Job ID = 6368883 SRX = SRX6619586 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:36:01 prefetch.2.10.7: 1) Downloading 'SRR9866023'... 2020-06-16T00:36:01 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:55:31 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:55:31 prefetch.2.10.7: 1) 'SRR9866023' was downloaded successfully 2020-06-16T00:55:31 prefetch.2.10.7: 'SRR9866023' has 0 unresolved dependencies Read 39945355 spots for SRR9866023/SRR9866023.sra Written 39945355 spots for SRR9866023/SRR9866023.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:18:09 39945355 reads; of these: 39945355 (100.00%) were paired; of these: 24326340 (60.90%) aligned concordantly 0 times 11721872 (29.34%) aligned concordantly exactly 1 time 3897143 (9.76%) aligned concordantly >1 times ---- 24326340 pairs aligned concordantly 0 times; of these: 9688311 (39.83%) aligned discordantly 1 time ---- 14638029 pairs aligned 0 times concordantly or discordantly; of these: 29276058 mates make up the pairs; of these: 25235990 (86.20%) aligned 0 times 1257251 (4.29%) aligned exactly 1 time 2782817 (9.51%) aligned >1 times 68.41% overall alignment rate Time searching: 01:18:10 Overall time: 01:18:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4004860 / 24903326 = 0.1608 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:47:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:47:56: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:47:56: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:48:02: 1000000 INFO @ Tue, 16 Jun 2020 11:48:08: 2000000 INFO @ Tue, 16 Jun 2020 11:48:14: 3000000 INFO @ Tue, 16 Jun 2020 11:48:20: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:48:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:48:26: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:48:26: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:48:26: 5000000 INFO @ Tue, 16 Jun 2020 11:48:33: 1000000 INFO @ Tue, 16 Jun 2020 11:48:33: 6000000 INFO @ Tue, 16 Jun 2020 11:48:39: 7000000 INFO @ Tue, 16 Jun 2020 11:48:39: 2000000 INFO @ Tue, 16 Jun 2020 11:48:45: 8000000 INFO @ Tue, 16 Jun 2020 11:48:46: 3000000 INFO @ Tue, 16 Jun 2020 11:48:52: 9000000 INFO @ Tue, 16 Jun 2020 11:48:53: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:48:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:48:56: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:48:56: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:48:58: 10000000 INFO @ Tue, 16 Jun 2020 11:48:59: 5000000 INFO @ Tue, 16 Jun 2020 11:49:03: 1000000 INFO @ Tue, 16 Jun 2020 11:49:05: 11000000 INFO @ Tue, 16 Jun 2020 11:49:06: 6000000 INFO @ Tue, 16 Jun 2020 11:49:09: 2000000 INFO @ Tue, 16 Jun 2020 11:49:11: 12000000 INFO @ Tue, 16 Jun 2020 11:49:12: 7000000 INFO @ Tue, 16 Jun 2020 11:49:16: 3000000 INFO @ Tue, 16 Jun 2020 11:49:18: 13000000 INFO @ Tue, 16 Jun 2020 11:49:19: 8000000 INFO @ Tue, 16 Jun 2020 11:49:22: 4000000 INFO @ Tue, 16 Jun 2020 11:49:25: 14000000 INFO @ Tue, 16 Jun 2020 11:49:26: 9000000 INFO @ Tue, 16 Jun 2020 11:49:29: 5000000 INFO @ Tue, 16 Jun 2020 11:49:32: 15000000 INFO @ Tue, 16 Jun 2020 11:49:32: 10000000 INFO @ Tue, 16 Jun 2020 11:49:35: 6000000 INFO @ Tue, 16 Jun 2020 11:49:39: 16000000 INFO @ Tue, 16 Jun 2020 11:49:39: 11000000 INFO @ Tue, 16 Jun 2020 11:49:41: 7000000 INFO @ Tue, 16 Jun 2020 11:49:46: 17000000 INFO @ Tue, 16 Jun 2020 11:49:46: 12000000 INFO @ Tue, 16 Jun 2020 11:49:48: 8000000 INFO @ Tue, 16 Jun 2020 11:49:53: 18000000 INFO @ Tue, 16 Jun 2020 11:49:53: 13000000 INFO @ Tue, 16 Jun 2020 11:49:54: 9000000 INFO @ Tue, 16 Jun 2020 11:50:00: 19000000 INFO @ Tue, 16 Jun 2020 11:50:00: 14000000 INFO @ Tue, 16 Jun 2020 11:50:01: 10000000 INFO @ Tue, 16 Jun 2020 11:50:06: 20000000 INFO @ Tue, 16 Jun 2020 11:50:07: 15000000 INFO @ Tue, 16 Jun 2020 11:50:07: 11000000 INFO @ Tue, 16 Jun 2020 11:50:13: 21000000 INFO @ Tue, 16 Jun 2020 11:50:14: 16000000 INFO @ Tue, 16 Jun 2020 11:50:14: 12000000 INFO @ Tue, 16 Jun 2020 11:50:20: 22000000 INFO @ Tue, 16 Jun 2020 11:50:20: 13000000 INFO @ Tue, 16 Jun 2020 11:50:21: 17000000 INFO @ Tue, 16 Jun 2020 11:50:27: 14000000 INFO @ Tue, 16 Jun 2020 11:50:27: 23000000 INFO @ Tue, 16 Jun 2020 11:50:28: 18000000 INFO @ Tue, 16 Jun 2020 11:50:34: 15000000 INFO @ Tue, 16 Jun 2020 11:50:34: 24000000 INFO @ Tue, 16 Jun 2020 11:50:35: 19000000 INFO @ Tue, 16 Jun 2020 11:50:41: 16000000 INFO @ Tue, 16 Jun 2020 11:50:42: 25000000 INFO @ Tue, 16 Jun 2020 11:50:42: 20000000 INFO @ Tue, 16 Jun 2020 11:50:48: 17000000 INFO @ Tue, 16 Jun 2020 11:50:49: 26000000 INFO @ Tue, 16 Jun 2020 11:50:49: 21000000 INFO @ Tue, 16 Jun 2020 11:50:54: 18000000 INFO @ Tue, 16 Jun 2020 11:50:56: 27000000 INFO @ Tue, 16 Jun 2020 11:50:56: 22000000 INFO @ Tue, 16 Jun 2020 11:51:01: 19000000 INFO @ Tue, 16 Jun 2020 11:51:03: 28000000 INFO @ Tue, 16 Jun 2020 11:51:03: 23000000 INFO @ Tue, 16 Jun 2020 11:51:08: 20000000 INFO @ Tue, 16 Jun 2020 11:51:10: 29000000 INFO @ Tue, 16 Jun 2020 11:51:10: 24000000 INFO @ Tue, 16 Jun 2020 11:51:15: 21000000 INFO @ Tue, 16 Jun 2020 11:51:17: 30000000 INFO @ Tue, 16 Jun 2020 11:51:17: 25000000 INFO @ Tue, 16 Jun 2020 11:51:22: 22000000 INFO @ Tue, 16 Jun 2020 11:51:24: 31000000 INFO @ Tue, 16 Jun 2020 11:51:24: 26000000 INFO @ Tue, 16 Jun 2020 11:51:29: 23000000 INFO @ Tue, 16 Jun 2020 11:51:31: 32000000 INFO @ Tue, 16 Jun 2020 11:51:31: 27000000 INFO @ Tue, 16 Jun 2020 11:51:35: 24000000 INFO @ Tue, 16 Jun 2020 11:51:38: 33000000 INFO @ Tue, 16 Jun 2020 11:51:38: 28000000 INFO @ Tue, 16 Jun 2020 11:51:42: 25000000 INFO @ Tue, 16 Jun 2020 11:51:45: 34000000 INFO @ Tue, 16 Jun 2020 11:51:45: 29000000 INFO @ Tue, 16 Jun 2020 11:51:49: 26000000 INFO @ Tue, 16 Jun 2020 11:51:52: 35000000 INFO @ Tue, 16 Jun 2020 11:51:52: 30000000 INFO @ Tue, 16 Jun 2020 11:51:55: 27000000 INFO @ Tue, 16 Jun 2020 11:51:59: 36000000 INFO @ Tue, 16 Jun 2020 11:51:59: 31000000 INFO @ Tue, 16 Jun 2020 11:52:02: 28000000 INFO @ Tue, 16 Jun 2020 11:52:06: 37000000 INFO @ Tue, 16 Jun 2020 11:52:06: 32000000 INFO @ Tue, 16 Jun 2020 11:52:09: 29000000 INFO @ Tue, 16 Jun 2020 11:52:12: 38000000 INFO @ Tue, 16 Jun 2020 11:52:13: 33000000 INFO @ Tue, 16 Jun 2020 11:52:16: 30000000 INFO @ Tue, 16 Jun 2020 11:52:19: 39000000 INFO @ Tue, 16 Jun 2020 11:52:20: 34000000 INFO @ Tue, 16 Jun 2020 11:52:22: 31000000 INFO @ Tue, 16 Jun 2020 11:52:26: 40000000 INFO @ Tue, 16 Jun 2020 11:52:27: 35000000 INFO @ Tue, 16 Jun 2020 11:52:29: 32000000 INFO @ Tue, 16 Jun 2020 11:52:33: 41000000 INFO @ Tue, 16 Jun 2020 11:52:34: 36000000 INFO @ Tue, 16 Jun 2020 11:52:35: 33000000 INFO @ Tue, 16 Jun 2020 11:52:40: 42000000 INFO @ Tue, 16 Jun 2020 11:52:41: 37000000 INFO @ Tue, 16 Jun 2020 11:52:42: 34000000 INFO @ Tue, 16 Jun 2020 11:52:47: 43000000 INFO @ Tue, 16 Jun 2020 11:52:47: 38000000 INFO @ Tue, 16 Jun 2020 11:52:48: 35000000 INFO @ Tue, 16 Jun 2020 11:52:53: 44000000 INFO @ Tue, 16 Jun 2020 11:52:54: 39000000 INFO @ Tue, 16 Jun 2020 11:52:55: 36000000 INFO @ Tue, 16 Jun 2020 11:53:00: 45000000 INFO @ Tue, 16 Jun 2020 11:53:00: 40000000 INFO @ Tue, 16 Jun 2020 11:53:01: 37000000 INFO @ Tue, 16 Jun 2020 11:53:06: 46000000 INFO @ Tue, 16 Jun 2020 11:53:07: 41000000 INFO @ Tue, 16 Jun 2020 11:53:08: 38000000 INFO @ Tue, 16 Jun 2020 11:53:11: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:53:11: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:53:11: #1 total tags in treatment: 12842995 INFO @ Tue, 16 Jun 2020 11:53:11: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:53:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:53:11: #1 tags after filtering in treatment: 10123492 INFO @ Tue, 16 Jun 2020 11:53:11: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:53:11: #1 finished! INFO @ Tue, 16 Jun 2020 11:53:11: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:53:11: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:53:12: #2 number of paired peaks: 393 WARNING @ Tue, 16 Jun 2020 11:53:12: Fewer paired peaks (393) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 393 pairs to build model! INFO @ Tue, 16 Jun 2020 11:53:12: start model_add_line... INFO @ Tue, 16 Jun 2020 11:53:12: start X-correlation... INFO @ Tue, 16 Jun 2020 11:53:12: end of X-cor INFO @ Tue, 16 Jun 2020 11:53:12: #2 finished! INFO @ Tue, 16 Jun 2020 11:53:12: #2 predicted fragment length is 213 bps INFO @ Tue, 16 Jun 2020 11:53:12: #2 alternative fragment length(s) may be 213 bps INFO @ Tue, 16 Jun 2020 11:53:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.05_model.r WARNING @ Tue, 16 Jun 2020 11:53:12: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:53:12: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Tue, 16 Jun 2020 11:53:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:53:12: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:53:12: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:53:14: 42000000 INFO @ Tue, 16 Jun 2020 11:53:14: 39000000 INFO @ Tue, 16 Jun 2020 11:53:20: 43000000 INFO @ Tue, 16 Jun 2020 11:53:21: 40000000 INFO @ Tue, 16 Jun 2020 11:53:27: 44000000 INFO @ Tue, 16 Jun 2020 11:53:27: 41000000 INFO @ Tue, 16 Jun 2020 11:53:33: 45000000 INFO @ Tue, 16 Jun 2020 11:53:34: 42000000 INFO @ Tue, 16 Jun 2020 11:53:36: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:53:40: 46000000 INFO @ Tue, 16 Jun 2020 11:53:41: 43000000 INFO @ Tue, 16 Jun 2020 11:53:45: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:53:45: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:53:45: #1 total tags in treatment: 12842995 INFO @ Tue, 16 Jun 2020 11:53:45: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:53:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:53:45: #1 tags after filtering in treatment: 10123492 INFO @ Tue, 16 Jun 2020 11:53:45: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:53:45: #1 finished! INFO @ Tue, 16 Jun 2020 11:53:45: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:53:45: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:53:45: #2 number of paired peaks: 393 WARNING @ Tue, 16 Jun 2020 11:53:45: Fewer paired peaks (393) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 393 pairs to build model! INFO @ Tue, 16 Jun 2020 11:53:45: start model_add_line... INFO @ Tue, 16 Jun 2020 11:53:46: start X-correlation... INFO @ Tue, 16 Jun 2020 11:53:46: end of X-cor INFO @ Tue, 16 Jun 2020 11:53:46: #2 finished! INFO @ Tue, 16 Jun 2020 11:53:46: #2 predicted fragment length is 213 bps INFO @ Tue, 16 Jun 2020 11:53:46: #2 alternative fragment length(s) may be 213 bps INFO @ Tue, 16 Jun 2020 11:53:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.10_model.r WARNING @ Tue, 16 Jun 2020 11:53:46: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:53:46: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Tue, 16 Jun 2020 11:53:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:53:46: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:53:46: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:53:47: 44000000 INFO @ Tue, 16 Jun 2020 11:53:48: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:53:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:53:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.05_summits.bed INFO @ Tue, 16 Jun 2020 11:53:48: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (988 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:53:54: 45000000 INFO @ Tue, 16 Jun 2020 11:54:00: 46000000 INFO @ Tue, 16 Jun 2020 11:54:05: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:54:05: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:54:05: #1 total tags in treatment: 12842995 INFO @ Tue, 16 Jun 2020 11:54:05: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:54:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:54:05: #1 tags after filtering in treatment: 10123492 INFO @ Tue, 16 Jun 2020 11:54:05: #1 Redundant rate of treatment: 0.21 INFO @ Tue, 16 Jun 2020 11:54:05: #1 finished! INFO @ Tue, 16 Jun 2020 11:54:05: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:54:05: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:54:06: #2 number of paired peaks: 393 WARNING @ Tue, 16 Jun 2020 11:54:06: Fewer paired peaks (393) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 393 pairs to build model! INFO @ Tue, 16 Jun 2020 11:54:06: start model_add_line... INFO @ Tue, 16 Jun 2020 11:54:06: start X-correlation... INFO @ Tue, 16 Jun 2020 11:54:06: end of X-cor INFO @ Tue, 16 Jun 2020 11:54:06: #2 finished! INFO @ Tue, 16 Jun 2020 11:54:06: #2 predicted fragment length is 213 bps INFO @ Tue, 16 Jun 2020 11:54:06: #2 alternative fragment length(s) may be 213 bps INFO @ Tue, 16 Jun 2020 11:54:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.20_model.r WARNING @ Tue, 16 Jun 2020 11:54:06: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:54:06: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Tue, 16 Jun 2020 11:54:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:54:06: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:54:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:54:09: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:54:20: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:54:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:54:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.10_summits.bed INFO @ Tue, 16 Jun 2020 11:54:20: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (433 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:54:29: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:54:41: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:54:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:54:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619586/SRX6619586.20_summits.bed INFO @ Tue, 16 Jun 2020 11:54:41: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (236 records, 4 fields): 2 millis CompletedMACS2peakCalling