Job ID = 6368887 SRX = SRX6619589 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:40:44 prefetch.2.10.7: 1) Downloading 'SRR9866020'... 2020-06-16T00:40:44 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:57:47 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:57:47 prefetch.2.10.7: 1) 'SRR9866020' was downloaded successfully 2020-06-16T00:57:48 prefetch.2.10.7: 'SRR9866020' has 0 unresolved dependencies Read 39256378 spots for SRR9866020/SRR9866020.sra Written 39256378 spots for SRR9866020/SRR9866020.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:15:50 39256378 reads; of these: 39256378 (100.00%) were paired; of these: 15923889 (40.56%) aligned concordantly 0 times 19442769 (49.53%) aligned concordantly exactly 1 time 3889720 (9.91%) aligned concordantly >1 times ---- 15923889 pairs aligned concordantly 0 times; of these: 6462168 (40.58%) aligned discordantly 1 time ---- 9461721 pairs aligned 0 times concordantly or discordantly; of these: 18923442 mates make up the pairs; of these: 15939520 (84.23%) aligned 0 times 1006147 (5.32%) aligned exactly 1 time 1977775 (10.45%) aligned >1 times 79.70% overall alignment rate Time searching: 01:15:50 Overall time: 01:15:50 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4828943 / 29589028 = 0.1632 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:50:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:50:36: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:50:36: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:50:44: 1000000 INFO @ Tue, 16 Jun 2020 11:50:53: 2000000 INFO @ Tue, 16 Jun 2020 11:51:01: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:51:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:51:07: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:51:07: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:51:09: 4000000 INFO @ Tue, 16 Jun 2020 11:51:17: 1000000 INFO @ Tue, 16 Jun 2020 11:51:19: 5000000 INFO @ Tue, 16 Jun 2020 11:51:27: 2000000 INFO @ Tue, 16 Jun 2020 11:51:28: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:51:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:51:37: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:51:37: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:51:37: 3000000 INFO @ Tue, 16 Jun 2020 11:51:38: 7000000 INFO @ Tue, 16 Jun 2020 11:51:46: 1000000 INFO @ Tue, 16 Jun 2020 11:51:47: 8000000 INFO @ Tue, 16 Jun 2020 11:51:47: 4000000 INFO @ Tue, 16 Jun 2020 11:51:55: 2000000 INFO @ Tue, 16 Jun 2020 11:51:56: 9000000 INFO @ Tue, 16 Jun 2020 11:51:57: 5000000 INFO @ Tue, 16 Jun 2020 11:52:04: 3000000 INFO @ Tue, 16 Jun 2020 11:52:05: 10000000 INFO @ Tue, 16 Jun 2020 11:52:07: 6000000 INFO @ Tue, 16 Jun 2020 11:52:14: 4000000 INFO @ Tue, 16 Jun 2020 11:52:14: 11000000 INFO @ Tue, 16 Jun 2020 11:52:17: 7000000 INFO @ Tue, 16 Jun 2020 11:52:23: 5000000 INFO @ Tue, 16 Jun 2020 11:52:24: 12000000 INFO @ Tue, 16 Jun 2020 11:52:28: 8000000 INFO @ Tue, 16 Jun 2020 11:52:32: 6000000 INFO @ Tue, 16 Jun 2020 11:52:33: 13000000 INFO @ Tue, 16 Jun 2020 11:52:38: 9000000 INFO @ Tue, 16 Jun 2020 11:52:41: 7000000 INFO @ Tue, 16 Jun 2020 11:52:42: 14000000 INFO @ Tue, 16 Jun 2020 11:52:48: 10000000 INFO @ Tue, 16 Jun 2020 11:52:51: 8000000 INFO @ Tue, 16 Jun 2020 11:52:51: 15000000 INFO @ Tue, 16 Jun 2020 11:52:58: 11000000 INFO @ Tue, 16 Jun 2020 11:53:00: 9000000 INFO @ Tue, 16 Jun 2020 11:53:01: 16000000 INFO @ Tue, 16 Jun 2020 11:53:09: 12000000 INFO @ Tue, 16 Jun 2020 11:53:09: 10000000 INFO @ Tue, 16 Jun 2020 11:53:10: 17000000 INFO @ Tue, 16 Jun 2020 11:53:18: 11000000 INFO @ Tue, 16 Jun 2020 11:53:18: 13000000 INFO @ Tue, 16 Jun 2020 11:53:19: 18000000 INFO @ Tue, 16 Jun 2020 11:53:27: 12000000 INFO @ Tue, 16 Jun 2020 11:53:28: 19000000 INFO @ Tue, 16 Jun 2020 11:53:29: 14000000 INFO @ Tue, 16 Jun 2020 11:53:37: 13000000 INFO @ Tue, 16 Jun 2020 11:53:38: 20000000 INFO @ Tue, 16 Jun 2020 11:53:39: 15000000 INFO @ Tue, 16 Jun 2020 11:53:46: 14000000 INFO @ Tue, 16 Jun 2020 11:53:47: 21000000 INFO @ Tue, 16 Jun 2020 11:53:49: 16000000 INFO @ Tue, 16 Jun 2020 11:53:55: 15000000 INFO @ Tue, 16 Jun 2020 11:53:57: 22000000 INFO @ Tue, 16 Jun 2020 11:54:00: 17000000 INFO @ Tue, 16 Jun 2020 11:54:05: 16000000 INFO @ Tue, 16 Jun 2020 11:54:06: 23000000 INFO @ Tue, 16 Jun 2020 11:54:10: 18000000 INFO @ Tue, 16 Jun 2020 11:54:14: 17000000 INFO @ Tue, 16 Jun 2020 11:54:16: 24000000 INFO @ Tue, 16 Jun 2020 11:54:20: 19000000 INFO @ Tue, 16 Jun 2020 11:54:23: 18000000 INFO @ Tue, 16 Jun 2020 11:54:25: 25000000 INFO @ Tue, 16 Jun 2020 11:54:30: 20000000 INFO @ Tue, 16 Jun 2020 11:54:33: 19000000 INFO @ Tue, 16 Jun 2020 11:54:35: 26000000 INFO @ Tue, 16 Jun 2020 11:54:40: 21000000 INFO @ Tue, 16 Jun 2020 11:54:42: 20000000 INFO @ Tue, 16 Jun 2020 11:54:44: 27000000 INFO @ Tue, 16 Jun 2020 11:54:51: 22000000 INFO @ Tue, 16 Jun 2020 11:54:52: 21000000 INFO @ Tue, 16 Jun 2020 11:54:53: 28000000 INFO @ Tue, 16 Jun 2020 11:55:01: 23000000 INFO @ Tue, 16 Jun 2020 11:55:01: 22000000 INFO @ Tue, 16 Jun 2020 11:55:03: 29000000 INFO @ Tue, 16 Jun 2020 11:55:11: 24000000 INFO @ Tue, 16 Jun 2020 11:55:11: 23000000 INFO @ Tue, 16 Jun 2020 11:55:12: 30000000 INFO @ Tue, 16 Jun 2020 11:55:20: 24000000 INFO @ Tue, 16 Jun 2020 11:55:21: 25000000 INFO @ Tue, 16 Jun 2020 11:55:21: 31000000 INFO @ Tue, 16 Jun 2020 11:55:30: 25000000 INFO @ Tue, 16 Jun 2020 11:55:30: 32000000 INFO @ Tue, 16 Jun 2020 11:55:31: 26000000 INFO @ Tue, 16 Jun 2020 11:55:39: 26000000 INFO @ Tue, 16 Jun 2020 11:55:40: 33000000 INFO @ Tue, 16 Jun 2020 11:55:41: 27000000 INFO @ Tue, 16 Jun 2020 11:55:48: 27000000 INFO @ Tue, 16 Jun 2020 11:55:49: 34000000 INFO @ Tue, 16 Jun 2020 11:55:51: 28000000 INFO @ Tue, 16 Jun 2020 11:55:57: 28000000 INFO @ Tue, 16 Jun 2020 11:55:58: 35000000 INFO @ Tue, 16 Jun 2020 11:56:02: 29000000 INFO @ Tue, 16 Jun 2020 11:56:07: 29000000 INFO @ Tue, 16 Jun 2020 11:56:07: 36000000 INFO @ Tue, 16 Jun 2020 11:56:12: 30000000 INFO @ Tue, 16 Jun 2020 11:56:16: 30000000 INFO @ Tue, 16 Jun 2020 11:56:16: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:56:22: 31000000 INFO @ Tue, 16 Jun 2020 11:56:25: 31000000 INFO @ Tue, 16 Jun 2020 11:56:25: 38000000 INFO @ Tue, 16 Jun 2020 11:56:32: 32000000 INFO @ Tue, 16 Jun 2020 11:56:34: 32000000 INFO @ Tue, 16 Jun 2020 11:56:34: 39000000 INFO @ Tue, 16 Jun 2020 11:56:41: 33000000 INFO @ Tue, 16 Jun 2020 11:56:43: 40000000 INFO @ Tue, 16 Jun 2020 11:56:43: 33000000 INFO @ Tue, 16 Jun 2020 11:56:51: 34000000 INFO @ Tue, 16 Jun 2020 11:56:52: 41000000 INFO @ Tue, 16 Jun 2020 11:56:52: 34000000 INFO @ Tue, 16 Jun 2020 11:57:01: 42000000 INFO @ Tue, 16 Jun 2020 11:57:01: 35000000 INFO @ Tue, 16 Jun 2020 11:57:02: 35000000 INFO @ Tue, 16 Jun 2020 11:57:10: 43000000 INFO @ Tue, 16 Jun 2020 11:57:12: 36000000 INFO @ Tue, 16 Jun 2020 11:57:12: 36000000 INFO @ Tue, 16 Jun 2020 11:57:19: 44000000 INFO @ Tue, 16 Jun 2020 11:57:22: 37000000 INFO @ Tue, 16 Jun 2020 11:57:22: 37000000 INFO @ Tue, 16 Jun 2020 11:57:28: 45000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:57:32: 38000000 INFO @ Tue, 16 Jun 2020 11:57:33: 38000000 INFO @ Tue, 16 Jun 2020 11:57:36: 46000000 INFO @ Tue, 16 Jun 2020 11:57:42: 39000000 INFO @ Tue, 16 Jun 2020 11:57:43: 39000000 INFO @ Tue, 16 Jun 2020 11:57:45: 47000000 INFO @ Tue, 16 Jun 2020 11:57:52: 40000000 INFO @ Tue, 16 Jun 2020 11:57:52: 40000000 INFO @ Tue, 16 Jun 2020 11:57:54: 48000000 INFO @ Tue, 16 Jun 2020 11:58:02: 41000000 INFO @ Tue, 16 Jun 2020 11:58:03: 41000000 INFO @ Tue, 16 Jun 2020 11:58:03: 49000000 INFO @ Tue, 16 Jun 2020 11:58:11: 50000000 INFO @ Tue, 16 Jun 2020 11:58:12: 42000000 INFO @ Tue, 16 Jun 2020 11:58:13: 42000000 INFO @ Tue, 16 Jun 2020 11:58:20: 51000000 INFO @ Tue, 16 Jun 2020 11:58:23: 43000000 INFO @ Tue, 16 Jun 2020 11:58:23: 43000000 INFO @ Tue, 16 Jun 2020 11:58:29: 52000000 INFO @ Tue, 16 Jun 2020 11:58:34: 44000000 INFO @ Tue, 16 Jun 2020 11:58:34: 44000000 INFO @ Tue, 16 Jun 2020 11:58:38: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:58:38: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:58:38: #1 total tags in treatment: 19510741 INFO @ Tue, 16 Jun 2020 11:58:38: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:58:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:58:38: #1 tags after filtering in treatment: 16212837 INFO @ Tue, 16 Jun 2020 11:58:38: #1 Redundant rate of treatment: 0.17 INFO @ Tue, 16 Jun 2020 11:58:38: #1 finished! INFO @ Tue, 16 Jun 2020 11:58:38: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:58:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:58:39: #2 number of paired peaks: 303 WARNING @ Tue, 16 Jun 2020 11:58:39: Fewer paired peaks (303) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 303 pairs to build model! INFO @ Tue, 16 Jun 2020 11:58:39: start model_add_line... INFO @ Tue, 16 Jun 2020 11:58:39: start X-correlation... INFO @ Tue, 16 Jun 2020 11:58:39: end of X-cor INFO @ Tue, 16 Jun 2020 11:58:39: #2 finished! INFO @ Tue, 16 Jun 2020 11:58:39: #2 predicted fragment length is 216 bps INFO @ Tue, 16 Jun 2020 11:58:39: #2 alternative fragment length(s) may be 216 bps INFO @ Tue, 16 Jun 2020 11:58:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.05_model.r WARNING @ Tue, 16 Jun 2020 11:58:39: #2 Since the d (216) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:58:39: #2 You may need to consider one of the other alternative d(s): 216 WARNING @ Tue, 16 Jun 2020 11:58:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:58:39: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:58:39: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:58:46: 45000000 INFO @ Tue, 16 Jun 2020 11:58:46: 45000000 INFO @ Tue, 16 Jun 2020 11:58:57: 46000000 INFO @ Tue, 16 Jun 2020 11:58:58: 46000000 INFO @ Tue, 16 Jun 2020 11:59:09: 47000000 INFO @ Tue, 16 Jun 2020 11:59:09: 47000000 INFO @ Tue, 16 Jun 2020 11:59:18: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:59:20: 48000000 INFO @ Tue, 16 Jun 2020 11:59:21: 48000000 INFO @ Tue, 16 Jun 2020 11:59:32: 49000000 INFO @ Tue, 16 Jun 2020 11:59:32: 49000000 INFO @ Tue, 16 Jun 2020 11:59:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:59:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:59:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.05_summits.bed INFO @ Tue, 16 Jun 2020 11:59:39: Done! pass1 - making usageList (7 chroms): 4 millis pass2 - checking and writing primary data (25542 records, 4 fields): 25 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:59:43: 50000000 INFO @ Tue, 16 Jun 2020 11:59:44: 50000000 INFO @ Tue, 16 Jun 2020 11:59:54: 51000000 INFO @ Tue, 16 Jun 2020 11:59:55: 51000000 INFO @ Tue, 16 Jun 2020 12:00:05: 52000000 INFO @ Tue, 16 Jun 2020 12:00:06: 52000000 INFO @ Tue, 16 Jun 2020 12:00:15: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:00:15: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:00:15: #1 total tags in treatment: 19510741 INFO @ Tue, 16 Jun 2020 12:00:15: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:00:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:00:16: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:00:16: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:00:16: #1 total tags in treatment: 19510741 INFO @ Tue, 16 Jun 2020 12:00:16: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:00:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:00:16: #1 tags after filtering in treatment: 16212837 INFO @ Tue, 16 Jun 2020 12:00:16: #1 Redundant rate of treatment: 0.17 INFO @ Tue, 16 Jun 2020 12:00:16: #1 finished! INFO @ Tue, 16 Jun 2020 12:00:16: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:00:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:00:16: #1 tags after filtering in treatment: 16212837 INFO @ Tue, 16 Jun 2020 12:00:16: #1 Redundant rate of treatment: 0.17 INFO @ Tue, 16 Jun 2020 12:00:16: #1 finished! INFO @ Tue, 16 Jun 2020 12:00:16: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:00:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:00:17: #2 number of paired peaks: 303 WARNING @ Tue, 16 Jun 2020 12:00:17: Fewer paired peaks (303) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 303 pairs to build model! INFO @ Tue, 16 Jun 2020 12:00:17: start model_add_line... INFO @ Tue, 16 Jun 2020 12:00:17: start X-correlation... INFO @ Tue, 16 Jun 2020 12:00:17: end of X-cor INFO @ Tue, 16 Jun 2020 12:00:17: #2 finished! INFO @ Tue, 16 Jun 2020 12:00:17: #2 predicted fragment length is 216 bps INFO @ Tue, 16 Jun 2020 12:00:17: #2 alternative fragment length(s) may be 216 bps INFO @ Tue, 16 Jun 2020 12:00:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.10_model.r WARNING @ Tue, 16 Jun 2020 12:00:17: #2 Since the d (216) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:00:17: #2 You may need to consider one of the other alternative d(s): 216 WARNING @ Tue, 16 Jun 2020 12:00:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:00:17: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:00:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:00:17: #2 number of paired peaks: 303 WARNING @ Tue, 16 Jun 2020 12:00:17: Fewer paired peaks (303) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 303 pairs to build model! INFO @ Tue, 16 Jun 2020 12:00:17: start model_add_line... INFO @ Tue, 16 Jun 2020 12:00:17: start X-correlation... INFO @ Tue, 16 Jun 2020 12:00:17: end of X-cor INFO @ Tue, 16 Jun 2020 12:00:17: #2 finished! INFO @ Tue, 16 Jun 2020 12:00:17: #2 predicted fragment length is 216 bps INFO @ Tue, 16 Jun 2020 12:00:17: #2 alternative fragment length(s) may be 216 bps INFO @ Tue, 16 Jun 2020 12:00:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.20_model.r WARNING @ Tue, 16 Jun 2020 12:00:17: #2 Since the d (216) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:00:17: #2 You may need to consider one of the other alternative d(s): 216 WARNING @ Tue, 16 Jun 2020 12:00:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:00:17: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:00:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:00:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:00:56: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:01:15: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:01:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:01:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.10_summits.bed INFO @ Tue, 16 Jun 2020 12:01:15: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (11520 records, 4 fields): 13 millis INFO @ Tue, 16 Jun 2020 12:01:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.20_peaks.xls CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:01:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:01:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619589/SRX6619589.20_summits.bed INFO @ Tue, 16 Jun 2020 12:01:16: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1359 records, 4 fields): 3 millis CompletedMACS2peakCalling