Job ID = 6368870 SRX = SRX6619568 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:27:49 prefetch.2.10.7: 1) Downloading 'SRR9866041'... 2020-06-16T00:27:49 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:38:37 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:38:37 prefetch.2.10.7: 1) 'SRR9866041' was downloaded successfully 2020-06-16T00:38:37 prefetch.2.10.7: 'SRR9866041' has 0 unresolved dependencies Read 30682782 spots for SRR9866041/SRR9866041.sra Written 30682782 spots for SRR9866041/SRR9866041.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:02:13 30682782 reads; of these: 30682782 (100.00%) were paired; of these: 10931531 (35.63%) aligned concordantly 0 times 16807222 (54.78%) aligned concordantly exactly 1 time 2944029 (9.60%) aligned concordantly >1 times ---- 10931531 pairs aligned concordantly 0 times; of these: 5599581 (51.22%) aligned discordantly 1 time ---- 5331950 pairs aligned 0 times concordantly or discordantly; of these: 10663900 mates make up the pairs; of these: 8949385 (83.92%) aligned 0 times 642168 (6.02%) aligned exactly 1 time 1072347 (10.06%) aligned >1 times 85.42% overall alignment rate Time searching: 01:02:13 Overall time: 01:02:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2739055 / 24960436 = 0.1097 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:11:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:11:28: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:11:28: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:11:38: 1000000 INFO @ Tue, 16 Jun 2020 11:11:47: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:11:57: 3000000 INFO @ Tue, 16 Jun 2020 11:11:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:11:58: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:11:58: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:12:07: 4000000 INFO @ Tue, 16 Jun 2020 11:12:09: 1000000 INFO @ Tue, 16 Jun 2020 11:12:18: 5000000 INFO @ Tue, 16 Jun 2020 11:12:20: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:12:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:12:28: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:12:28: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:12:28: 6000000 INFO @ Tue, 16 Jun 2020 11:12:32: 3000000 INFO @ Tue, 16 Jun 2020 11:12:37: 1000000 INFO @ Tue, 16 Jun 2020 11:12:39: 7000000 INFO @ Tue, 16 Jun 2020 11:12:43: 4000000 INFO @ Tue, 16 Jun 2020 11:12:47: 2000000 INFO @ Tue, 16 Jun 2020 11:12:49: 8000000 INFO @ Tue, 16 Jun 2020 11:12:54: 5000000 INFO @ Tue, 16 Jun 2020 11:12:56: 3000000 INFO @ Tue, 16 Jun 2020 11:13:00: 9000000 INFO @ Tue, 16 Jun 2020 11:13:05: 6000000 INFO @ Tue, 16 Jun 2020 11:13:06: 4000000 INFO @ Tue, 16 Jun 2020 11:13:11: 10000000 INFO @ Tue, 16 Jun 2020 11:13:15: 5000000 INFO @ Tue, 16 Jun 2020 11:13:15: 7000000 INFO @ Tue, 16 Jun 2020 11:13:22: 11000000 INFO @ Tue, 16 Jun 2020 11:13:25: 6000000 INFO @ Tue, 16 Jun 2020 11:13:26: 8000000 INFO @ Tue, 16 Jun 2020 11:13:34: 7000000 INFO @ Tue, 16 Jun 2020 11:13:35: 12000000 INFO @ Tue, 16 Jun 2020 11:13:37: 9000000 INFO @ Tue, 16 Jun 2020 11:13:43: 8000000 INFO @ Tue, 16 Jun 2020 11:13:47: 13000000 INFO @ Tue, 16 Jun 2020 11:13:48: 10000000 INFO @ Tue, 16 Jun 2020 11:13:53: 9000000 INFO @ Tue, 16 Jun 2020 11:13:58: 11000000 INFO @ Tue, 16 Jun 2020 11:13:58: 14000000 INFO @ Tue, 16 Jun 2020 11:14:02: 10000000 INFO @ Tue, 16 Jun 2020 11:14:08: 12000000 INFO @ Tue, 16 Jun 2020 11:14:09: 15000000 INFO @ Tue, 16 Jun 2020 11:14:11: 11000000 INFO @ Tue, 16 Jun 2020 11:14:19: 13000000 INFO @ Tue, 16 Jun 2020 11:14:20: 16000000 INFO @ Tue, 16 Jun 2020 11:14:21: 12000000 INFO @ Tue, 16 Jun 2020 11:14:29: 14000000 INFO @ Tue, 16 Jun 2020 11:14:30: 13000000 INFO @ Tue, 16 Jun 2020 11:14:31: 17000000 INFO @ Tue, 16 Jun 2020 11:14:40: 14000000 INFO @ Tue, 16 Jun 2020 11:14:40: 15000000 INFO @ Tue, 16 Jun 2020 11:14:42: 18000000 INFO @ Tue, 16 Jun 2020 11:14:49: 15000000 INFO @ Tue, 16 Jun 2020 11:14:51: 16000000 INFO @ Tue, 16 Jun 2020 11:14:53: 19000000 INFO @ Tue, 16 Jun 2020 11:14:59: 16000000 INFO @ Tue, 16 Jun 2020 11:15:02: 17000000 INFO @ Tue, 16 Jun 2020 11:15:04: 20000000 INFO @ Tue, 16 Jun 2020 11:15:08: 17000000 INFO @ Tue, 16 Jun 2020 11:15:12: 18000000 INFO @ Tue, 16 Jun 2020 11:15:15: 21000000 INFO @ Tue, 16 Jun 2020 11:15:18: 18000000 INFO @ Tue, 16 Jun 2020 11:15:23: 19000000 INFO @ Tue, 16 Jun 2020 11:15:26: 22000000 INFO @ Tue, 16 Jun 2020 11:15:27: 19000000 INFO @ Tue, 16 Jun 2020 11:15:33: 20000000 INFO @ Tue, 16 Jun 2020 11:15:36: 23000000 INFO @ Tue, 16 Jun 2020 11:15:36: 20000000 INFO @ Tue, 16 Jun 2020 11:15:44: 21000000 INFO @ Tue, 16 Jun 2020 11:15:46: 21000000 INFO @ Tue, 16 Jun 2020 11:15:47: 24000000 INFO @ Tue, 16 Jun 2020 11:15:56: 22000000 INFO @ Tue, 16 Jun 2020 11:15:57: 22000000 INFO @ Tue, 16 Jun 2020 11:15:58: 25000000 INFO @ Tue, 16 Jun 2020 11:16:07: 23000000 INFO @ Tue, 16 Jun 2020 11:16:08: 23000000 INFO @ Tue, 16 Jun 2020 11:16:09: 26000000 INFO @ Tue, 16 Jun 2020 11:16:19: 24000000 INFO @ Tue, 16 Jun 2020 11:16:19: 27000000 INFO @ Tue, 16 Jun 2020 11:16:19: 24000000 INFO @ Tue, 16 Jun 2020 11:16:30: 28000000 INFO @ Tue, 16 Jun 2020 11:16:30: 25000000 INFO @ Tue, 16 Jun 2020 11:16:31: 25000000 INFO @ Tue, 16 Jun 2020 11:16:41: 29000000 INFO @ Tue, 16 Jun 2020 11:16:41: 26000000 INFO @ Tue, 16 Jun 2020 11:16:42: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:16:52: 30000000 INFO @ Tue, 16 Jun 2020 11:16:52: 27000000 INFO @ Tue, 16 Jun 2020 11:16:53: 27000000 INFO @ Tue, 16 Jun 2020 11:17:03: 31000000 INFO @ Tue, 16 Jun 2020 11:17:04: 28000000 INFO @ Tue, 16 Jun 2020 11:17:05: 28000000 INFO @ Tue, 16 Jun 2020 11:17:15: 32000000 INFO @ Tue, 16 Jun 2020 11:17:15: 29000000 INFO @ Tue, 16 Jun 2020 11:17:16: 29000000 INFO @ Tue, 16 Jun 2020 11:17:26: 33000000 INFO @ Tue, 16 Jun 2020 11:17:27: 30000000 INFO @ Tue, 16 Jun 2020 11:17:27: 30000000 INFO @ Tue, 16 Jun 2020 11:17:37: 31000000 INFO @ Tue, 16 Jun 2020 11:17:38: 34000000 INFO @ Tue, 16 Jun 2020 11:17:38: 31000000 INFO @ Tue, 16 Jun 2020 11:17:48: 32000000 INFO @ Tue, 16 Jun 2020 11:17:49: 32000000 INFO @ Tue, 16 Jun 2020 11:17:49: 35000000 INFO @ Tue, 16 Jun 2020 11:17:59: 33000000 INFO @ Tue, 16 Jun 2020 11:18:00: 33000000 INFO @ Tue, 16 Jun 2020 11:18:00: 36000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:18:11: 34000000 INFO @ Tue, 16 Jun 2020 11:18:11: 34000000 INFO @ Tue, 16 Jun 2020 11:18:11: 37000000 INFO @ Tue, 16 Jun 2020 11:18:22: 35000000 INFO @ Tue, 16 Jun 2020 11:18:22: 35000000 INFO @ Tue, 16 Jun 2020 11:18:22: 38000000 INFO @ Tue, 16 Jun 2020 11:18:33: 36000000 INFO @ Tue, 16 Jun 2020 11:18:33: 36000000 INFO @ Tue, 16 Jun 2020 11:18:34: 39000000 INFO @ Tue, 16 Jun 2020 11:18:44: 37000000 INFO @ Tue, 16 Jun 2020 11:18:45: 40000000 INFO @ Tue, 16 Jun 2020 11:18:45: 37000000 INFO @ Tue, 16 Jun 2020 11:18:56: 41000000 INFO @ Tue, 16 Jun 2020 11:18:56: 38000000 INFO @ Tue, 16 Jun 2020 11:18:56: 38000000 INFO @ Tue, 16 Jun 2020 11:19:06: 42000000 INFO @ Tue, 16 Jun 2020 11:19:08: 39000000 INFO @ Tue, 16 Jun 2020 11:19:09: 39000000 INFO @ Tue, 16 Jun 2020 11:19:17: 43000000 INFO @ Tue, 16 Jun 2020 11:19:20: 40000000 INFO @ Tue, 16 Jun 2020 11:19:20: 40000000 INFO @ Tue, 16 Jun 2020 11:19:27: 44000000 INFO @ Tue, 16 Jun 2020 11:19:31: 41000000 INFO @ Tue, 16 Jun 2020 11:19:32: 41000000 INFO @ Tue, 16 Jun 2020 11:19:38: 45000000 INFO @ Tue, 16 Jun 2020 11:19:42: 42000000 INFO @ Tue, 16 Jun 2020 11:19:43: 42000000 INFO @ Tue, 16 Jun 2020 11:19:49: 46000000 INFO @ Tue, 16 Jun 2020 11:19:53: 43000000 INFO @ Tue, 16 Jun 2020 11:19:54: 43000000 INFO @ Tue, 16 Jun 2020 11:19:59: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:19:59: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:19:59: #1 total tags in treatment: 17509869 INFO @ Tue, 16 Jun 2020 11:19:59: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:19:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:19:59: #1 tags after filtering in treatment: 15103861 INFO @ Tue, 16 Jun 2020 11:19:59: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:19:59: #1 finished! INFO @ Tue, 16 Jun 2020 11:19:59: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:19:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:20:00: #2 number of paired peaks: 241 WARNING @ Tue, 16 Jun 2020 11:20:00: Fewer paired peaks (241) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 241 pairs to build model! INFO @ Tue, 16 Jun 2020 11:20:00: start model_add_line... INFO @ Tue, 16 Jun 2020 11:20:00: start X-correlation... INFO @ Tue, 16 Jun 2020 11:20:00: end of X-cor INFO @ Tue, 16 Jun 2020 11:20:00: #2 finished! INFO @ Tue, 16 Jun 2020 11:20:00: #2 predicted fragment length is 200 bps INFO @ Tue, 16 Jun 2020 11:20:00: #2 alternative fragment length(s) may be 4,200 bps INFO @ Tue, 16 Jun 2020 11:20:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.05_model.r WARNING @ Tue, 16 Jun 2020 11:20:00: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:20:00: #2 You may need to consider one of the other alternative d(s): 4,200 WARNING @ Tue, 16 Jun 2020 11:20:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:20:00: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:20:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:20:04: 44000000 INFO @ Tue, 16 Jun 2020 11:20:05: 44000000 INFO @ Tue, 16 Jun 2020 11:20:15: 45000000 INFO @ Tue, 16 Jun 2020 11:20:15: 45000000 INFO @ Tue, 16 Jun 2020 11:20:25: 46000000 INFO @ Tue, 16 Jun 2020 11:20:26: 46000000 INFO @ Tue, 16 Jun 2020 11:20:29: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:20:36: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:20:36: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:20:36: #1 total tags in treatment: 17509869 INFO @ Tue, 16 Jun 2020 11:20:36: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:20:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:20:36: #1 tags after filtering in treatment: 15103861 INFO @ Tue, 16 Jun 2020 11:20:36: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:20:36: #1 finished! INFO @ Tue, 16 Jun 2020 11:20:36: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:20:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:20:36: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:20:36: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:20:36: #1 total tags in treatment: 17509869 INFO @ Tue, 16 Jun 2020 11:20:36: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:20:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:20:36: #1 tags after filtering in treatment: 15103861 INFO @ Tue, 16 Jun 2020 11:20:36: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:20:36: #1 finished! INFO @ Tue, 16 Jun 2020 11:20:36: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:20:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:20:37: #2 number of paired peaks: 241 WARNING @ Tue, 16 Jun 2020 11:20:37: Fewer paired peaks (241) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 241 pairs to build model! INFO @ Tue, 16 Jun 2020 11:20:37: start model_add_line... INFO @ Tue, 16 Jun 2020 11:20:37: start X-correlation... INFO @ Tue, 16 Jun 2020 11:20:37: end of X-cor INFO @ Tue, 16 Jun 2020 11:20:37: #2 finished! INFO @ Tue, 16 Jun 2020 11:20:37: #2 predicted fragment length is 200 bps INFO @ Tue, 16 Jun 2020 11:20:37: #2 alternative fragment length(s) may be 4,200 bps INFO @ Tue, 16 Jun 2020 11:20:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.10_model.r WARNING @ Tue, 16 Jun 2020 11:20:37: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:20:37: #2 You may need to consider one of the other alternative d(s): 4,200 WARNING @ Tue, 16 Jun 2020 11:20:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:20:37: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:20:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:20:38: #2 number of paired peaks: 241 WARNING @ Tue, 16 Jun 2020 11:20:38: Fewer paired peaks (241) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 241 pairs to build model! INFO @ Tue, 16 Jun 2020 11:20:38: start model_add_line... INFO @ Tue, 16 Jun 2020 11:20:38: start X-correlation... INFO @ Tue, 16 Jun 2020 11:20:38: end of X-cor INFO @ Tue, 16 Jun 2020 11:20:38: #2 finished! INFO @ Tue, 16 Jun 2020 11:20:38: #2 predicted fragment length is 200 bps INFO @ Tue, 16 Jun 2020 11:20:38: #2 alternative fragment length(s) may be 4,200 bps INFO @ Tue, 16 Jun 2020 11:20:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.20_model.r WARNING @ Tue, 16 Jun 2020 11:20:38: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:20:38: #2 You may need to consider one of the other alternative d(s): 4,200 WARNING @ Tue, 16 Jun 2020 11:20:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:20:38: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:20:38: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:20:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:20:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:20:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.05_summits.bed INFO @ Tue, 16 Jun 2020 11:20:43: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (437 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:21:07: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:21:08: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:21:21: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:21:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:21:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.10_summits.bed INFO @ Tue, 16 Jun 2020 11:21:21: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (331 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:21:22: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:21:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:21:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619568/SRX6619568.20_summits.bed INFO @ Tue, 16 Jun 2020 11:21:22: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (224 records, 4 fields): 1 millis CompletedMACS2peakCalling