Job ID = 6368880 SRX = SRX6619577 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:48:26 prefetch.2.10.7: 1) Downloading 'SRR9866032'... 2020-06-16T00:48:26 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T01:04:55 prefetch.2.10.7: HTTPS download succeed 2020-06-16T01:04:55 prefetch.2.10.7: 1) 'SRR9866032' was downloaded successfully 2020-06-16T01:04:55 prefetch.2.10.7: 'SRR9866032' has 0 unresolved dependencies Read 38061850 spots for SRR9866032/SRR9866032.sra Written 38061850 spots for SRR9866032/SRR9866032.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:37:17 38061850 reads; of these: 38061850 (100.00%) were paired; of these: 19380218 (50.92%) aligned concordantly 0 times 15384219 (40.42%) aligned concordantly exactly 1 time 3297413 (8.66%) aligned concordantly >1 times ---- 19380218 pairs aligned concordantly 0 times; of these: 9024315 (46.56%) aligned discordantly 1 time ---- 10355903 pairs aligned 0 times concordantly or discordantly; of these: 20711806 mates make up the pairs; of these: 17430737 (84.16%) aligned 0 times 1326997 (6.41%) aligned exactly 1 time 1954072 (9.43%) aligned >1 times 77.10% overall alignment rate Time searching: 01:37:17 Overall time: 01:37:17 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3400789 / 27225147 = 0.1249 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:23:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:23:20: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:23:20: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:23:29: 1000000 INFO @ Tue, 16 Jun 2020 12:23:38: 2000000 INFO @ Tue, 16 Jun 2020 12:23:48: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:23:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:23:50: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:23:50: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:23:57: 4000000 INFO @ Tue, 16 Jun 2020 12:24:01: 1000000 INFO @ Tue, 16 Jun 2020 12:24:06: 5000000 INFO @ Tue, 16 Jun 2020 12:24:11: 2000000 INFO @ Tue, 16 Jun 2020 12:24:16: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:24:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:24:20: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:24:20: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:24:21: 3000000 INFO @ Tue, 16 Jun 2020 12:24:25: 7000000 INFO @ Tue, 16 Jun 2020 12:24:32: 1000000 INFO @ Tue, 16 Jun 2020 12:24:32: 4000000 INFO @ Tue, 16 Jun 2020 12:24:35: 8000000 INFO @ Tue, 16 Jun 2020 12:24:43: 2000000 INFO @ Tue, 16 Jun 2020 12:24:43: 5000000 INFO @ Tue, 16 Jun 2020 12:24:44: 9000000 INFO @ Tue, 16 Jun 2020 12:24:54: 10000000 INFO @ Tue, 16 Jun 2020 12:24:54: 6000000 INFO @ Tue, 16 Jun 2020 12:24:55: 3000000 INFO @ Tue, 16 Jun 2020 12:25:03: 11000000 INFO @ Tue, 16 Jun 2020 12:25:06: 7000000 INFO @ Tue, 16 Jun 2020 12:25:06: 4000000 INFO @ Tue, 16 Jun 2020 12:25:13: 12000000 INFO @ Tue, 16 Jun 2020 12:25:17: 8000000 INFO @ Tue, 16 Jun 2020 12:25:18: 5000000 INFO @ Tue, 16 Jun 2020 12:25:23: 13000000 INFO @ Tue, 16 Jun 2020 12:25:28: 9000000 INFO @ Tue, 16 Jun 2020 12:25:30: 6000000 INFO @ Tue, 16 Jun 2020 12:25:33: 14000000 INFO @ Tue, 16 Jun 2020 12:25:40: 10000000 INFO @ Tue, 16 Jun 2020 12:25:41: 7000000 INFO @ Tue, 16 Jun 2020 12:25:43: 15000000 INFO @ Tue, 16 Jun 2020 12:25:51: 11000000 INFO @ Tue, 16 Jun 2020 12:25:53: 8000000 INFO @ Tue, 16 Jun 2020 12:25:53: 16000000 INFO @ Tue, 16 Jun 2020 12:26:03: 17000000 INFO @ Tue, 16 Jun 2020 12:26:03: 12000000 INFO @ Tue, 16 Jun 2020 12:26:04: 9000000 INFO @ Tue, 16 Jun 2020 12:26:13: 18000000 INFO @ Tue, 16 Jun 2020 12:26:15: 13000000 INFO @ Tue, 16 Jun 2020 12:26:16: 10000000 INFO @ Tue, 16 Jun 2020 12:26:23: 19000000 INFO @ Tue, 16 Jun 2020 12:26:26: 14000000 INFO @ Tue, 16 Jun 2020 12:26:27: 11000000 INFO @ Tue, 16 Jun 2020 12:26:33: 20000000 INFO @ Tue, 16 Jun 2020 12:26:37: 15000000 INFO @ Tue, 16 Jun 2020 12:26:39: 12000000 INFO @ Tue, 16 Jun 2020 12:26:42: 21000000 INFO @ Tue, 16 Jun 2020 12:26:49: 16000000 INFO @ Tue, 16 Jun 2020 12:26:50: 13000000 INFO @ Tue, 16 Jun 2020 12:26:52: 22000000 INFO @ Tue, 16 Jun 2020 12:27:00: 17000000 INFO @ Tue, 16 Jun 2020 12:27:01: 14000000 INFO @ Tue, 16 Jun 2020 12:27:03: 23000000 INFO @ Tue, 16 Jun 2020 12:27:11: 18000000 INFO @ Tue, 16 Jun 2020 12:27:12: 15000000 INFO @ Tue, 16 Jun 2020 12:27:13: 24000000 INFO @ Tue, 16 Jun 2020 12:27:22: 25000000 INFO @ Tue, 16 Jun 2020 12:27:23: 19000000 INFO @ Tue, 16 Jun 2020 12:27:24: 16000000 INFO @ Tue, 16 Jun 2020 12:27:32: 26000000 INFO @ Tue, 16 Jun 2020 12:27:34: 20000000 INFO @ Tue, 16 Jun 2020 12:27:35: 17000000 INFO @ Tue, 16 Jun 2020 12:27:42: 27000000 INFO @ Tue, 16 Jun 2020 12:27:44: 21000000 INFO @ Tue, 16 Jun 2020 12:27:46: 18000000 INFO @ Tue, 16 Jun 2020 12:27:51: 28000000 INFO @ Tue, 16 Jun 2020 12:27:55: 22000000 INFO @ Tue, 16 Jun 2020 12:27:57: 19000000 INFO @ Tue, 16 Jun 2020 12:28:01: 29000000 INFO @ Tue, 16 Jun 2020 12:28:06: 23000000 INFO @ Tue, 16 Jun 2020 12:28:08: 20000000 INFO @ Tue, 16 Jun 2020 12:28:10: 30000000 INFO @ Tue, 16 Jun 2020 12:28:17: 24000000 INFO @ Tue, 16 Jun 2020 12:28:19: 21000000 INFO @ Tue, 16 Jun 2020 12:28:20: 31000000 INFO @ Tue, 16 Jun 2020 12:28:28: 25000000 INFO @ Tue, 16 Jun 2020 12:28:29: 32000000 INFO @ Tue, 16 Jun 2020 12:28:30: 22000000 INFO @ Tue, 16 Jun 2020 12:28:39: 33000000 INFO @ Tue, 16 Jun 2020 12:28:39: 26000000 INFO @ Tue, 16 Jun 2020 12:28:41: 23000000 INFO @ Tue, 16 Jun 2020 12:28:48: 34000000 INFO @ Tue, 16 Jun 2020 12:28:51: 27000000 INFO @ Tue, 16 Jun 2020 12:28:52: 24000000 INFO @ Tue, 16 Jun 2020 12:28:58: 35000000 INFO @ Tue, 16 Jun 2020 12:29:02: 28000000 INFO @ Tue, 16 Jun 2020 12:29:03: 25000000 INFO @ Tue, 16 Jun 2020 12:29:08: 36000000 INFO @ Tue, 16 Jun 2020 12:29:13: 29000000 INFO @ Tue, 16 Jun 2020 12:29:15: 26000000 INFO @ Tue, 16 Jun 2020 12:29:18: 37000000 INFO @ Tue, 16 Jun 2020 12:29:25: 30000000 INFO @ Tue, 16 Jun 2020 12:29:27: 27000000 INFO @ Tue, 16 Jun 2020 12:29:28: 38000000 INFO @ Tue, 16 Jun 2020 12:29:37: 39000000 INFO @ Tue, 16 Jun 2020 12:29:37: 31000000 INFO @ Tue, 16 Jun 2020 12:29:39: 28000000 INFO @ Tue, 16 Jun 2020 12:29:47: 40000000 INFO @ Tue, 16 Jun 2020 12:29:49: 32000000 INFO @ Tue, 16 Jun 2020 12:29:51: 29000000 INFO @ Tue, 16 Jun 2020 12:29:58: 41000000 INFO @ Tue, 16 Jun 2020 12:30:02: 33000000 INFO @ Tue, 16 Jun 2020 12:30:03: 30000000 INFO @ Tue, 16 Jun 2020 12:30:08: 42000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:30:14: 34000000 INFO @ Tue, 16 Jun 2020 12:30:16: 31000000 INFO @ Tue, 16 Jun 2020 12:30:18: 43000000 INFO @ Tue, 16 Jun 2020 12:30:26: 35000000 INFO @ Tue, 16 Jun 2020 12:30:27: 32000000 INFO @ Tue, 16 Jun 2020 12:30:28: 44000000 INFO @ Tue, 16 Jun 2020 12:30:37: 36000000 INFO @ Tue, 16 Jun 2020 12:30:39: 33000000 INFO @ Tue, 16 Jun 2020 12:30:42: 45000000 INFO @ Tue, 16 Jun 2020 12:30:48: 37000000 INFO @ Tue, 16 Jun 2020 12:30:50: 34000000 INFO @ Tue, 16 Jun 2020 12:30:51: 46000000 INFO @ Tue, 16 Jun 2020 12:31:00: 38000000 INFO @ Tue, 16 Jun 2020 12:31:01: 47000000 INFO @ Tue, 16 Jun 2020 12:31:01: 35000000 INFO @ Tue, 16 Jun 2020 12:31:11: 48000000 INFO @ Tue, 16 Jun 2020 12:31:11: 39000000 INFO @ Tue, 16 Jun 2020 12:31:13: 36000000 INFO @ Tue, 16 Jun 2020 12:31:20: 49000000 INFO @ Tue, 16 Jun 2020 12:31:22: 40000000 INFO @ Tue, 16 Jun 2020 12:31:23: 37000000 INFO @ Tue, 16 Jun 2020 12:31:29: 50000000 INFO @ Tue, 16 Jun 2020 12:31:32: 41000000 INFO @ Tue, 16 Jun 2020 12:31:34: 38000000 INFO @ Tue, 16 Jun 2020 12:31:38: 51000000 INFO @ Tue, 16 Jun 2020 12:31:43: 42000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:31:45: 39000000 INFO @ Tue, 16 Jun 2020 12:31:46: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:31:46: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:31:46: #1 total tags in treatment: 16178624 INFO @ Tue, 16 Jun 2020 12:31:46: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:31:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:31:47: #1 tags after filtering in treatment: 13580705 INFO @ Tue, 16 Jun 2020 12:31:47: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 12:31:47: #1 finished! INFO @ Tue, 16 Jun 2020 12:31:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:31:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:31:48: #2 number of paired peaks: 264 WARNING @ Tue, 16 Jun 2020 12:31:48: Fewer paired peaks (264) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 264 pairs to build model! INFO @ Tue, 16 Jun 2020 12:31:48: start model_add_line... INFO @ Tue, 16 Jun 2020 12:31:48: start X-correlation... INFO @ Tue, 16 Jun 2020 12:31:48: end of X-cor INFO @ Tue, 16 Jun 2020 12:31:48: #2 finished! INFO @ Tue, 16 Jun 2020 12:31:48: #2 predicted fragment length is 198 bps INFO @ Tue, 16 Jun 2020 12:31:48: #2 alternative fragment length(s) may be 198 bps INFO @ Tue, 16 Jun 2020 12:31:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.05_model.r WARNING @ Tue, 16 Jun 2020 12:31:48: #2 Since the d (198) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:31:48: #2 You may need to consider one of the other alternative d(s): 198 WARNING @ Tue, 16 Jun 2020 12:31:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:31:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:31:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:31:53: 43000000 INFO @ Tue, 16 Jun 2020 12:31:56: 40000000 INFO @ Tue, 16 Jun 2020 12:32:04: 44000000 INFO @ Tue, 16 Jun 2020 12:32:07: 41000000 INFO @ Tue, 16 Jun 2020 12:32:15: 45000000 INFO @ Tue, 16 Jun 2020 12:32:15: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:32:17: 42000000 INFO @ Tue, 16 Jun 2020 12:32:25: 46000000 INFO @ Tue, 16 Jun 2020 12:32:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:32:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:32:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.05_summits.bed INFO @ Tue, 16 Jun 2020 12:32:28: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (577 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:32:28: 43000000 INFO @ Tue, 16 Jun 2020 12:32:36: 47000000 INFO @ Tue, 16 Jun 2020 12:32:39: 44000000 INFO @ Tue, 16 Jun 2020 12:32:46: 48000000 INFO @ Tue, 16 Jun 2020 12:32:49: 45000000 INFO @ Tue, 16 Jun 2020 12:32:57: 49000000 INFO @ Tue, 16 Jun 2020 12:33:00: 46000000 INFO @ Tue, 16 Jun 2020 12:33:08: 50000000 INFO @ Tue, 16 Jun 2020 12:33:11: 47000000 INFO @ Tue, 16 Jun 2020 12:33:19: 51000000 INFO @ Tue, 16 Jun 2020 12:33:22: 48000000 INFO @ Tue, 16 Jun 2020 12:33:28: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:33:28: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:33:28: #1 total tags in treatment: 16178624 INFO @ Tue, 16 Jun 2020 12:33:28: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:33:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:33:29: #1 tags after filtering in treatment: 13580705 INFO @ Tue, 16 Jun 2020 12:33:29: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 12:33:29: #1 finished! INFO @ Tue, 16 Jun 2020 12:33:29: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:33:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:33:29: #2 number of paired peaks: 264 WARNING @ Tue, 16 Jun 2020 12:33:29: Fewer paired peaks (264) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 264 pairs to build model! INFO @ Tue, 16 Jun 2020 12:33:29: start model_add_line... INFO @ Tue, 16 Jun 2020 12:33:30: start X-correlation... INFO @ Tue, 16 Jun 2020 12:33:30: end of X-cor INFO @ Tue, 16 Jun 2020 12:33:30: #2 finished! INFO @ Tue, 16 Jun 2020 12:33:30: #2 predicted fragment length is 198 bps INFO @ Tue, 16 Jun 2020 12:33:30: #2 alternative fragment length(s) may be 198 bps INFO @ Tue, 16 Jun 2020 12:33:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.10_model.r WARNING @ Tue, 16 Jun 2020 12:33:30: #2 Since the d (198) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:33:30: #2 You may need to consider one of the other alternative d(s): 198 WARNING @ Tue, 16 Jun 2020 12:33:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:33:30: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:33:30: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:33:32: 49000000 INFO @ Tue, 16 Jun 2020 12:33:43: 50000000 INFO @ Tue, 16 Jun 2020 12:33:53: 51000000 INFO @ Tue, 16 Jun 2020 12:33:57: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:34:02: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:34:02: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:34:02: #1 total tags in treatment: 16178624 INFO @ Tue, 16 Jun 2020 12:34:02: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:34:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:34:02: #1 tags after filtering in treatment: 13580705 INFO @ Tue, 16 Jun 2020 12:34:02: #1 Redundant rate of treatment: 0.16 INFO @ Tue, 16 Jun 2020 12:34:02: #1 finished! INFO @ Tue, 16 Jun 2020 12:34:02: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:34:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:34:03: #2 number of paired peaks: 264 WARNING @ Tue, 16 Jun 2020 12:34:03: Fewer paired peaks (264) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 264 pairs to build model! INFO @ Tue, 16 Jun 2020 12:34:03: start model_add_line... INFO @ Tue, 16 Jun 2020 12:34:03: start X-correlation... INFO @ Tue, 16 Jun 2020 12:34:03: end of X-cor INFO @ Tue, 16 Jun 2020 12:34:03: #2 finished! INFO @ Tue, 16 Jun 2020 12:34:03: #2 predicted fragment length is 198 bps INFO @ Tue, 16 Jun 2020 12:34:03: #2 alternative fragment length(s) may be 198 bps INFO @ Tue, 16 Jun 2020 12:34:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.20_model.r WARNING @ Tue, 16 Jun 2020 12:34:03: #2 Since the d (198) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:34:03: #2 You may need to consider one of the other alternative d(s): 198 WARNING @ Tue, 16 Jun 2020 12:34:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:34:03: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:34:03: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:34:10: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:34:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:34:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.10_summits.bed INFO @ Tue, 16 Jun 2020 12:34:10: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (377 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:34:30: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:34:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:34:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:34:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619577/SRX6619577.20_summits.bed INFO @ Tue, 16 Jun 2020 12:34:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (240 records, 4 fields): 1 millis CompletedMACS2peakCalling