 11:50:00: 16000000 INFO @ Tue, 16 Jun 2020 11:50:05: 24000000 INFO @ Tue, 16 Jun 2020 11:50:08: 13000000 INFO @ Tue, 16 Jun 2020 11:50:09: 17000000 INFO @ Tue, 16 Jun 2020 11:50:12: 25000000 INFO @ Tue, 16 Jun 2020 11:50:17: 14000000 INFO @ Tue, 16 Jun 2020 11:50:18: 18000000 INFO @ Tue, 16 Jun 2020 11:50:19: 26000000 INFO @ Tue, 16 Jun 2020 11:50:26: 15000000 INFO @ Tue, 16 Jun 2020 11:50:27: 27000000 INFO @ Tue, 16 Jun 2020 11:50:28: 19000000 INFO @ Tue, 16 Jun 2020 11:50:34: 28000000 INFO @ Tue, 16 Jun 2020 11:50:35: 16000000 INFO @ Tue, 16 Jun 2020 11:50:37: 20000000 INFO @ Tue, 16 Jun 2020 11:50:42: 29000000 INFO @ Tue, 16 Jun 2020 11:50:45: 17000000 INFO @ Tue, 16 Jun 2020 11:50:46: 21000000 INFO @ Tue, 16 Jun 2020 11:50:49: 30000000 INFO @ Tue, 16 Jun 2020 11:50:54: 18000000 INFO @ Tue, 16 Jun 2020 11:50:56: 22000000 INFO @ Tue, 16 Jun 2020 11:50:57: 31000000 INFO @ Tue, 16 Jun 2020 11:51:03: 19000000 INFO @ Tue, 16 Jun 2020 11:51:04: 32000000 INFO @ Tue, 16 Jun 2020 11:51:05: 23000000 INFO @ Tue, 16 Jun 2020 11:51:11: 33000000 INFO @ Tue, 16 Jun 2020 11:51:13: 20000000 INFO @ Tue, 16 Jun 2020 11:51:14: 24000000 INFO @ Tue, 16 Jun 2020 11:51:19: 34000000 INFO @ Tue, 16 Jun 2020 11:51:22: 21000000 INFO @ Tue, 16 Jun 2020 11:51:24: 25000000 INFO @ Tue, 16 Jun 2020 11:51:26: 35000000 INFO @ Tue, 16 Jun 2020 11:51:31: 22000000 INFO @ Tue, 16 Jun 2020 11:51:33: 26000000 INFO @ Tue, 16 Jun 2020 11:51:34: 36000000 INFO @ Tue, 16 Jun 2020 11:51:41: 23000000 INFO @ Tue, 16 Jun 2020 11:51:41: 37000000 INFO @ Tue, 16 Jun 2020 11:51:42: 27000000 INFO @ Tue, 16 Jun 2020 11:51:49: 38000000 INFO @ Tue, 16 Jun 2020 11:51:50: 24000000 INFO @ Tue, 16 Jun 2020 11:51:52: 28000000 INFO @ Tue, 16 Jun 2020 11:51:56: 39000000 INFO @ Tue, 16 Jun 2020 11:51:59: 25000000 INFO @ Tue, 16 Jun 2020 11:52:01: 29000000 INFO @ Tue, 16 Jun 2020 11:52:04: 40000000 INFO @ Tue, 16 Jun 2020 11:52:09: 26000000 INFO @ Tue, 16 Jun 2020 11:52:10: 30000000 INFO @ Tue, 16 Jun 2020 11:52:11: 41000000 INFO @ Tue, 16 Jun 2020 11:52:18: 27000000 INFO @ Tue, 16 Jun 2020 11:52:19: 42000000 INFO @ Tue, 16 Jun 2020 11:52:20: 31000000 INFO @ Tue, 16 Jun 2020 11:52:22: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:52:22: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:52:22: #1 total tags in treatment: 12568328 INFO @ Tue, 16 Jun 2020 11:52:22: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:52:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:52:22: #1 tags after filtering in treatment: 9802239 INFO @ Tue, 16 Jun 2020 11:52:22: #1 Redundant rate of treatment: 0.22 INFO @ Tue, 16 Jun 2020 11:52:22: #1 finished! INFO @ Tue, 16 Jun 2020 11:52:22: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:52:22: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:52:23: #2 number of paired peaks: 413 WARNING @ Tue, 16 Jun 2020 11:52:23: Fewer paired peaks (413) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 413 pairs to build model! INFO @ Tue, 16 Jun 2020 11:52:23: start model_add_line... INFO @ Tue, 16 Jun 2020 11:52:23: start X-correlation... INFO @ Tue, 16 Jun 2020 11:52:23: end of X-cor INFO @ Tue, 16 Jun 2020 11:52:23: #2 finished! INFO @ Tue, 16 Jun 2020 11:52:23: #2 predicted fragment length is 215 bps INFO @ Tue, 16 Jun 2020 11:52:23: #2 alternative fragment length(s) may be 4,215 bps INFO @ Tue, 16 Jun 2020 11:52:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.05_model.r WARNING @ Tue, 16 Jun 2020 11:52:23: #2 Since the d (215) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:52:23: #2 You may need to consider one of the other alternative d(s): 4,215 WARNING @ Tue, 16 Jun 2020 11:52:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:52:23: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:52:23: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:52:27: 28000000 INFO @ Tue, 16 Jun 2020 11:52:29: 32000000 INFO @ Tue, 16 Jun 2020 11:52:36: 29000000 INFO @ Tue, 16 Jun 2020 11:52:38: 33000000 INFO @ Tue, 16 Jun 2020 11:52:45: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:52:46: 30000000 INFO @ Tue, 16 Jun 2020 11:52:47: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:52:55: 31000000 INFO @ Tue, 16 Jun 2020 11:52:55: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:52:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:52:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.05_summits.bed INFO @ Tue, 16 Jun 2020 11:52:56: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (768 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:52:56: 35000000 INFO @ Tue, 16 Jun 2020 11:53:04: 32000000 INFO @ Tue, 16 Jun 2020 11:53:06: 36000000 INFO @ Tue, 16 Jun 2020 11:53:13: 33000000 INFO @ Tue, 16 Jun 2020 11:53:15: 37000000 INFO @ Tue, 16 Jun 2020 11:53:22: 34000000 INFO @ Tue, 16 Jun 2020 11:53:24: 38000000 INFO @ Tue, 16 Jun 2020 11:53:31: 35000000 INFO @ Tue, 16 Jun 2020 11:53:33: 39000000 INFO @ Tue, 16 Jun 2020 11:53:40: 36000000 INFO @ Tue, 16 Jun 2020 11:53:42: 40000000 INFO @ Tue, 16 Jun 2020 11:53:49: 37000000 INFO @ Tue, 16 Jun 2020 11:53:51: 41000000 INFO @ Tue, 16 Jun 2020 11:53:58: 38000000 INFO @ Tue, 16 Jun 2020 11:54:00: 42000000 INFO @ Tue, 16 Jun 2020 11:54:03: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:54:03: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:54:03: #1 total tags in treatment: 12568328 INFO @ Tue, 16 Jun 2020 11:54:03: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:54:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:54:04: #1 tags after filtering in treatment: 9802239 INFO @ Tue, 16 Jun 2020 11:54:04: #1 Redundant rate of treatment: 0.22 INFO @ Tue, 16 Jun 2020 11:54:04: #1 finished! INFO @ Tue, 16 Jun 2020 11:54:04: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:54:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:54:04: #2 number of paired peaks: 413 WARNING @ Tue, 16 Jun 2020 11:54:04: Fewer paired peaks (413) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 413 pairs to build model! INFO @ Tue, 16 Jun 2020 11:54:04: start model_add_line... INFO @ Tue, 16 Jun 2020 11:54:05: start X-correlation... INFO @ Tue, 16 Jun 2020 11:54:05: end of X-cor INFO @ Tue, 16 Jun 2020 11:54:05: #2 finished! INFO @ Tue, 16 Jun 2020 11:54:05: #2 predicted fragment length is 215 bps INFO @ Tue, 16 Jun 2020 11:54:05: #2 alternative fragment length(s) may be 4,215 bps INFO @ Tue, 16 Jun 2020 11:54:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.10_model.r WARNING @ Tue, 16 Jun 2020 11:54:05: #2 Since the d (215) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:54:05: #2 You may need to consider one of the other alternative d(s): 4,215 WARNING @ Tue, 16 Jun 2020 11:54:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:54:05: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:54:05: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:54:07: 39000000 INFO @ Tue, 16 Jun 2020 11:54:14: 40000000 INFO @ Tue, 16 Jun 2020 11:54:22: 41000000 INFO @ Tue, 16 Jun 2020 11:54:28: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:54:30: 42000000 INFO @ Tue, 16 Jun 2020 11:54:33: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:54:33: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:54:33: #1 total tags in treatment: 12568328 INFO @ Tue, 16 Jun 2020 11:54:33: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:54:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:54:34: #1 tags after filtering in treatment: 9802239 INFO @ Tue, 16 Jun 2020 11:54:34: #1 Redundant rate of treatment: 0.22 INFO @ Tue, 16 Jun 2020 11:54:34: #1 finished! INFO @ Tue, 16 Jun 2020 11:54:34: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:54:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:54:34: #2 number of paired peaks: 413 WARNING @ Tue, 16 Jun 2020 11:54:34: Fewer paired peaks (413) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 413 pairs to build model! INFO @ Tue, 16 Jun 2020 11:54:34: start model_add_line... INFO @ Tue, 16 Jun 2020 11:54:35: start X-correlation... INFO @ Tue, 16 Jun 2020 11:54:35: end of X-cor INFO @ Tue, 16 Jun 2020 11:54:35: #2 finished! INFO @ Tue, 16 Jun 2020 11:54:35: #2 predicted fragment length is 215 bps INFO @ Tue, 16 Jun 2020 11:54:35: #2 alternative fragment length(s) may be 4,215 bps INFO @ Tue, 16 Jun 2020 11:54:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.20_model.r WARNING @ Tue, 16 Jun 2020 11:54:35: #2 Since the d (215) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:54:35: #2 You may need to consider one of the other alternative d(s): 4,215 WARNING @ Tue, 16 Jun 2020 11:54:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:54:35: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:54:35: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:54:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:54:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:54:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.10_summits.bed INFO @ Tue, 16 Jun 2020 11:54:39: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (380 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:54:58: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:55:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:55:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:55:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619603/SRX6619603.20_summits.bed INFO @ Tue, 16 Jun 2020 11:55:08: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (217 records, 4 fields): 1 millis CompletedMACS2peakCalling