Job ID = 6368864 SRX = SRX6619562 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:39:19 prefetch.2.10.7: 1) Downloading 'SRR9866047'... 2020-06-16T00:39:19 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:53:04 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:53:04 prefetch.2.10.7: 1) 'SRR9866047' was downloaded successfully 2020-06-16T00:53:04 prefetch.2.10.7: 'SRR9866047' has 0 unresolved dependencies Read 30544413 spots for SRR9866047/SRR9866047.sra Written 30544413 spots for SRR9866047/SRR9866047.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:58:51 30544413 reads; of these: 30544413 (100.00%) were paired; of these: 15318356 (50.15%) aligned concordantly 0 times 12829925 (42.00%) aligned concordantly exactly 1 time 2396132 (7.84%) aligned concordantly >1 times ---- 15318356 pairs aligned concordantly 0 times; of these: 6900852 (45.05%) aligned discordantly 1 time ---- 8417504 pairs aligned 0 times concordantly or discordantly; of these: 16835008 mates make up the pairs; of these: 14166240 (84.15%) aligned 0 times 1249534 (7.42%) aligned exactly 1 time 1419234 (8.43%) aligned >1 times 76.81% overall alignment rate Time searching: 00:58:51 Overall time: 00:58:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2512327 / 21284548 = 0.1180 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:20:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:20:40: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:20:40: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:20:50: 1000000 INFO @ Tue, 16 Jun 2020 11:20:59: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:21:09: 3000000 INFO @ Tue, 16 Jun 2020 11:21:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:21:09: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:21:09: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:20: 4000000 INFO @ Tue, 16 Jun 2020 11:21:20: 1000000 INFO @ Tue, 16 Jun 2020 11:21:30: 5000000 INFO @ Tue, 16 Jun 2020 11:21:31: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:21:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:21:39: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:21:39: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:21:41: 6000000 INFO @ Tue, 16 Jun 2020 11:21:41: 3000000 INFO @ Tue, 16 Jun 2020 11:21:50: 1000000 INFO @ Tue, 16 Jun 2020 11:21:52: 7000000 INFO @ Tue, 16 Jun 2020 11:21:52: 4000000 INFO @ Tue, 16 Jun 2020 11:22:01: 2000000 INFO @ Tue, 16 Jun 2020 11:22:02: 8000000 INFO @ Tue, 16 Jun 2020 11:22:03: 5000000 INFO @ Tue, 16 Jun 2020 11:22:12: 3000000 INFO @ Tue, 16 Jun 2020 11:22:13: 9000000 INFO @ Tue, 16 Jun 2020 11:22:14: 6000000 INFO @ Tue, 16 Jun 2020 11:22:23: 10000000 INFO @ Tue, 16 Jun 2020 11:22:23: 4000000 INFO @ Tue, 16 Jun 2020 11:22:24: 7000000 INFO @ Tue, 16 Jun 2020 11:22:34: 11000000 INFO @ Tue, 16 Jun 2020 11:22:34: 5000000 INFO @ Tue, 16 Jun 2020 11:22:35: 8000000 INFO @ Tue, 16 Jun 2020 11:22:44: 12000000 INFO @ Tue, 16 Jun 2020 11:22:45: 6000000 INFO @ Tue, 16 Jun 2020 11:22:45: 9000000 INFO @ Tue, 16 Jun 2020 11:22:55: 13000000 INFO @ Tue, 16 Jun 2020 11:22:55: 7000000 INFO @ Tue, 16 Jun 2020 11:22:55: 10000000 INFO @ Tue, 16 Jun 2020 11:23:05: 14000000 INFO @ Tue, 16 Jun 2020 11:23:06: 8000000 INFO @ Tue, 16 Jun 2020 11:23:06: 11000000 INFO @ Tue, 16 Jun 2020 11:23:16: 15000000 INFO @ Tue, 16 Jun 2020 11:23:17: 9000000 INFO @ Tue, 16 Jun 2020 11:23:17: 12000000 INFO @ Tue, 16 Jun 2020 11:23:26: 16000000 INFO @ Tue, 16 Jun 2020 11:23:27: 10000000 INFO @ Tue, 16 Jun 2020 11:23:28: 13000000 INFO @ Tue, 16 Jun 2020 11:23:36: 17000000 INFO @ Tue, 16 Jun 2020 11:23:38: 11000000 INFO @ Tue, 16 Jun 2020 11:23:38: 14000000 INFO @ Tue, 16 Jun 2020 11:23:47: 18000000 INFO @ Tue, 16 Jun 2020 11:23:49: 12000000 INFO @ Tue, 16 Jun 2020 11:23:49: 15000000 INFO @ Tue, 16 Jun 2020 11:23:57: 19000000 INFO @ Tue, 16 Jun 2020 11:23:59: 16000000 INFO @ Tue, 16 Jun 2020 11:23:59: 13000000 INFO @ Tue, 16 Jun 2020 11:24:08: 20000000 INFO @ Tue, 16 Jun 2020 11:24:09: 17000000 INFO @ Tue, 16 Jun 2020 11:24:10: 14000000 INFO @ Tue, 16 Jun 2020 11:24:19: 21000000 INFO @ Tue, 16 Jun 2020 11:24:20: 18000000 INFO @ Tue, 16 Jun 2020 11:24:20: 15000000 INFO @ Tue, 16 Jun 2020 11:24:29: 22000000 INFO @ Tue, 16 Jun 2020 11:24:30: 19000000 INFO @ Tue, 16 Jun 2020 11:24:31: 16000000 INFO @ Tue, 16 Jun 2020 11:24:39: 23000000 INFO @ Tue, 16 Jun 2020 11:24:41: 20000000 INFO @ Tue, 16 Jun 2020 11:24:41: 17000000 INFO @ Tue, 16 Jun 2020 11:24:50: 24000000 INFO @ Tue, 16 Jun 2020 11:24:51: 21000000 INFO @ Tue, 16 Jun 2020 11:24:51: 18000000 INFO @ Tue, 16 Jun 2020 11:25:00: 25000000 INFO @ Tue, 16 Jun 2020 11:25:01: 22000000 INFO @ Tue, 16 Jun 2020 11:25:02: 19000000 INFO @ Tue, 16 Jun 2020 11:25:11: 26000000 INFO @ Tue, 16 Jun 2020 11:25:11: 23000000 INFO @ Tue, 16 Jun 2020 11:25:12: 20000000 INFO @ Tue, 16 Jun 2020 11:25:21: 27000000 INFO @ Tue, 16 Jun 2020 11:25:22: 24000000 INFO @ Tue, 16 Jun 2020 11:25:23: 21000000 INFO @ Tue, 16 Jun 2020 11:25:32: 28000000 INFO @ Tue, 16 Jun 2020 11:25:32: 25000000 INFO @ Tue, 16 Jun 2020 11:25:33: 22000000 INFO @ Tue, 16 Jun 2020 11:25:42: 29000000 INFO @ Tue, 16 Jun 2020 11:25:42: 26000000 INFO @ Tue, 16 Jun 2020 11:25:44: 23000000 INFO @ Tue, 16 Jun 2020 11:25:53: 27000000 INFO @ Tue, 16 Jun 2020 11:25:53: 30000000 INFO @ Tue, 16 Jun 2020 11:25:54: 24000000 INFO @ Tue, 16 Jun 2020 11:26:03: 31000000 INFO @ Tue, 16 Jun 2020 11:26:03: 28000000 INFO @ Tue, 16 Jun 2020 11:26:05: 25000000 INFO @ Tue, 16 Jun 2020 11:26:13: 32000000 INFO @ Tue, 16 Jun 2020 11:26:13: 29000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:26:16: 26000000 INFO @ Tue, 16 Jun 2020 11:26:24: 33000000 INFO @ Tue, 16 Jun 2020 11:26:24: 30000000 INFO @ Tue, 16 Jun 2020 11:26:26: 27000000 INFO @ Tue, 16 Jun 2020 11:26:34: 31000000 INFO @ Tue, 16 Jun 2020 11:26:34: 34000000 INFO @ Tue, 16 Jun 2020 11:26:37: 28000000 INFO @ Tue, 16 Jun 2020 11:26:44: 32000000 INFO @ Tue, 16 Jun 2020 11:26:45: 35000000 INFO @ Tue, 16 Jun 2020 11:26:47: 29000000 INFO @ Tue, 16 Jun 2020 11:26:55: 33000000 INFO @ Tue, 16 Jun 2020 11:26:55: 36000000 INFO @ Tue, 16 Jun 2020 11:26:57: 30000000 INFO @ Tue, 16 Jun 2020 11:27:05: 34000000 INFO @ Tue, 16 Jun 2020 11:27:05: 37000000 INFO @ Tue, 16 Jun 2020 11:27:08: 31000000 INFO @ Tue, 16 Jun 2020 11:27:16: 38000000 INFO @ Tue, 16 Jun 2020 11:27:16: 35000000 INFO @ Tue, 16 Jun 2020 11:27:18: 32000000 INFO @ Tue, 16 Jun 2020 11:27:26: 39000000 INFO @ Tue, 16 Jun 2020 11:27:26: 36000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:27:28: 33000000 INFO @ Tue, 16 Jun 2020 11:27:36: 40000000 INFO @ Tue, 16 Jun 2020 11:27:36: 37000000 INFO @ Tue, 16 Jun 2020 11:27:38: 34000000 INFO @ Tue, 16 Jun 2020 11:27:46: 41000000 INFO @ Tue, 16 Jun 2020 11:27:47: 38000000 INFO @ Tue, 16 Jun 2020 11:27:49: 35000000 INFO @ Tue, 16 Jun 2020 11:27:55: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:27:55: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:27:55: #1 total tags in treatment: 13334583 INFO @ Tue, 16 Jun 2020 11:27:55: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:27:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:27:55: #1 tags after filtering in treatment: 11599602 INFO @ Tue, 16 Jun 2020 11:27:55: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 16 Jun 2020 11:27:55: #1 finished! INFO @ Tue, 16 Jun 2020 11:27:55: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:27:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:27:56: #2 number of paired peaks: 316 WARNING @ Tue, 16 Jun 2020 11:27:56: Fewer paired peaks (316) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 316 pairs to build model! INFO @ Tue, 16 Jun 2020 11:27:56: start model_add_line... INFO @ Tue, 16 Jun 2020 11:27:56: start X-correlation... INFO @ Tue, 16 Jun 2020 11:27:56: end of X-cor INFO @ Tue, 16 Jun 2020 11:27:56: #2 finished! INFO @ Tue, 16 Jun 2020 11:27:56: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:27:56: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:27:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.05_model.r WARNING @ Tue, 16 Jun 2020 11:27:56: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:27:56: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:27:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:27:56: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:27:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:27:57: 39000000 INFO @ Tue, 16 Jun 2020 11:27:59: 36000000 INFO @ Tue, 16 Jun 2020 11:28:06: 40000000 INFO @ Tue, 16 Jun 2020 11:28:09: 37000000 INFO @ Tue, 16 Jun 2020 11:28:16: 41000000 INFO @ Tue, 16 Jun 2020 11:28:19: 38000000 INFO @ Tue, 16 Jun 2020 11:28:22: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:25: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:25: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:25: #1 total tags in treatment: 13334583 INFO @ Tue, 16 Jun 2020 11:28:25: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:25: #1 tags after filtering in treatment: 11599602 INFO @ Tue, 16 Jun 2020 11:28:25: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 16 Jun 2020 11:28:25: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:25: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:25: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:26: #2 number of paired peaks: 316 WARNING @ Tue, 16 Jun 2020 11:28:26: Fewer paired peaks (316) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 316 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:26: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:26: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:26: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:26: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:26: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:28:26: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:28:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.10_model.r WARNING @ Tue, 16 Jun 2020 11:28:26: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:26: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:28:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:26: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:26: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:28:28: 39000000 INFO @ Tue, 16 Jun 2020 11:28:34: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:28:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:28:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.05_summits.bed INFO @ Tue, 16 Jun 2020 11:28:34: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (423 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:28:38: 40000000 INFO @ Tue, 16 Jun 2020 11:28:47: 41000000 INFO @ Tue, 16 Jun 2020 11:28:53: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:28:55: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:28:55: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:28:55: #1 total tags in treatment: 13334583 INFO @ Tue, 16 Jun 2020 11:28:55: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:28:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:28:55: #1 tags after filtering in treatment: 11599602 INFO @ Tue, 16 Jun 2020 11:28:55: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 16 Jun 2020 11:28:55: #1 finished! INFO @ Tue, 16 Jun 2020 11:28:55: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:28:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:28:56: #2 number of paired peaks: 316 WARNING @ Tue, 16 Jun 2020 11:28:56: Fewer paired peaks (316) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 316 pairs to build model! INFO @ Tue, 16 Jun 2020 11:28:56: start model_add_line... INFO @ Tue, 16 Jun 2020 11:28:56: start X-correlation... INFO @ Tue, 16 Jun 2020 11:28:56: end of X-cor INFO @ Tue, 16 Jun 2020 11:28:56: #2 finished! INFO @ Tue, 16 Jun 2020 11:28:56: #2 predicted fragment length is 212 bps INFO @ Tue, 16 Jun 2020 11:28:56: #2 alternative fragment length(s) may be 212 bps INFO @ Tue, 16 Jun 2020 11:28:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.20_model.r WARNING @ Tue, 16 Jun 2020 11:28:56: #2 Since the d (212) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:28:56: #2 You may need to consider one of the other alternative d(s): 212 WARNING @ Tue, 16 Jun 2020 11:28:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:28:56: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:28:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:29:05: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:29:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:29:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.10_summits.bed INFO @ Tue, 16 Jun 2020 11:29:05: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (310 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:29:22: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:29:35: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:29:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:29:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619562/SRX6619562.20_summits.bed INFO @ Tue, 16 Jun 2020 11:29:35: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (206 records, 4 fields): 1 millis CompletedMACS2peakCalling