Job ID = 6368889 SRX = SRX6619591 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:29:19 prefetch.2.10.7: 1) Downloading 'SRR9866018'... 2020-06-16T00:29:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:48:50 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:48:50 prefetch.2.10.7: 1) 'SRR9866018' was downloaded successfully 2020-06-16T00:48:50 prefetch.2.10.7: 'SRR9866018' has 0 unresolved dependencies Read 55365152 spots for SRR9866018/SRR9866018.sra Written 55365152 spots for SRR9866018/SRR9866018.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:50:55 55365152 reads; of these: 55365152 (100.00%) were paired; of these: 17146422 (30.97%) aligned concordantly 0 times 32071393 (57.93%) aligned concordantly exactly 1 time 6147337 (11.10%) aligned concordantly >1 times ---- 17146422 pairs aligned concordantly 0 times; of these: 10476106 (61.10%) aligned discordantly 1 time ---- 6670316 pairs aligned 0 times concordantly or discordantly; of these: 13340632 mates make up the pairs; of these: 7956764 (59.64%) aligned 0 times 2132390 (15.98%) aligned exactly 1 time 3251478 (24.37%) aligned >1 times 92.81% overall alignment rate Time searching: 01:50:55 Overall time: 01:50:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7505359 / 48362298 = 0.1552 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:28:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:28:01: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:28:01: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:28:09: 1000000 INFO @ Tue, 16 Jun 2020 12:28:17: 2000000 INFO @ Tue, 16 Jun 2020 12:28:25: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:28:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:28:31: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:28:31: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:28:33: 4000000 INFO @ Tue, 16 Jun 2020 12:28:39: 1000000 INFO @ Tue, 16 Jun 2020 12:28:42: 5000000 INFO @ Tue, 16 Jun 2020 12:28:46: 2000000 INFO @ Tue, 16 Jun 2020 12:28:51: 6000000 INFO @ Tue, 16 Jun 2020 12:28:54: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:29:00: 7000000 INFO @ Tue, 16 Jun 2020 12:29:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:29:01: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:29:01: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:29:01: 4000000 INFO @ Tue, 16 Jun 2020 12:29:09: 5000000 INFO @ Tue, 16 Jun 2020 12:29:09: 8000000 INFO @ Tue, 16 Jun 2020 12:29:11: 1000000 INFO @ Tue, 16 Jun 2020 12:29:17: 6000000 INFO @ Tue, 16 Jun 2020 12:29:18: 9000000 INFO @ Tue, 16 Jun 2020 12:29:20: 2000000 INFO @ Tue, 16 Jun 2020 12:29:24: 7000000 INFO @ Tue, 16 Jun 2020 12:29:27: 10000000 INFO @ Tue, 16 Jun 2020 12:29:30: 3000000 INFO @ Tue, 16 Jun 2020 12:29:32: 8000000 INFO @ Tue, 16 Jun 2020 12:29:37: 11000000 INFO @ Tue, 16 Jun 2020 12:29:39: 4000000 INFO @ Tue, 16 Jun 2020 12:29:40: 9000000 INFO @ Tue, 16 Jun 2020 12:29:46: 12000000 INFO @ Tue, 16 Jun 2020 12:29:48: 10000000 INFO @ Tue, 16 Jun 2020 12:29:48: 5000000 INFO @ Tue, 16 Jun 2020 12:29:55: 13000000 INFO @ Tue, 16 Jun 2020 12:29:55: 11000000 INFO @ Tue, 16 Jun 2020 12:29:57: 6000000 INFO @ Tue, 16 Jun 2020 12:30:03: 12000000 INFO @ Tue, 16 Jun 2020 12:30:04: 14000000 INFO @ Tue, 16 Jun 2020 12:30:07: 7000000 INFO @ Tue, 16 Jun 2020 12:30:11: 13000000 INFO @ Tue, 16 Jun 2020 12:30:13: 15000000 INFO @ Tue, 16 Jun 2020 12:30:16: 8000000 INFO @ Tue, 16 Jun 2020 12:30:18: 14000000 INFO @ Tue, 16 Jun 2020 12:30:22: 16000000 INFO @ Tue, 16 Jun 2020 12:30:25: 9000000 INFO @ Tue, 16 Jun 2020 12:30:26: 15000000 INFO @ Tue, 16 Jun 2020 12:30:31: 17000000 INFO @ Tue, 16 Jun 2020 12:30:33: 16000000 INFO @ Tue, 16 Jun 2020 12:30:34: 10000000 INFO @ Tue, 16 Jun 2020 12:30:41: 18000000 INFO @ Tue, 16 Jun 2020 12:30:41: 17000000 INFO @ Tue, 16 Jun 2020 12:30:44: 11000000 INFO @ Tue, 16 Jun 2020 12:30:48: 18000000 INFO @ Tue, 16 Jun 2020 12:30:50: 19000000 INFO @ Tue, 16 Jun 2020 12:30:53: 12000000 INFO @ Tue, 16 Jun 2020 12:30:56: 19000000 INFO @ Tue, 16 Jun 2020 12:30:59: 20000000 INFO @ Tue, 16 Jun 2020 12:31:03: 13000000 INFO @ Tue, 16 Jun 2020 12:31:03: 20000000 INFO @ Tue, 16 Jun 2020 12:31:08: 21000000 INFO @ Tue, 16 Jun 2020 12:31:11: 21000000 INFO @ Tue, 16 Jun 2020 12:31:12: 14000000 INFO @ Tue, 16 Jun 2020 12:31:18: 22000000 INFO @ Tue, 16 Jun 2020 12:31:19: 22000000 INFO @ Tue, 16 Jun 2020 12:31:22: 15000000 INFO @ Tue, 16 Jun 2020 12:31:27: 23000000 INFO @ Tue, 16 Jun 2020 12:31:28: 23000000 INFO @ Tue, 16 Jun 2020 12:31:31: 16000000 INFO @ Tue, 16 Jun 2020 12:31:37: 24000000 INFO @ Tue, 16 Jun 2020 12:31:38: 24000000 INFO @ Tue, 16 Jun 2020 12:31:40: 17000000 INFO @ Tue, 16 Jun 2020 12:31:47: 25000000 INFO @ Tue, 16 Jun 2020 12:31:48: 25000000 INFO @ Tue, 16 Jun 2020 12:31:50: 18000000 INFO @ Tue, 16 Jun 2020 12:31:57: 26000000 INFO @ Tue, 16 Jun 2020 12:31:57: 26000000 INFO @ Tue, 16 Jun 2020 12:31:59: 19000000 INFO @ Tue, 16 Jun 2020 12:32:06: 27000000 INFO @ Tue, 16 Jun 2020 12:32:07: 27000000 INFO @ Tue, 16 Jun 2020 12:32:08: 20000000 INFO @ Tue, 16 Jun 2020 12:32:15: 28000000 INFO @ Tue, 16 Jun 2020 12:32:16: 28000000 INFO @ Tue, 16 Jun 2020 12:32:17: 21000000 INFO @ Tue, 16 Jun 2020 12:32:24: 29000000 INFO @ Tue, 16 Jun 2020 12:32:25: 29000000 INFO @ Tue, 16 Jun 2020 12:32:26: 22000000 INFO @ Tue, 16 Jun 2020 12:32:34: 30000000 INFO @ Tue, 16 Jun 2020 12:32:34: 30000000 INFO @ Tue, 16 Jun 2020 12:32:35: 23000000 INFO @ Tue, 16 Jun 2020 12:32:43: 31000000 INFO @ Tue, 16 Jun 2020 12:32:43: 31000000 INFO @ Tue, 16 Jun 2020 12:32:44: 24000000 INFO @ Tue, 16 Jun 2020 12:32:51: 32000000 INFO @ Tue, 16 Jun 2020 12:32:52: 32000000 INFO @ Tue, 16 Jun 2020 12:32:53: 25000000 INFO @ Tue, 16 Jun 2020 12:33:00: 33000000 INFO @ Tue, 16 Jun 2020 12:33:01: 33000000 INFO @ Tue, 16 Jun 2020 12:33:02: 26000000 INFO @ Tue, 16 Jun 2020 12:33:09: 34000000 INFO @ Tue, 16 Jun 2020 12:33:10: 34000000 INFO @ Tue, 16 Jun 2020 12:33:11: 27000000 INFO @ Tue, 16 Jun 2020 12:33:18: 35000000 INFO @ Tue, 16 Jun 2020 12:33:19: 35000000 INFO @ Tue, 16 Jun 2020 12:33:20: 28000000 INFO @ Tue, 16 Jun 2020 12:33:27: 36000000 INFO @ Tue, 16 Jun 2020 12:33:28: 36000000 INFO @ Tue, 16 Jun 2020 12:33:29: 29000000 INFO @ Tue, 16 Jun 2020 12:33:36: 37000000 INFO @ Tue, 16 Jun 2020 12:33:37: 37000000 INFO @ Tue, 16 Jun 2020 12:33:38: 30000000 INFO @ Tue, 16 Jun 2020 12:33:45: 38000000 INFO @ Tue, 16 Jun 2020 12:33:46: 38000000 INFO @ Tue, 16 Jun 2020 12:33:47: 31000000 INFO @ Tue, 16 Jun 2020 12:33:54: 39000000 INFO @ Tue, 16 Jun 2020 12:33:55: 39000000 INFO @ Tue, 16 Jun 2020 12:33:55: 32000000 INFO @ Tue, 16 Jun 2020 12:34:03: 40000000 INFO @ Tue, 16 Jun 2020 12:34:03: 40000000 INFO @ Tue, 16 Jun 2020 12:34:04: 33000000 INFO @ Tue, 16 Jun 2020 12:34:11: 41000000 INFO @ Tue, 16 Jun 2020 12:34:12: 41000000 INFO @ Tue, 16 Jun 2020 12:34:13: 34000000 INFO @ Tue, 16 Jun 2020 12:34:20: 42000000 INFO @ Tue, 16 Jun 2020 12:34:21: 42000000 INFO @ Tue, 16 Jun 2020 12:34:22: 35000000 INFO @ Tue, 16 Jun 2020 12:34:29: 43000000 INFO @ Tue, 16 Jun 2020 12:34:30: 43000000 INFO @ Tue, 16 Jun 2020 12:34:31: 36000000 INFO @ Tue, 16 Jun 2020 12:34:38: 44000000 INFO @ Tue, 16 Jun 2020 12:34:39: 44000000 INFO @ Tue, 16 Jun 2020 12:34:39: 37000000 INFO @ Tue, 16 Jun 2020 12:34:47: 45000000 INFO @ Tue, 16 Jun 2020 12:34:47: 45000000 INFO @ Tue, 16 Jun 2020 12:34:48: 38000000 INFO @ Tue, 16 Jun 2020 12:34:56: 46000000 INFO @ Tue, 16 Jun 2020 12:34:56: 46000000 INFO @ Tue, 16 Jun 2020 12:34:57: 39000000 INFO @ Tue, 16 Jun 2020 12:35:05: 47000000 INFO @ Tue, 16 Jun 2020 12:35:05: 47000000 INFO @ Tue, 16 Jun 2020 12:35:06: 40000000 INFO @ Tue, 16 Jun 2020 12:35:13: 48000000 INFO @ Tue, 16 Jun 2020 12:35:14: 48000000 INFO @ Tue, 16 Jun 2020 12:35:15: 41000000 INFO @ Tue, 16 Jun 2020 12:35:22: 49000000 INFO @ Tue, 16 Jun 2020 12:35:23: 49000000 INFO @ Tue, 16 Jun 2020 12:35:24: 42000000 INFO @ Tue, 16 Jun 2020 12:35:31: 50000000 INFO @ Tue, 16 Jun 2020 12:35:32: 50000000 INFO @ Tue, 16 Jun 2020 12:35:33: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:35:40: 51000000 INFO @ Tue, 16 Jun 2020 12:35:41: 51000000 INFO @ Tue, 16 Jun 2020 12:35:42: 44000000 INFO @ Tue, 16 Jun 2020 12:35:49: 52000000 INFO @ Tue, 16 Jun 2020 12:35:50: 52000000 INFO @ Tue, 16 Jun 2020 12:35:51: 45000000 INFO @ Tue, 16 Jun 2020 12:35:58: 53000000 INFO @ Tue, 16 Jun 2020 12:35:58: 53000000 INFO @ Tue, 16 Jun 2020 12:36:00: 46000000 INFO @ Tue, 16 Jun 2020 12:36:06: 54000000 INFO @ Tue, 16 Jun 2020 12:36:07: 54000000 INFO @ Tue, 16 Jun 2020 12:36:08: 47000000 INFO @ Tue, 16 Jun 2020 12:36:15: 55000000 INFO @ Tue, 16 Jun 2020 12:36:16: 55000000 INFO @ Tue, 16 Jun 2020 12:36:17: 48000000 INFO @ Tue, 16 Jun 2020 12:36:23: 56000000 INFO @ Tue, 16 Jun 2020 12:36:24: 56000000 INFO @ Tue, 16 Jun 2020 12:36:26: 49000000 INFO @ Tue, 16 Jun 2020 12:36:32: 57000000 INFO @ Tue, 16 Jun 2020 12:36:32: 57000000 INFO @ Tue, 16 Jun 2020 12:36:35: 50000000 INFO @ Tue, 16 Jun 2020 12:36:40: 58000000 INFO @ Tue, 16 Jun 2020 12:36:40: 58000000 INFO @ Tue, 16 Jun 2020 12:36:44: 51000000 INFO @ Tue, 16 Jun 2020 12:36:48: 59000000 INFO @ Tue, 16 Jun 2020 12:36:49: 59000000 INFO @ Tue, 16 Jun 2020 12:36:53: 52000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:36:56: 60000000 INFO @ Tue, 16 Jun 2020 12:36:57: 60000000 INFO @ Tue, 16 Jun 2020 12:37:02: 53000000 INFO @ Tue, 16 Jun 2020 12:37:04: 61000000 INFO @ Tue, 16 Jun 2020 12:37:05: 61000000 INFO @ Tue, 16 Jun 2020 12:37:10: 54000000 INFO @ Tue, 16 Jun 2020 12:37:13: 62000000 INFO @ Tue, 16 Jun 2020 12:37:14: 62000000 INFO @ Tue, 16 Jun 2020 12:37:19: 55000000 INFO @ Tue, 16 Jun 2020 12:37:21: 63000000 INFO @ Tue, 16 Jun 2020 12:37:22: 63000000 INFO @ Tue, 16 Jun 2020 12:37:27: 56000000 INFO @ Tue, 16 Jun 2020 12:37:29: 64000000 INFO @ Tue, 16 Jun 2020 12:37:30: 64000000 INFO @ Tue, 16 Jun 2020 12:37:36: 57000000 INFO @ Tue, 16 Jun 2020 12:37:38: 65000000 INFO @ Tue, 16 Jun 2020 12:37:39: 65000000 INFO @ Tue, 16 Jun 2020 12:37:44: 58000000 INFO @ Tue, 16 Jun 2020 12:37:47: 66000000 INFO @ Tue, 16 Jun 2020 12:37:47: 66000000 INFO @ Tue, 16 Jun 2020 12:37:53: 59000000 INFO @ Tue, 16 Jun 2020 12:37:55: 67000000 INFO @ Tue, 16 Jun 2020 12:37:56: 67000000 INFO @ Tue, 16 Jun 2020 12:38:01: 60000000 INFO @ Tue, 16 Jun 2020 12:38:04: 68000000 INFO @ Tue, 16 Jun 2020 12:38:04: 68000000 INFO @ Tue, 16 Jun 2020 12:38:09: 61000000 INFO @ Tue, 16 Jun 2020 12:38:12: 69000000 INFO @ Tue, 16 Jun 2020 12:38:12: 69000000 INFO @ Tue, 16 Jun 2020 12:38:18: 62000000 INFO @ Tue, 16 Jun 2020 12:38:20: 70000000 INFO @ Tue, 16 Jun 2020 12:38:21: 70000000 INFO @ Tue, 16 Jun 2020 12:38:26: 63000000 INFO @ Tue, 16 Jun 2020 12:38:28: 71000000 INFO @ Tue, 16 Jun 2020 12:38:29: 71000000 INFO @ Tue, 16 Jun 2020 12:38:35: 64000000 INFO @ Tue, 16 Jun 2020 12:38:36: 72000000 INFO @ Tue, 16 Jun 2020 12:38:37: 72000000 INFO @ Tue, 16 Jun 2020 12:38:43: 65000000 INFO @ Tue, 16 Jun 2020 12:38:44: 73000000 INFO @ Tue, 16 Jun 2020 12:38:45: 73000000 INFO @ Tue, 16 Jun 2020 12:38:51: 66000000 INFO @ Tue, 16 Jun 2020 12:38:52: 74000000 INFO @ Tue, 16 Jun 2020 12:38:53: 74000000 INFO @ Tue, 16 Jun 2020 12:39:00: 67000000 INFO @ Tue, 16 Jun 2020 12:39:00: 75000000 INFO @ Tue, 16 Jun 2020 12:39:01: 75000000 INFO @ Tue, 16 Jun 2020 12:39:08: 68000000 INFO @ Tue, 16 Jun 2020 12:39:08: 76000000 INFO @ Tue, 16 Jun 2020 12:39:09: 76000000 INFO @ Tue, 16 Jun 2020 12:39:16: 77000000 INFO @ Tue, 16 Jun 2020 12:39:16: 69000000 INFO @ Tue, 16 Jun 2020 12:39:17: 77000000 INFO @ Tue, 16 Jun 2020 12:39:25: 70000000 INFO @ Tue, 16 Jun 2020 12:39:25: 78000000 INFO @ Tue, 16 Jun 2020 12:39:25: 78000000 INFO @ Tue, 16 Jun 2020 12:39:33: 71000000 INFO @ Tue, 16 Jun 2020 12:39:33: 79000000 INFO @ Tue, 16 Jun 2020 12:39:34: 79000000 INFO @ Tue, 16 Jun 2020 12:39:41: 72000000 INFO @ Tue, 16 Jun 2020 12:39:41: 80000000 INFO @ Tue, 16 Jun 2020 12:39:42: 80000000 INFO @ Tue, 16 Jun 2020 12:39:50: 73000000 INFO @ Tue, 16 Jun 2020 12:39:50: 81000000 INFO @ Tue, 16 Jun 2020 12:39:50: 81000000 INFO @ Tue, 16 Jun 2020 12:39:58: 74000000 INFO @ Tue, 16 Jun 2020 12:39:58: 82000000 INFO @ Tue, 16 Jun 2020 12:39:59: 82000000 INFO @ Tue, 16 Jun 2020 12:40:06: 75000000 INFO @ Tue, 16 Jun 2020 12:40:07: 83000000 INFO @ Tue, 16 Jun 2020 12:40:07: 83000000 INFO @ Tue, 16 Jun 2020 12:40:15: 84000000 INFO @ Tue, 16 Jun 2020 12:40:15: 76000000 INFO @ Tue, 16 Jun 2020 12:40:16: 84000000 INFO @ Tue, 16 Jun 2020 12:40:23: 85000000 INFO @ Tue, 16 Jun 2020 12:40:24: 77000000 INFO @ Tue, 16 Jun 2020 12:40:24: 85000000 INFO @ Tue, 16 Jun 2020 12:40:32: 86000000 INFO @ Tue, 16 Jun 2020 12:40:33: 86000000 INFO @ Tue, 16 Jun 2020 12:40:33: 78000000 INFO @ Tue, 16 Jun 2020 12:40:41: 87000000 INFO @ Tue, 16 Jun 2020 12:40:41: 87000000 INFO @ Tue, 16 Jun 2020 12:40:43: 79000000 INFO @ Tue, 16 Jun 2020 12:40:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:40:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:40:47: #1 total tags in treatment: 32129867 INFO @ Tue, 16 Jun 2020 12:40:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:40:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:40:48: #1 tags after filtering in treatment: 24659815 INFO @ Tue, 16 Jun 2020 12:40:48: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 12:40:48: #1 finished! INFO @ Tue, 16 Jun 2020 12:40:48: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:40:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:40:48: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:40:48: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:40:48: #1 total tags in treatment: 32129867 INFO @ Tue, 16 Jun 2020 12:40:48: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:40:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:40:49: #1 tags after filtering in treatment: 24659815 INFO @ Tue, 16 Jun 2020 12:40:49: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 12:40:49: #1 finished! INFO @ Tue, 16 Jun 2020 12:40:49: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:40:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:40:50: #2 number of paired peaks: 172 WARNING @ Tue, 16 Jun 2020 12:40:50: Fewer paired peaks (172) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 172 pairs to build model! INFO @ Tue, 16 Jun 2020 12:40:50: start model_add_line... INFO @ Tue, 16 Jun 2020 12:40:50: start X-correlation... INFO @ Tue, 16 Jun 2020 12:40:50: end of X-cor INFO @ Tue, 16 Jun 2020 12:40:50: #2 finished! INFO @ Tue, 16 Jun 2020 12:40:50: #2 predicted fragment length is 186 bps INFO @ Tue, 16 Jun 2020 12:40:50: #2 alternative fragment length(s) may be 3,186,199 bps INFO @ Tue, 16 Jun 2020 12:40:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.05_model.r WARNING @ Tue, 16 Jun 2020 12:40:50: #2 Since the d (186) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:40:50: #2 You may need to consider one of the other alternative d(s): 3,186,199 WARNING @ Tue, 16 Jun 2020 12:40:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:40:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:40:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:40:50: #2 number of paired peaks: 172 WARNING @ Tue, 16 Jun 2020 12:40:50: Fewer paired peaks (172) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 172 pairs to build model! INFO @ Tue, 16 Jun 2020 12:40:50: start model_add_line... INFO @ Tue, 16 Jun 2020 12:40:51: start X-correlation... INFO @ Tue, 16 Jun 2020 12:40:51: end of X-cor INFO @ Tue, 16 Jun 2020 12:40:51: #2 finished! INFO @ Tue, 16 Jun 2020 12:40:51: #2 predicted fragment length is 186 bps INFO @ Tue, 16 Jun 2020 12:40:51: #2 alternative fragment length(s) may be 3,186,199 bps INFO @ Tue, 16 Jun 2020 12:40:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.10_model.r WARNING @ Tue, 16 Jun 2020 12:40:51: #2 Since the d (186) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:40:51: #2 You may need to consider one of the other alternative d(s): 3,186,199 WARNING @ Tue, 16 Jun 2020 12:40:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:40:51: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:40:51: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:40:52: 80000000 INFO @ Tue, 16 Jun 2020 12:41:00: 81000000 INFO @ Tue, 16 Jun 2020 12:41:08: 82000000 INFO @ Tue, 16 Jun 2020 12:41:17: 83000000 INFO @ Tue, 16 Jun 2020 12:41:25: 84000000 INFO @ Tue, 16 Jun 2020 12:41:33: 85000000 INFO @ Tue, 16 Jun 2020 12:41:37: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:41:38: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:41:42: 86000000 INFO @ Tue, 16 Jun 2020 12:41:50: 87000000 INFO @ Tue, 16 Jun 2020 12:41:57: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:41:57: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:41:57: #1 total tags in treatment: 32129867 INFO @ Tue, 16 Jun 2020 12:41:57: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:41:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:41:57: #1 tags after filtering in treatment: 24659815 INFO @ Tue, 16 Jun 2020 12:41:57: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 12:41:57: #1 finished! INFO @ Tue, 16 Jun 2020 12:41:57: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:41:57: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:41:59: #2 number of paired peaks: 172 WARNING @ Tue, 16 Jun 2020 12:41:59: Fewer paired peaks (172) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 172 pairs to build model! INFO @ Tue, 16 Jun 2020 12:41:59: start model_add_line... INFO @ Tue, 16 Jun 2020 12:41:59: start X-correlation... INFO @ Tue, 16 Jun 2020 12:41:59: end of X-cor INFO @ Tue, 16 Jun 2020 12:41:59: #2 finished! INFO @ Tue, 16 Jun 2020 12:41:59: #2 predicted fragment length is 186 bps INFO @ Tue, 16 Jun 2020 12:41:59: #2 alternative fragment length(s) may be 3,186,199 bps INFO @ Tue, 16 Jun 2020 12:41:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.20_model.r WARNING @ Tue, 16 Jun 2020 12:41:59: #2 Since the d (186) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:41:59: #2 You may need to consider one of the other alternative d(s): 3,186,199 WARNING @ Tue, 16 Jun 2020 12:41:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:41:59: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:41:59: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:42:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:42:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:42:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:42:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.05_summits.bed INFO @ Tue, 16 Jun 2020 12:42:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:42:02: Done! INFO @ Tue, 16 Jun 2020 12:42:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.10_summits.bed INFO @ Tue, 16 Jun 2020 12:42:02: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (21825 records, 4 fields): 20 millis CompletedMACS2peakCalling pass1 - making usageList (7 chroms): 5 millis pass2 - checking and writing primary data (37493 records, 4 fields): 33 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:42:45: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:43:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:43:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:43:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619591/SRX6619591.20_summits.bed INFO @ Tue, 16 Jun 2020 12:43:08: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6071 records, 4 fields): 7 millis CompletedMACS2peakCalling