Job ID = 6368868 SRX = SRX6619566 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:36:16 prefetch.2.10.7: 1) Downloading 'SRR9866043'... 2020-06-16T00:36:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:52:32 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:52:32 prefetch.2.10.7: 1) 'SRR9866043' was downloaded successfully 2020-06-16T00:52:32 prefetch.2.10.7: 'SRR9866043' has 0 unresolved dependencies Read 28963952 spots for SRR9866043/SRR9866043.sra Written 28963952 spots for SRR9866043/SRR9866043.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:57:04 28963952 reads; of these: 28963952 (100.00%) were paired; of these: 13482897 (46.55%) aligned concordantly 0 times 13036250 (45.01%) aligned concordantly exactly 1 time 2444805 (8.44%) aligned concordantly >1 times ---- 13482897 pairs aligned concordantly 0 times; of these: 8412341 (62.39%) aligned discordantly 1 time ---- 5070556 pairs aligned 0 times concordantly or discordantly; of these: 10141112 mates make up the pairs; of these: 7187714 (70.88%) aligned 0 times 1409177 (13.90%) aligned exactly 1 time 1544221 (15.23%) aligned >1 times 87.59% overall alignment rate Time searching: 00:57:04 Overall time: 00:57:04 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2776239 / 23141149 = 0.1200 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:17:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:17:32: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:17:32: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:17:40: 1000000 INFO @ Tue, 16 Jun 2020 11:17:49: 2000000 INFO @ Tue, 16 Jun 2020 11:17:57: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:02: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:02: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:18:05: 4000000 INFO @ Tue, 16 Jun 2020 11:18:12: 1000000 INFO @ Tue, 16 Jun 2020 11:18:15: 5000000 INFO @ Tue, 16 Jun 2020 11:18:22: 2000000 INFO @ Tue, 16 Jun 2020 11:18:24: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:18:31: 3000000 INFO @ Tue, 16 Jun 2020 11:18:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:18:32: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:18:32: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:18:34: 7000000 INFO @ Tue, 16 Jun 2020 11:18:41: 4000000 INFO @ Tue, 16 Jun 2020 11:18:42: 1000000 INFO @ Tue, 16 Jun 2020 11:18:43: 8000000 INFO @ Tue, 16 Jun 2020 11:18:50: 5000000 INFO @ Tue, 16 Jun 2020 11:18:52: 2000000 INFO @ Tue, 16 Jun 2020 11:18:53: 9000000 INFO @ Tue, 16 Jun 2020 11:19:00: 6000000 INFO @ Tue, 16 Jun 2020 11:19:01: 3000000 INFO @ Tue, 16 Jun 2020 11:19:02: 10000000 INFO @ Tue, 16 Jun 2020 11:19:09: 7000000 INFO @ Tue, 16 Jun 2020 11:19:11: 4000000 INFO @ Tue, 16 Jun 2020 11:19:12: 11000000 INFO @ Tue, 16 Jun 2020 11:19:19: 8000000 INFO @ Tue, 16 Jun 2020 11:19:20: 5000000 INFO @ Tue, 16 Jun 2020 11:19:21: 12000000 INFO @ Tue, 16 Jun 2020 11:19:28: 9000000 INFO @ Tue, 16 Jun 2020 11:19:30: 6000000 INFO @ Tue, 16 Jun 2020 11:19:31: 13000000 INFO @ Tue, 16 Jun 2020 11:19:37: 10000000 INFO @ Tue, 16 Jun 2020 11:19:39: 7000000 INFO @ Tue, 16 Jun 2020 11:19:40: 14000000 INFO @ Tue, 16 Jun 2020 11:19:47: 11000000 INFO @ Tue, 16 Jun 2020 11:19:49: 8000000 INFO @ Tue, 16 Jun 2020 11:19:50: 15000000 INFO @ Tue, 16 Jun 2020 11:19:56: 12000000 INFO @ Tue, 16 Jun 2020 11:19:58: 9000000 INFO @ Tue, 16 Jun 2020 11:19:59: 16000000 INFO @ Tue, 16 Jun 2020 11:20:05: 13000000 INFO @ Tue, 16 Jun 2020 11:20:07: 10000000 INFO @ Tue, 16 Jun 2020 11:20:08: 17000000 INFO @ Tue, 16 Jun 2020 11:20:15: 14000000 INFO @ Tue, 16 Jun 2020 11:20:16: 11000000 INFO @ Tue, 16 Jun 2020 11:20:17: 18000000 INFO @ Tue, 16 Jun 2020 11:20:24: 15000000 INFO @ Tue, 16 Jun 2020 11:20:25: 12000000 INFO @ Tue, 16 Jun 2020 11:20:27: 19000000 INFO @ Tue, 16 Jun 2020 11:20:33: 16000000 INFO @ Tue, 16 Jun 2020 11:20:34: 13000000 INFO @ Tue, 16 Jun 2020 11:20:36: 20000000 INFO @ Tue, 16 Jun 2020 11:20:42: 17000000 INFO @ Tue, 16 Jun 2020 11:20:44: 14000000 INFO @ Tue, 16 Jun 2020 11:20:45: 21000000 INFO @ Tue, 16 Jun 2020 11:20:50: 18000000 INFO @ Tue, 16 Jun 2020 11:20:53: 15000000 INFO @ Tue, 16 Jun 2020 11:20:54: 22000000 INFO @ Tue, 16 Jun 2020 11:20:59: 19000000 INFO @ Tue, 16 Jun 2020 11:21:02: 16000000 INFO @ Tue, 16 Jun 2020 11:21:02: 23000000 INFO @ Tue, 16 Jun 2020 11:21:08: 20000000 INFO @ Tue, 16 Jun 2020 11:21:10: 17000000 INFO @ Tue, 16 Jun 2020 11:21:11: 24000000 INFO @ Tue, 16 Jun 2020 11:21:17: 21000000 INFO @ Tue, 16 Jun 2020 11:21:19: 18000000 INFO @ Tue, 16 Jun 2020 11:21:20: 25000000 INFO @ Tue, 16 Jun 2020 11:21:26: 22000000 INFO @ Tue, 16 Jun 2020 11:21:28: 19000000 INFO @ Tue, 16 Jun 2020 11:21:29: 26000000 INFO @ Tue, 16 Jun 2020 11:21:34: 23000000 INFO @ Tue, 16 Jun 2020 11:21:37: 20000000 INFO @ Tue, 16 Jun 2020 11:21:37: 27000000 INFO @ Tue, 16 Jun 2020 11:21:43: 24000000 INFO @ Tue, 16 Jun 2020 11:21:46: 21000000 INFO @ Tue, 16 Jun 2020 11:21:46: 28000000 INFO @ Tue, 16 Jun 2020 11:21:52: 25000000 INFO @ Tue, 16 Jun 2020 11:21:55: 22000000 INFO @ Tue, 16 Jun 2020 11:21:55: 29000000 INFO @ Tue, 16 Jun 2020 11:22:01: 26000000 INFO @ Tue, 16 Jun 2020 11:22:04: 23000000 INFO @ Tue, 16 Jun 2020 11:22:04: 30000000 INFO @ Tue, 16 Jun 2020 11:22:09: 27000000 INFO @ Tue, 16 Jun 2020 11:22:12: 24000000 INFO @ Tue, 16 Jun 2020 11:22:13: 31000000 INFO @ Tue, 16 Jun 2020 11:22:18: 28000000 INFO @ Tue, 16 Jun 2020 11:22:21: 25000000 INFO @ Tue, 16 Jun 2020 11:22:21: 32000000 INFO @ Tue, 16 Jun 2020 11:22:27: 29000000 INFO @ Tue, 16 Jun 2020 11:22:30: 26000000 INFO @ Tue, 16 Jun 2020 11:22:30: 33000000 INFO @ Tue, 16 Jun 2020 11:22:35: 30000000 INFO @ Tue, 16 Jun 2020 11:22:38: 27000000 INFO @ Tue, 16 Jun 2020 11:22:39: 34000000 INFO @ Tue, 16 Jun 2020 11:22:44: 31000000 INFO @ Tue, 16 Jun 2020 11:22:47: 28000000 INFO @ Tue, 16 Jun 2020 11:22:48: 35000000 INFO @ Tue, 16 Jun 2020 11:22:53: 32000000 INFO @ Tue, 16 Jun 2020 11:22:56: 29000000 INFO @ Tue, 16 Jun 2020 11:22:56: 36000000 INFO @ Tue, 16 Jun 2020 11:23:01: 33000000 INFO @ Tue, 16 Jun 2020 11:23:05: 30000000 INFO @ Tue, 16 Jun 2020 11:23:05: 37000000 INFO @ Tue, 16 Jun 2020 11:23:10: 34000000 INFO @ Tue, 16 Jun 2020 11:23:13: 31000000 INFO @ Tue, 16 Jun 2020 11:23:14: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:23:19: 35000000 INFO @ Tue, 16 Jun 2020 11:23:22: 32000000 INFO @ Tue, 16 Jun 2020 11:23:23: 39000000 INFO @ Tue, 16 Jun 2020 11:23:28: 36000000 INFO @ Tue, 16 Jun 2020 11:23:31: 33000000 INFO @ Tue, 16 Jun 2020 11:23:32: 40000000 INFO @ Tue, 16 Jun 2020 11:23:37: 37000000 INFO @ Tue, 16 Jun 2020 11:23:40: 34000000 INFO @ Tue, 16 Jun 2020 11:23:41: 41000000 INFO @ Tue, 16 Jun 2020 11:23:46: 38000000 INFO @ Tue, 16 Jun 2020 11:23:49: 35000000 INFO @ Tue, 16 Jun 2020 11:23:50: 42000000 INFO @ Tue, 16 Jun 2020 11:23:55: 39000000 INFO @ Tue, 16 Jun 2020 11:23:58: 36000000 INFO @ Tue, 16 Jun 2020 11:23:59: 43000000 INFO @ Tue, 16 Jun 2020 11:24:03: 40000000 INFO @ Tue, 16 Jun 2020 11:24:07: 37000000 INFO @ Tue, 16 Jun 2020 11:24:08: 44000000 INFO @ Tue, 16 Jun 2020 11:24:12: 41000000 INFO @ Tue, 16 Jun 2020 11:24:16: 38000000 INFO @ Tue, 16 Jun 2020 11:24:17: 45000000 INFO @ Tue, 16 Jun 2020 11:24:18: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:24:18: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:24:18: #1 total tags in treatment: 13568515 INFO @ Tue, 16 Jun 2020 11:24:18: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:24:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:24:19: #1 tags after filtering in treatment: 11682941 INFO @ Tue, 16 Jun 2020 11:24:19: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:24:19: #1 finished! INFO @ Tue, 16 Jun 2020 11:24:19: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:24:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:24:19: #2 number of paired peaks: 270 WARNING @ Tue, 16 Jun 2020 11:24:19: Fewer paired peaks (270) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 270 pairs to build model! INFO @ Tue, 16 Jun 2020 11:24:19: start model_add_line... INFO @ Tue, 16 Jun 2020 11:24:20: start X-correlation... INFO @ Tue, 16 Jun 2020 11:24:20: end of X-cor INFO @ Tue, 16 Jun 2020 11:24:20: #2 finished! INFO @ Tue, 16 Jun 2020 11:24:20: #2 predicted fragment length is 209 bps INFO @ Tue, 16 Jun 2020 11:24:20: #2 alternative fragment length(s) may be 209 bps INFO @ Tue, 16 Jun 2020 11:24:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.05_model.r WARNING @ Tue, 16 Jun 2020 11:24:20: #2 Since the d (209) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:24:20: #2 You may need to consider one of the other alternative d(s): 209 WARNING @ Tue, 16 Jun 2020 11:24:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:24:20: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:24:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:24:21: 42000000 INFO @ Tue, 16 Jun 2020 11:24:25: 39000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:24:30: 43000000 INFO @ Tue, 16 Jun 2020 11:24:33: 40000000 INFO @ Tue, 16 Jun 2020 11:24:38: 44000000 INFO @ Tue, 16 Jun 2020 11:24:42: 41000000 INFO @ Tue, 16 Jun 2020 11:24:43: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:24:47: 45000000 INFO @ Tue, 16 Jun 2020 11:24:49: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:24:49: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:24:49: #1 total tags in treatment: 13568515 INFO @ Tue, 16 Jun 2020 11:24:49: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:24:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:24:49: #1 tags after filtering in treatment: 11682941 INFO @ Tue, 16 Jun 2020 11:24:49: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:24:49: #1 finished! INFO @ Tue, 16 Jun 2020 11:24:49: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:24:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:24:50: #2 number of paired peaks: 270 WARNING @ Tue, 16 Jun 2020 11:24:50: Fewer paired peaks (270) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 270 pairs to build model! INFO @ Tue, 16 Jun 2020 11:24:50: start model_add_line... INFO @ Tue, 16 Jun 2020 11:24:50: start X-correlation... INFO @ Tue, 16 Jun 2020 11:24:50: end of X-cor INFO @ Tue, 16 Jun 2020 11:24:50: #2 finished! INFO @ Tue, 16 Jun 2020 11:24:50: #2 predicted fragment length is 209 bps INFO @ Tue, 16 Jun 2020 11:24:50: #2 alternative fragment length(s) may be 209 bps INFO @ Tue, 16 Jun 2020 11:24:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.10_model.r WARNING @ Tue, 16 Jun 2020 11:24:50: #2 Since the d (209) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:24:50: #2 You may need to consider one of the other alternative d(s): 209 WARNING @ Tue, 16 Jun 2020 11:24:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:24:50: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:24:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:24:50: 42000000 INFO @ Tue, 16 Jun 2020 11:24:55: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:24:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:24:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.05_summits.bed INFO @ Tue, 16 Jun 2020 11:24:55: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (416 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:24:59: 43000000 INFO @ Tue, 16 Jun 2020 11:25:07: 44000000 INFO @ Tue, 16 Jun 2020 11:25:13: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:25:15: 45000000 INFO @ Tue, 16 Jun 2020 11:25:16: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:25:16: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:25:16: #1 total tags in treatment: 13568515 INFO @ Tue, 16 Jun 2020 11:25:16: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:25:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:25:17: #1 tags after filtering in treatment: 11682941 INFO @ Tue, 16 Jun 2020 11:25:17: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:25:17: #1 finished! INFO @ Tue, 16 Jun 2020 11:25:17: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:25:17: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:25:17: #2 number of paired peaks: 270 WARNING @ Tue, 16 Jun 2020 11:25:17: Fewer paired peaks (270) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 270 pairs to build model! INFO @ Tue, 16 Jun 2020 11:25:17: start model_add_line... INFO @ Tue, 16 Jun 2020 11:25:17: start X-correlation... INFO @ Tue, 16 Jun 2020 11:25:18: end of X-cor INFO @ Tue, 16 Jun 2020 11:25:18: #2 finished! INFO @ Tue, 16 Jun 2020 11:25:18: #2 predicted fragment length is 209 bps INFO @ Tue, 16 Jun 2020 11:25:18: #2 alternative fragment length(s) may be 209 bps INFO @ Tue, 16 Jun 2020 11:25:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.20_model.r WARNING @ Tue, 16 Jun 2020 11:25:18: #2 Since the d (209) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:25:18: #2 You may need to consider one of the other alternative d(s): 209 WARNING @ Tue, 16 Jun 2020 11:25:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:25:18: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:25:18: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:25:25: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:25:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:25:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.10_summits.bed INFO @ Tue, 16 Jun 2020 11:25:25: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (303 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:25:41: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:25:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:25:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:25:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619566/SRX6619566.20_summits.bed INFO @ Tue, 16 Jun 2020 11:25:53: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (203 records, 4 fields): 1 millis CompletedMACS2peakCalling