Job ID = 6368897 SRX = SRX6619599 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:31 prefetch.2.10.7: 1) Downloading 'SRR9866010'... 2020-06-16T00:30:31 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:42:16 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:42:16 prefetch.2.10.7: 1) 'SRR9866010' was downloaded successfully 2020-06-16T00:42:16 prefetch.2.10.7: 'SRR9866010' has 0 unresolved dependencies Read 31566895 spots for SRR9866010/SRR9866010.sra Written 31566895 spots for SRR9866010/SRR9866010.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:11:05 31566895 reads; of these: 31566895 (100.00%) were paired; of these: 13402362 (42.46%) aligned concordantly 0 times 14047838 (44.50%) aligned concordantly exactly 1 time 4116695 (13.04%) aligned concordantly >1 times ---- 13402362 pairs aligned concordantly 0 times; of these: 7470215 (55.74%) aligned discordantly 1 time ---- 5932147 pairs aligned 0 times concordantly or discordantly; of these: 11864294 mates make up the pairs; of these: 8214836 (69.24%) aligned 0 times 1480643 (12.48%) aligned exactly 1 time 2168815 (18.28%) aligned >1 times 86.99% overall alignment rate Time searching: 01:11:05 Overall time: 01:11:05 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3201135 / 25066219 = 0.1277 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:24:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:24:22: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:24:22: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:24:32: 1000000 INFO @ Tue, 16 Jun 2020 11:24:41: 2000000 INFO @ Tue, 16 Jun 2020 11:24:50: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:24:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:24:52: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:24:52: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:24:59: 4000000 INFO @ Tue, 16 Jun 2020 11:25:01: 1000000 INFO @ Tue, 16 Jun 2020 11:25:08: 5000000 INFO @ Tue, 16 Jun 2020 11:25:09: 2000000 INFO @ Tue, 16 Jun 2020 11:25:17: 3000000 INFO @ Tue, 16 Jun 2020 11:25:18: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:25:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:25:22: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:25:22: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:25:25: 4000000 INFO @ Tue, 16 Jun 2020 11:25:27: 7000000 INFO @ Tue, 16 Jun 2020 11:25:31: 1000000 INFO @ Tue, 16 Jun 2020 11:25:34: 5000000 INFO @ Tue, 16 Jun 2020 11:25:36: 8000000 INFO @ Tue, 16 Jun 2020 11:25:39: 2000000 INFO @ Tue, 16 Jun 2020 11:25:42: 6000000 INFO @ Tue, 16 Jun 2020 11:25:46: 9000000 INFO @ Tue, 16 Jun 2020 11:25:48: 3000000 INFO @ Tue, 16 Jun 2020 11:25:50: 7000000 INFO @ Tue, 16 Jun 2020 11:25:55: 10000000 INFO @ Tue, 16 Jun 2020 11:25:56: 4000000 INFO @ Tue, 16 Jun 2020 11:25:58: 8000000 INFO @ Tue, 16 Jun 2020 11:26:04: 5000000 INFO @ Tue, 16 Jun 2020 11:26:05: 11000000 INFO @ Tue, 16 Jun 2020 11:26:07: 9000000 INFO @ Tue, 16 Jun 2020 11:26:13: 6000000 INFO @ Tue, 16 Jun 2020 11:26:15: 12000000 INFO @ Tue, 16 Jun 2020 11:26:15: 10000000 INFO @ Tue, 16 Jun 2020 11:26:21: 7000000 INFO @ Tue, 16 Jun 2020 11:26:23: 11000000 INFO @ Tue, 16 Jun 2020 11:26:24: 13000000 INFO @ Tue, 16 Jun 2020 11:26:29: 8000000 INFO @ Tue, 16 Jun 2020 11:26:32: 12000000 INFO @ Tue, 16 Jun 2020 11:26:34: 14000000 INFO @ Tue, 16 Jun 2020 11:26:37: 9000000 INFO @ Tue, 16 Jun 2020 11:26:40: 13000000 INFO @ Tue, 16 Jun 2020 11:26:43: 15000000 INFO @ Tue, 16 Jun 2020 11:26:46: 10000000 INFO @ Tue, 16 Jun 2020 11:26:48: 14000000 INFO @ Tue, 16 Jun 2020 11:26:53: 16000000 INFO @ Tue, 16 Jun 2020 11:26:54: 11000000 INFO @ Tue, 16 Jun 2020 11:26:57: 15000000 INFO @ Tue, 16 Jun 2020 11:27:02: 17000000 INFO @ Tue, 16 Jun 2020 11:27:03: 12000000 INFO @ Tue, 16 Jun 2020 11:27:05: 16000000 INFO @ Tue, 16 Jun 2020 11:27:11: 13000000 INFO @ Tue, 16 Jun 2020 11:27:12: 18000000 INFO @ Tue, 16 Jun 2020 11:27:13: 17000000 INFO @ Tue, 16 Jun 2020 11:27:19: 14000000 INFO @ Tue, 16 Jun 2020 11:27:21: 19000000 INFO @ Tue, 16 Jun 2020 11:27:22: 18000000 INFO @ Tue, 16 Jun 2020 11:27:28: 15000000 INFO @ Tue, 16 Jun 2020 11:27:30: 19000000 INFO @ Tue, 16 Jun 2020 11:27:31: 20000000 INFO @ Tue, 16 Jun 2020 11:27:36: 16000000 INFO @ Tue, 16 Jun 2020 11:27:38: 20000000 INFO @ Tue, 16 Jun 2020 11:27:40: 21000000 INFO @ Tue, 16 Jun 2020 11:27:45: 17000000 INFO @ Tue, 16 Jun 2020 11:27:47: 21000000 INFO @ Tue, 16 Jun 2020 11:27:50: 22000000 INFO @ Tue, 16 Jun 2020 11:27:53: 18000000 INFO @ Tue, 16 Jun 2020 11:27:56: 22000000 INFO @ Tue, 16 Jun 2020 11:27:59: 23000000 INFO @ Tue, 16 Jun 2020 11:28:02: 19000000 INFO @ Tue, 16 Jun 2020 11:28:06: 23000000 INFO @ Tue, 16 Jun 2020 11:28:08: 24000000 INFO @ Tue, 16 Jun 2020 11:28:11: 20000000 INFO @ Tue, 16 Jun 2020 11:28:16: 24000000 INFO @ Tue, 16 Jun 2020 11:28:16: 25000000 INFO @ Tue, 16 Jun 2020 11:28:19: 21000000 INFO @ Tue, 16 Jun 2020 11:28:25: 26000000 INFO @ Tue, 16 Jun 2020 11:28:26: 25000000 INFO @ Tue, 16 Jun 2020 11:28:28: 22000000 INFO @ Tue, 16 Jun 2020 11:28:33: 27000000 INFO @ Tue, 16 Jun 2020 11:28:35: 26000000 INFO @ Tue, 16 Jun 2020 11:28:37: 23000000 INFO @ Tue, 16 Jun 2020 11:28:42: 28000000 INFO @ Tue, 16 Jun 2020 11:28:45: 27000000 INFO @ Tue, 16 Jun 2020 11:28:47: 24000000 INFO @ Tue, 16 Jun 2020 11:28:50: 29000000 INFO @ Tue, 16 Jun 2020 11:28:55: 28000000 INFO @ Tue, 16 Jun 2020 11:28:57: 25000000 INFO @ Tue, 16 Jun 2020 11:28:59: 30000000 INFO @ Tue, 16 Jun 2020 11:29:05: 29000000 INFO @ Tue, 16 Jun 2020 11:29:07: 26000000 INFO @ Tue, 16 Jun 2020 11:29:07: 31000000 INFO @ Tue, 16 Jun 2020 11:29:14: 30000000 INFO @ Tue, 16 Jun 2020 11:29:16: 32000000 INFO @ Tue, 16 Jun 2020 11:29:16: 27000000 INFO @ Tue, 16 Jun 2020 11:29:24: 31000000 INFO @ Tue, 16 Jun 2020 11:29:25: 33000000 INFO @ Tue, 16 Jun 2020 11:29:26: 28000000 INFO @ Tue, 16 Jun 2020 11:29:34: 32000000 INFO @ Tue, 16 Jun 2020 11:29:35: 34000000 INFO @ Tue, 16 Jun 2020 11:29:36: 29000000 INFO @ Tue, 16 Jun 2020 11:29:42: 33000000 INFO @ Tue, 16 Jun 2020 11:29:45: 35000000 INFO @ Tue, 16 Jun 2020 11:29:46: 30000000 INFO @ Tue, 16 Jun 2020 11:29:51: 34000000 INFO @ Tue, 16 Jun 2020 11:29:55: 36000000 INFO @ Tue, 16 Jun 2020 11:29:55: 31000000 INFO @ Tue, 16 Jun 2020 11:29:59: 35000000 INFO @ Tue, 16 Jun 2020 11:30:05: 32000000 INFO @ Tue, 16 Jun 2020 11:30:05: 37000000 INFO @ Tue, 16 Jun 2020 11:30:07: 36000000 INFO @ Tue, 16 Jun 2020 11:30:14: 33000000 INFO @ Tue, 16 Jun 2020 11:30:15: 38000000 INFO @ Tue, 16 Jun 2020 11:30:16: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:30:22: 34000000 INFO @ Tue, 16 Jun 2020 11:30:24: 38000000 INFO @ Tue, 16 Jun 2020 11:30:25: 39000000 INFO @ Tue, 16 Jun 2020 11:30:31: 35000000 INFO @ Tue, 16 Jun 2020 11:30:33: 39000000 INFO @ Tue, 16 Jun 2020 11:30:35: 40000000 INFO @ Tue, 16 Jun 2020 11:30:39: 36000000 INFO @ Tue, 16 Jun 2020 11:30:42: 40000000 INFO @ Tue, 16 Jun 2020 11:30:45: 41000000 INFO @ Tue, 16 Jun 2020 11:30:48: 37000000 INFO @ Tue, 16 Jun 2020 11:30:51: 41000000 INFO @ Tue, 16 Jun 2020 11:30:55: 42000000 INFO @ Tue, 16 Jun 2020 11:30:56: 38000000 INFO @ Tue, 16 Jun 2020 11:31:00: 42000000 INFO @ Tue, 16 Jun 2020 11:31:05: 43000000 INFO @ Tue, 16 Jun 2020 11:31:05: 39000000 INFO @ Tue, 16 Jun 2020 11:31:09: 43000000 INFO @ Tue, 16 Jun 2020 11:31:14: 40000000 INFO @ Tue, 16 Jun 2020 11:31:14: 44000000 INFO @ Tue, 16 Jun 2020 11:31:18: 44000000 INFO @ Tue, 16 Jun 2020 11:31:22: 41000000 INFO @ Tue, 16 Jun 2020 11:31:24: 45000000 INFO @ Tue, 16 Jun 2020 11:31:27: 45000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:31:31: 42000000 INFO @ Tue, 16 Jun 2020 11:31:34: 46000000 INFO @ Tue, 16 Jun 2020 11:31:36: 46000000 INFO @ Tue, 16 Jun 2020 11:31:40: 43000000 INFO @ Tue, 16 Jun 2020 11:31:43: 47000000 INFO @ Tue, 16 Jun 2020 11:31:45: 47000000 INFO @ Tue, 16 Jun 2020 11:31:48: 44000000 INFO @ Tue, 16 Jun 2020 11:31:53: 48000000 INFO @ Tue, 16 Jun 2020 11:31:54: 48000000 INFO @ Tue, 16 Jun 2020 11:31:57: 45000000 INFO @ Tue, 16 Jun 2020 11:31:58: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:31:58: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:31:58: #1 total tags in treatment: 15717865 INFO @ Tue, 16 Jun 2020 11:31:58: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:31:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:31:59: #1 tags after filtering in treatment: 12677279 INFO @ Tue, 16 Jun 2020 11:31:59: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 11:31:59: #1 finished! INFO @ Tue, 16 Jun 2020 11:31:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:31:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:31:59: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:31:59: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:31:59: #1 total tags in treatment: 15717865 INFO @ Tue, 16 Jun 2020 11:31:59: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:31:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:31:59: #1 tags after filtering in treatment: 12677279 INFO @ Tue, 16 Jun 2020 11:31:59: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 11:31:59: #1 finished! INFO @ Tue, 16 Jun 2020 11:31:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:31:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:32:00: #2 number of paired peaks: 345 WARNING @ Tue, 16 Jun 2020 11:32:00: Fewer paired peaks (345) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 345 pairs to build model! INFO @ Tue, 16 Jun 2020 11:32:00: start model_add_line... INFO @ Tue, 16 Jun 2020 11:32:00: start X-correlation... INFO @ Tue, 16 Jun 2020 11:32:00: end of X-cor INFO @ Tue, 16 Jun 2020 11:32:00: #2 finished! INFO @ Tue, 16 Jun 2020 11:32:00: #2 predicted fragment length is 199 bps INFO @ Tue, 16 Jun 2020 11:32:00: #2 alternative fragment length(s) may be 199 bps INFO @ Tue, 16 Jun 2020 11:32:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.05_model.r WARNING @ Tue, 16 Jun 2020 11:32:00: #2 Since the d (199) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:32:00: #2 You may need to consider one of the other alternative d(s): 199 WARNING @ Tue, 16 Jun 2020 11:32:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:32:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:32:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:32:00: #2 number of paired peaks: 345 WARNING @ Tue, 16 Jun 2020 11:32:00: Fewer paired peaks (345) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 345 pairs to build model! INFO @ Tue, 16 Jun 2020 11:32:00: start model_add_line... INFO @ Tue, 16 Jun 2020 11:32:00: start X-correlation... INFO @ Tue, 16 Jun 2020 11:32:00: end of X-cor INFO @ Tue, 16 Jun 2020 11:32:00: #2 finished! INFO @ Tue, 16 Jun 2020 11:32:00: #2 predicted fragment length is 199 bps INFO @ Tue, 16 Jun 2020 11:32:00: #2 alternative fragment length(s) may be 199 bps INFO @ Tue, 16 Jun 2020 11:32:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.10_model.r WARNING @ Tue, 16 Jun 2020 11:32:00: #2 Since the d (199) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:32:00: #2 You may need to consider one of the other alternative d(s): 199 WARNING @ Tue, 16 Jun 2020 11:32:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:32:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:32:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:32:05: 46000000 INFO @ Tue, 16 Jun 2020 11:32:12: 47000000 INFO @ Tue, 16 Jun 2020 11:32:20: 48000000 INFO @ Tue, 16 Jun 2020 11:32:24: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:32:24: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:32:24: #1 total tags in treatment: 15717865 INFO @ Tue, 16 Jun 2020 11:32:24: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:32:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:32:25: #1 tags after filtering in treatment: 12677279 INFO @ Tue, 16 Jun 2020 11:32:25: #1 Redundant rate of treatment: 0.19 INFO @ Tue, 16 Jun 2020 11:32:25: #1 finished! INFO @ Tue, 16 Jun 2020 11:32:25: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:32:25: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:32:26: #2 number of paired peaks: 345 WARNING @ Tue, 16 Jun 2020 11:32:26: Fewer paired peaks (345) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 345 pairs to build model! INFO @ Tue, 16 Jun 2020 11:32:26: start model_add_line... INFO @ Tue, 16 Jun 2020 11:32:26: start X-correlation... INFO @ Tue, 16 Jun 2020 11:32:26: end of X-cor INFO @ Tue, 16 Jun 2020 11:32:26: #2 finished! INFO @ Tue, 16 Jun 2020 11:32:26: #2 predicted fragment length is 199 bps INFO @ Tue, 16 Jun 2020 11:32:26: #2 alternative fragment length(s) may be 199 bps INFO @ Tue, 16 Jun 2020 11:32:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.20_model.r WARNING @ Tue, 16 Jun 2020 11:32:26: #2 Since the d (199) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:32:26: #2 You may need to consider one of the other alternative d(s): 199 WARNING @ Tue, 16 Jun 2020 11:32:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:32:26: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:32:26: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:32:29: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:32:30: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:32:44: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:32:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:32:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.10_summits.bed INFO @ Tue, 16 Jun 2020 11:32:44: Done! INFO @ Tue, 16 Jun 2020 11:32:44: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:32:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:32:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.05_summits.bed INFO @ Tue, 16 Jun 2020 11:32:44: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (334 records, 4 fields): 1 millis CompletedMACS2peakCalling pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (526 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:32:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:33:09: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:33:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:33:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619599/SRX6619599.20_summits.bed INFO @ Tue, 16 Jun 2020 11:33:09: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (208 records, 4 fields): 1 millis CompletedMACS2peakCalling