Job ID = 6368875 SRX = SRX6619572 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:27 prefetch.2.10.7: 1) Downloading 'SRR9866037'... 2020-06-16T00:30:27 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:52:58 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:52:58 prefetch.2.10.7: 1) 'SRR9866037' was downloaded successfully 2020-06-16T00:52:58 prefetch.2.10.7: 'SRR9866037' has 0 unresolved dependencies Read 40085238 spots for SRR9866037/SRR9866037.sra Written 40085238 spots for SRR9866037/SRR9866037.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:07:55 40085238 reads; of these: 40085238 (100.00%) were paired; of these: 26022893 (64.92%) aligned concordantly 0 times 11649732 (29.06%) aligned concordantly exactly 1 time 2412613 (6.02%) aligned concordantly >1 times ---- 26022893 pairs aligned concordantly 0 times; of these: 11339565 (43.58%) aligned discordantly 1 time ---- 14683328 pairs aligned 0 times concordantly or discordantly; of these: 29366656 mates make up the pairs; of these: 26462411 (90.11%) aligned 0 times 1037610 (3.53%) aligned exactly 1 time 1866635 (6.36%) aligned >1 times 66.99% overall alignment rate Time searching: 01:07:55 Overall time: 01:07:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3762603 / 24881286 = 0.1512 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:32:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:32:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:32:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:32:28: 1000000 INFO @ Tue, 16 Jun 2020 11:32:39: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:32:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:32:47: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:32:47: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:32:50: 3000000 INFO @ Tue, 16 Jun 2020 11:33:00: 1000000 INFO @ Tue, 16 Jun 2020 11:33:03: 4000000 INFO @ Tue, 16 Jun 2020 11:33:15: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:33:17: 5000000 INFO @ Tue, 16 Jun 2020 11:33:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:33:17: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:33:17: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:33:29: 3000000 INFO @ Tue, 16 Jun 2020 11:33:30: 6000000 INFO @ Tue, 16 Jun 2020 11:33:30: 1000000 INFO @ Tue, 16 Jun 2020 11:33:44: 4000000 INFO @ Tue, 16 Jun 2020 11:33:44: 2000000 INFO @ Tue, 16 Jun 2020 11:33:44: 7000000 INFO @ Tue, 16 Jun 2020 11:33:57: 3000000 INFO @ Tue, 16 Jun 2020 11:33:58: 8000000 INFO @ Tue, 16 Jun 2020 11:33:59: 5000000 INFO @ Tue, 16 Jun 2020 11:34:11: 4000000 INFO @ Tue, 16 Jun 2020 11:34:12: 9000000 INFO @ Tue, 16 Jun 2020 11:34:13: 6000000 INFO @ Tue, 16 Jun 2020 11:34:25: 5000000 INFO @ Tue, 16 Jun 2020 11:34:26: 10000000 INFO @ Tue, 16 Jun 2020 11:34:28: 7000000 INFO @ Tue, 16 Jun 2020 11:34:38: 6000000 INFO @ Tue, 16 Jun 2020 11:34:39: 11000000 INFO @ Tue, 16 Jun 2020 11:34:43: 8000000 INFO @ Tue, 16 Jun 2020 11:34:52: 7000000 INFO @ Tue, 16 Jun 2020 11:34:53: 12000000 INFO @ Tue, 16 Jun 2020 11:34:58: 9000000 INFO @ Tue, 16 Jun 2020 11:35:05: 8000000 INFO @ Tue, 16 Jun 2020 11:35:07: 13000000 INFO @ Tue, 16 Jun 2020 11:35:12: 10000000 INFO @ Tue, 16 Jun 2020 11:35:18: 9000000 INFO @ Tue, 16 Jun 2020 11:35:21: 14000000 INFO @ Tue, 16 Jun 2020 11:35:27: 11000000 INFO @ Tue, 16 Jun 2020 11:35:31: 10000000 INFO @ Tue, 16 Jun 2020 11:35:34: 15000000 INFO @ Tue, 16 Jun 2020 11:35:41: 12000000 INFO @ Tue, 16 Jun 2020 11:35:43: 11000000 INFO @ Tue, 16 Jun 2020 11:35:47: 16000000 INFO @ Tue, 16 Jun 2020 11:35:55: 13000000 INFO @ Tue, 16 Jun 2020 11:35:56: 12000000 INFO @ Tue, 16 Jun 2020 11:36:00: 17000000 INFO @ Tue, 16 Jun 2020 11:36:09: 14000000 INFO @ Tue, 16 Jun 2020 11:36:09: 13000000 INFO @ Tue, 16 Jun 2020 11:36:13: 18000000 INFO @ Tue, 16 Jun 2020 11:36:22: 14000000 INFO @ Tue, 16 Jun 2020 11:36:22: 15000000 INFO @ Tue, 16 Jun 2020 11:36:26: 19000000 INFO @ Tue, 16 Jun 2020 11:36:35: 15000000 INFO @ Tue, 16 Jun 2020 11:36:35: 16000000 INFO @ Tue, 16 Jun 2020 11:36:39: 20000000 INFO @ Tue, 16 Jun 2020 11:36:47: 16000000 INFO @ Tue, 16 Jun 2020 11:36:48: 17000000 INFO @ Tue, 16 Jun 2020 11:36:52: 21000000 INFO @ Tue, 16 Jun 2020 11:37:00: 17000000 INFO @ Tue, 16 Jun 2020 11:37:02: 18000000 INFO @ Tue, 16 Jun 2020 11:37:06: 22000000 INFO @ Tue, 16 Jun 2020 11:37:13: 18000000 INFO @ Tue, 16 Jun 2020 11:37:15: 19000000 INFO @ Tue, 16 Jun 2020 11:37:19: 23000000 INFO @ Tue, 16 Jun 2020 11:37:25: 19000000 INFO @ Tue, 16 Jun 2020 11:37:28: 20000000 INFO @ Tue, 16 Jun 2020 11:37:32: 24000000 INFO @ Tue, 16 Jun 2020 11:37:38: 20000000 INFO @ Tue, 16 Jun 2020 11:37:41: 21000000 INFO @ Tue, 16 Jun 2020 11:37:45: 25000000 INFO @ Tue, 16 Jun 2020 11:37:50: 21000000 INFO @ Tue, 16 Jun 2020 11:37:54: 22000000 INFO @ Tue, 16 Jun 2020 11:37:58: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:38:03: 22000000 INFO @ Tue, 16 Jun 2020 11:38:08: 23000000 INFO @ Tue, 16 Jun 2020 11:38:11: 27000000 INFO @ Tue, 16 Jun 2020 11:38:15: 23000000 INFO @ Tue, 16 Jun 2020 11:38:21: 24000000 INFO @ Tue, 16 Jun 2020 11:38:24: 28000000 INFO @ Tue, 16 Jun 2020 11:38:28: 24000000 INFO @ Tue, 16 Jun 2020 11:38:34: 25000000 INFO @ Tue, 16 Jun 2020 11:38:37: 29000000 INFO @ Tue, 16 Jun 2020 11:38:41: 25000000 INFO @ Tue, 16 Jun 2020 11:38:47: 26000000 INFO @ Tue, 16 Jun 2020 11:38:50: 30000000 INFO @ Tue, 16 Jun 2020 11:38:53: 26000000 INFO @ Tue, 16 Jun 2020 11:39:00: 27000000 INFO @ Tue, 16 Jun 2020 11:39:03: 31000000 INFO @ Tue, 16 Jun 2020 11:39:06: 27000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:39:12: 28000000 INFO @ Tue, 16 Jun 2020 11:39:15: 32000000 INFO @ Tue, 16 Jun 2020 11:39:18: 28000000 INFO @ Tue, 16 Jun 2020 11:39:25: 29000000 INFO @ Tue, 16 Jun 2020 11:39:28: 33000000 INFO @ Tue, 16 Jun 2020 11:39:30: 29000000 INFO @ Tue, 16 Jun 2020 11:39:38: 30000000 INFO @ Tue, 16 Jun 2020 11:39:40: 34000000 INFO @ Tue, 16 Jun 2020 11:39:42: 30000000 INFO @ Tue, 16 Jun 2020 11:39:51: 31000000 INFO @ Tue, 16 Jun 2020 11:39:53: 35000000 INFO @ Tue, 16 Jun 2020 11:39:54: 31000000 INFO @ Tue, 16 Jun 2020 11:40:03: 32000000 INFO @ Tue, 16 Jun 2020 11:40:05: 32000000 INFO @ Tue, 16 Jun 2020 11:40:05: 36000000 INFO @ Tue, 16 Jun 2020 11:40:16: 33000000 INFO @ Tue, 16 Jun 2020 11:40:17: 33000000 INFO @ Tue, 16 Jun 2020 11:40:18: 37000000 INFO @ Tue, 16 Jun 2020 11:40:28: 34000000 INFO @ Tue, 16 Jun 2020 11:40:29: 34000000 INFO @ Tue, 16 Jun 2020 11:40:31: 38000000 INFO @ Tue, 16 Jun 2020 11:40:41: 35000000 INFO @ Tue, 16 Jun 2020 11:40:42: 35000000 INFO @ Tue, 16 Jun 2020 11:40:44: 39000000 INFO @ Tue, 16 Jun 2020 11:40:54: 36000000 INFO @ Tue, 16 Jun 2020 11:40:55: 36000000 INFO @ Tue, 16 Jun 2020 11:40:57: 40000000 INFO @ Tue, 16 Jun 2020 11:41:08: 37000000 INFO @ Tue, 16 Jun 2020 11:41:08: 37000000 INFO @ Tue, 16 Jun 2020 11:41:10: 41000000 INFO @ Tue, 16 Jun 2020 11:41:21: 38000000 INFO @ Tue, 16 Jun 2020 11:41:22: 38000000 INFO @ Tue, 16 Jun 2020 11:41:23: 42000000 INFO @ Tue, 16 Jun 2020 11:41:34: 39000000 INFO @ Tue, 16 Jun 2020 11:41:35: 39000000 INFO @ Tue, 16 Jun 2020 11:41:37: 43000000 INFO @ Tue, 16 Jun 2020 11:41:48: 40000000 INFO @ Tue, 16 Jun 2020 11:41:49: 40000000 INFO @ Tue, 16 Jun 2020 11:41:50: 44000000 INFO @ Tue, 16 Jun 2020 11:42:01: 41000000 INFO @ Tue, 16 Jun 2020 11:42:02: 41000000 INFO @ Tue, 16 Jun 2020 11:42:04: 45000000 INFO @ Tue, 16 Jun 2020 11:42:15: 42000000 INFO @ Tue, 16 Jun 2020 11:42:16: 42000000 INFO @ Tue, 16 Jun 2020 11:42:17: 46000000 INFO @ Tue, 16 Jun 2020 11:42:19: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:42:19: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:42:19: #1 total tags in treatment: 11761727 INFO @ Tue, 16 Jun 2020 11:42:19: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:42:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:42:19: #1 tags after filtering in treatment: 10058399 INFO @ Tue, 16 Jun 2020 11:42:19: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:42:19: #1 finished! INFO @ Tue, 16 Jun 2020 11:42:19: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:42:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:42:20: #2 number of paired peaks: 298 WARNING @ Tue, 16 Jun 2020 11:42:20: Fewer paired peaks (298) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 298 pairs to build model! INFO @ Tue, 16 Jun 2020 11:42:20: start model_add_line... INFO @ Tue, 16 Jun 2020 11:42:20: start X-correlation... INFO @ Tue, 16 Jun 2020 11:42:20: end of X-cor INFO @ Tue, 16 Jun 2020 11:42:20: #2 finished! INFO @ Tue, 16 Jun 2020 11:42:20: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:42:20: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:42:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.05_model.r WARNING @ Tue, 16 Jun 2020 11:42:20: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:42:20: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:42:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:42:20: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:42:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:42:28: 43000000 INFO @ Tue, 16 Jun 2020 11:42:29: 43000000 INFO @ Tue, 16 Jun 2020 11:42:41: 44000000 INFO @ Tue, 16 Jun 2020 11:42:42: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:42:42: 44000000 INFO @ Tue, 16 Jun 2020 11:42:52: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:42:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:42:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.05_summits.bed INFO @ Tue, 16 Jun 2020 11:42:52: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (488 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:42:54: 45000000 INFO @ Tue, 16 Jun 2020 11:42:55: 45000000 INFO @ Tue, 16 Jun 2020 11:43:08: 46000000 INFO @ Tue, 16 Jun 2020 11:43:08: 46000000 INFO @ Tue, 16 Jun 2020 11:43:10: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:43:10: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:43:10: #1 total tags in treatment: 11761727 INFO @ Tue, 16 Jun 2020 11:43:10: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:43:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:43:10: #1 tags after filtering in treatment: 10058399 INFO @ Tue, 16 Jun 2020 11:43:10: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:43:10: #1 finished! INFO @ Tue, 16 Jun 2020 11:43:10: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:43:10: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:43:11: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:43:11: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:43:11: #1 total tags in treatment: 11761727 INFO @ Tue, 16 Jun 2020 11:43:11: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:43:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:43:11: #2 number of paired peaks: 298 WARNING @ Tue, 16 Jun 2020 11:43:11: Fewer paired peaks (298) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 298 pairs to build model! INFO @ Tue, 16 Jun 2020 11:43:11: start model_add_line... INFO @ Tue, 16 Jun 2020 11:43:11: #1 tags after filtering in treatment: 10058399 INFO @ Tue, 16 Jun 2020 11:43:11: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:43:11: #1 finished! INFO @ Tue, 16 Jun 2020 11:43:11: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:43:11: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:43:11: start X-correlation... INFO @ Tue, 16 Jun 2020 11:43:11: end of X-cor INFO @ Tue, 16 Jun 2020 11:43:11: #2 finished! INFO @ Tue, 16 Jun 2020 11:43:11: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:43:11: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:43:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.10_model.r WARNING @ Tue, 16 Jun 2020 11:43:11: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:43:11: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:43:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:43:11: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:43:11: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:43:12: #2 number of paired peaks: 298 WARNING @ Tue, 16 Jun 2020 11:43:12: Fewer paired peaks (298) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 298 pairs to build model! INFO @ Tue, 16 Jun 2020 11:43:12: start model_add_line... INFO @ Tue, 16 Jun 2020 11:43:12: start X-correlation... INFO @ Tue, 16 Jun 2020 11:43:12: end of X-cor INFO @ Tue, 16 Jun 2020 11:43:12: #2 finished! INFO @ Tue, 16 Jun 2020 11:43:12: #2 predicted fragment length is 220 bps INFO @ Tue, 16 Jun 2020 11:43:12: #2 alternative fragment length(s) may be 220 bps INFO @ Tue, 16 Jun 2020 11:43:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.20_model.r WARNING @ Tue, 16 Jun 2020 11:43:12: #2 Since the d (220) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:43:12: #2 You may need to consider one of the other alternative d(s): 220 WARNING @ Tue, 16 Jun 2020 11:43:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:43:12: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:43:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:43:33: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:43:33: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:43:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:43:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:43:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.10_summits.bed INFO @ Tue, 16 Jun 2020 11:43:43: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (335 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:43:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:43:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:43:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619572/SRX6619572.20_summits.bed INFO @ Tue, 16 Jun 2020 11:43:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (221 records, 4 fields): 1 millis CompletedMACS2peakCalling