Job ID = 6368858 SRX = SRX6619556 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:39:04 prefetch.2.10.7: 1) Downloading 'SRR9866053'... 2020-06-16T00:39:04 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:55:45 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:55:45 prefetch.2.10.7: 1) 'SRR9866053' was downloaded successfully 2020-06-16T00:55:45 prefetch.2.10.7: 'SRR9866053' has 0 unresolved dependencies Read 35032287 spots for SRR9866053/SRR9866053.sra Written 35032287 spots for SRR9866053/SRR9866053.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:25:46 35032287 reads; of these: 35032287 (100.00%) were paired; of these: 17925473 (51.17%) aligned concordantly 0 times 12435499 (35.50%) aligned concordantly exactly 1 time 4671315 (13.33%) aligned concordantly >1 times ---- 17925473 pairs aligned concordantly 0 times; of these: 7258892 (40.49%) aligned discordantly 1 time ---- 10666581 pairs aligned 0 times concordantly or discordantly; of these: 21333162 mates make up the pairs; of these: 17597229 (82.49%) aligned 0 times 1242820 (5.83%) aligned exactly 1 time 2493113 (11.69%) aligned >1 times 74.88% overall alignment rate Time searching: 01:25:46 Overall time: 01:25:46 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3984534 / 24016673 = 0.1659 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:51:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:51:44: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:51:44: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:51:54: 1000000 INFO @ Tue, 16 Jun 2020 11:52:03: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:52:13: 3000000 INFO @ Tue, 16 Jun 2020 11:52:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:52:14: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:52:14: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:52:23: 4000000 INFO @ Tue, 16 Jun 2020 11:52:25: 1000000 INFO @ Tue, 16 Jun 2020 11:52:34: 5000000 INFO @ Tue, 16 Jun 2020 11:52:35: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:52:44: 6000000 INFO @ Tue, 16 Jun 2020 11:52:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:52:44: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:52:44: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:52:45: 3000000 INFO @ Tue, 16 Jun 2020 11:52:55: 7000000 INFO @ Tue, 16 Jun 2020 11:52:55: 4000000 INFO @ Tue, 16 Jun 2020 11:52:55: 1000000 INFO @ Tue, 16 Jun 2020 11:53:05: 8000000 INFO @ Tue, 16 Jun 2020 11:53:05: 5000000 INFO @ Tue, 16 Jun 2020 11:53:06: 2000000 INFO @ Tue, 16 Jun 2020 11:53:16: 6000000 INFO @ Tue, 16 Jun 2020 11:53:16: 9000000 INFO @ Tue, 16 Jun 2020 11:53:16: 3000000 INFO @ Tue, 16 Jun 2020 11:53:26: 7000000 INFO @ Tue, 16 Jun 2020 11:53:26: 10000000 INFO @ Tue, 16 Jun 2020 11:53:27: 4000000 INFO @ Tue, 16 Jun 2020 11:53:36: 8000000 INFO @ Tue, 16 Jun 2020 11:53:37: 11000000 INFO @ Tue, 16 Jun 2020 11:53:37: 5000000 INFO @ Tue, 16 Jun 2020 11:53:46: 9000000 INFO @ Tue, 16 Jun 2020 11:53:48: 12000000 INFO @ Tue, 16 Jun 2020 11:53:48: 6000000 INFO @ Tue, 16 Jun 2020 11:53:57: 10000000 INFO @ Tue, 16 Jun 2020 11:53:58: 13000000 INFO @ Tue, 16 Jun 2020 11:53:59: 7000000 INFO @ Tue, 16 Jun 2020 11:54:07: 11000000 INFO @ Tue, 16 Jun 2020 11:54:09: 8000000 INFO @ Tue, 16 Jun 2020 11:54:09: 14000000 INFO @ Tue, 16 Jun 2020 11:54:17: 12000000 INFO @ Tue, 16 Jun 2020 11:54:20: 9000000 INFO @ Tue, 16 Jun 2020 11:54:20: 15000000 INFO @ Tue, 16 Jun 2020 11:54:28: 13000000 INFO @ Tue, 16 Jun 2020 11:54:30: 10000000 INFO @ Tue, 16 Jun 2020 11:54:31: 16000000 INFO @ Tue, 16 Jun 2020 11:54:38: 14000000 INFO @ Tue, 16 Jun 2020 11:54:41: 11000000 INFO @ Tue, 16 Jun 2020 11:54:42: 17000000 INFO @ Tue, 16 Jun 2020 11:54:49: 15000000 INFO @ Tue, 16 Jun 2020 11:54:51: 12000000 INFO @ Tue, 16 Jun 2020 11:54:52: 18000000 INFO @ Tue, 16 Jun 2020 11:54:59: 16000000 INFO @ Tue, 16 Jun 2020 11:55:02: 13000000 INFO @ Tue, 16 Jun 2020 11:55:03: 19000000 INFO @ Tue, 16 Jun 2020 11:55:10: 17000000 INFO @ Tue, 16 Jun 2020 11:55:13: 14000000 INFO @ Tue, 16 Jun 2020 11:55:14: 20000000 INFO @ Tue, 16 Jun 2020 11:55:21: 18000000 INFO @ Tue, 16 Jun 2020 11:55:23: 15000000 INFO @ Tue, 16 Jun 2020 11:55:25: 21000000 INFO @ Tue, 16 Jun 2020 11:55:33: 19000000 INFO @ Tue, 16 Jun 2020 11:55:34: 16000000 INFO @ Tue, 16 Jun 2020 11:55:36: 22000000 INFO @ Tue, 16 Jun 2020 11:55:45: 20000000 INFO @ Tue, 16 Jun 2020 11:55:45: 17000000 INFO @ Tue, 16 Jun 2020 11:55:49: 23000000 INFO @ Tue, 16 Jun 2020 11:55:56: 21000000 INFO @ Tue, 16 Jun 2020 11:55:56: 18000000 INFO @ Tue, 16 Jun 2020 11:56:01: 24000000 INFO @ Tue, 16 Jun 2020 11:56:08: 22000000 INFO @ Tue, 16 Jun 2020 11:56:08: 19000000 INFO @ Tue, 16 Jun 2020 11:56:14: 25000000 INFO @ Tue, 16 Jun 2020 11:56:19: 23000000 INFO @ Tue, 16 Jun 2020 11:56:19: 20000000 INFO @ Tue, 16 Jun 2020 11:56:27: 26000000 INFO @ Tue, 16 Jun 2020 11:56:31: 24000000 INFO @ Tue, 16 Jun 2020 11:56:31: 21000000 INFO @ Tue, 16 Jun 2020 11:56:40: 27000000 INFO @ Tue, 16 Jun 2020 11:56:42: 25000000 INFO @ Tue, 16 Jun 2020 11:56:42: 22000000 INFO @ Tue, 16 Jun 2020 11:56:52: 28000000 INFO @ Tue, 16 Jun 2020 11:56:54: 26000000 INFO @ Tue, 16 Jun 2020 11:56:54: 23000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:57:05: 29000000 INFO @ Tue, 16 Jun 2020 11:57:05: 24000000 INFO @ Tue, 16 Jun 2020 11:57:05: 27000000 INFO @ Tue, 16 Jun 2020 11:57:17: 25000000 INFO @ Tue, 16 Jun 2020 11:57:17: 28000000 INFO @ Tue, 16 Jun 2020 11:57:17: 30000000 INFO @ Tue, 16 Jun 2020 11:57:28: 26000000 INFO @ Tue, 16 Jun 2020 11:57:28: 29000000 INFO @ Tue, 16 Jun 2020 11:57:30: 31000000 INFO @ Tue, 16 Jun 2020 11:57:39: 30000000 INFO @ Tue, 16 Jun 2020 11:57:40: 27000000 INFO @ Tue, 16 Jun 2020 11:57:42: 32000000 INFO @ Tue, 16 Jun 2020 11:57:51: 31000000 INFO @ Tue, 16 Jun 2020 11:57:51: 28000000 INFO @ Tue, 16 Jun 2020 11:57:54: 33000000 INFO @ Tue, 16 Jun 2020 11:58:02: 32000000 INFO @ Tue, 16 Jun 2020 11:58:02: 29000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:58:06: 34000000 INFO @ Tue, 16 Jun 2020 11:58:13: 33000000 INFO @ Tue, 16 Jun 2020 11:58:13: 30000000 INFO @ Tue, 16 Jun 2020 11:58:18: 35000000 INFO @ Tue, 16 Jun 2020 11:58:24: 34000000 INFO @ Tue, 16 Jun 2020 11:58:24: 31000000 INFO @ Tue, 16 Jun 2020 11:58:31: 36000000 INFO @ Tue, 16 Jun 2020 11:58:35: 35000000 INFO @ Tue, 16 Jun 2020 11:58:36: 32000000 INFO @ Tue, 16 Jun 2020 11:58:43: 37000000 INFO @ Tue, 16 Jun 2020 11:58:47: 36000000 INFO @ Tue, 16 Jun 2020 11:58:47: 33000000 INFO @ Tue, 16 Jun 2020 11:58:55: 38000000 INFO @ Tue, 16 Jun 2020 11:58:57: 34000000 INFO @ Tue, 16 Jun 2020 11:58:58: 37000000 INFO @ Tue, 16 Jun 2020 11:59:07: 39000000 INFO @ Tue, 16 Jun 2020 11:59:08: 35000000 INFO @ Tue, 16 Jun 2020 11:59:09: 38000000 INFO @ Tue, 16 Jun 2020 11:59:18: 40000000 INFO @ Tue, 16 Jun 2020 11:59:19: 36000000 INFO @ Tue, 16 Jun 2020 11:59:19: 39000000 INFO @ Tue, 16 Jun 2020 11:59:29: 41000000 INFO @ Tue, 16 Jun 2020 11:59:30: 37000000 INFO @ Tue, 16 Jun 2020 11:59:30: 40000000 INFO @ Tue, 16 Jun 2020 11:59:39: 42000000 INFO @ Tue, 16 Jun 2020 11:59:40: 38000000 INFO @ Tue, 16 Jun 2020 11:59:41: 41000000 INFO @ Tue, 16 Jun 2020 11:59:50: 43000000 INFO @ Tue, 16 Jun 2020 11:59:51: 39000000 INFO @ Tue, 16 Jun 2020 11:59:52: 42000000 INFO @ Tue, 16 Jun 2020 12:00:01: 44000000 INFO @ Tue, 16 Jun 2020 12:00:02: 40000000 INFO @ Tue, 16 Jun 2020 12:00:02: 43000000 INFO @ Tue, 16 Jun 2020 12:00:07: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:00:07: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:00:07: #1 total tags in treatment: 13965608 INFO @ Tue, 16 Jun 2020 12:00:07: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:00:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:00:07: #1 tags after filtering in treatment: 10609249 INFO @ Tue, 16 Jun 2020 12:00:07: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 12:00:07: #1 finished! INFO @ Tue, 16 Jun 2020 12:00:07: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:00:07: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:00:08: #2 number of paired peaks: 499 WARNING @ Tue, 16 Jun 2020 12:00:08: Fewer paired peaks (499) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 499 pairs to build model! INFO @ Tue, 16 Jun 2020 12:00:08: start model_add_line... INFO @ Tue, 16 Jun 2020 12:00:08: start X-correlation... INFO @ Tue, 16 Jun 2020 12:00:08: end of X-cor INFO @ Tue, 16 Jun 2020 12:00:08: #2 finished! INFO @ Tue, 16 Jun 2020 12:00:08: #2 predicted fragment length is 217 bps INFO @ Tue, 16 Jun 2020 12:00:08: #2 alternative fragment length(s) may be 217 bps INFO @ Tue, 16 Jun 2020 12:00:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.05_model.r WARNING @ Tue, 16 Jun 2020 12:00:08: #2 Since the d (217) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:00:08: #2 You may need to consider one of the other alternative d(s): 217 WARNING @ Tue, 16 Jun 2020 12:00:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:00:08: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:00:08: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:00:13: 41000000 INFO @ Tue, 16 Jun 2020 12:00:13: 44000000 INFO @ Tue, 16 Jun 2020 12:00:18: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:00:18: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:00:18: #1 total tags in treatment: 13965608 INFO @ Tue, 16 Jun 2020 12:00:18: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:00:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:00:19: #1 tags after filtering in treatment: 10609249 INFO @ Tue, 16 Jun 2020 12:00:19: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 12:00:19: #1 finished! INFO @ Tue, 16 Jun 2020 12:00:19: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:00:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:00:20: #2 number of paired peaks: 499 WARNING @ Tue, 16 Jun 2020 12:00:20: Fewer paired peaks (499) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 499 pairs to build model! INFO @ Tue, 16 Jun 2020 12:00:20: start model_add_line... INFO @ Tue, 16 Jun 2020 12:00:20: start X-correlation... INFO @ Tue, 16 Jun 2020 12:00:20: end of X-cor INFO @ Tue, 16 Jun 2020 12:00:20: #2 finished! INFO @ Tue, 16 Jun 2020 12:00:20: #2 predicted fragment length is 217 bps INFO @ Tue, 16 Jun 2020 12:00:20: #2 alternative fragment length(s) may be 217 bps INFO @ Tue, 16 Jun 2020 12:00:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.10_model.r WARNING @ Tue, 16 Jun 2020 12:00:20: #2 Since the d (217) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:00:20: #2 You may need to consider one of the other alternative d(s): 217 WARNING @ Tue, 16 Jun 2020 12:00:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:00:20: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:00:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:00:23: 42000000 INFO @ Tue, 16 Jun 2020 12:00:32: 43000000 INFO @ Tue, 16 Jun 2020 12:00:36: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:00:42: 44000000 INFO @ Tue, 16 Jun 2020 12:00:47: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:00:47: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:00:47: #1 total tags in treatment: 13965608 INFO @ Tue, 16 Jun 2020 12:00:47: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:00:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:00:47: #1 tags after filtering in treatment: 10609249 INFO @ Tue, 16 Jun 2020 12:00:47: #1 Redundant rate of treatment: 0.24 INFO @ Tue, 16 Jun 2020 12:00:47: #1 finished! INFO @ Tue, 16 Jun 2020 12:00:47: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:00:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:00:48: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:00:48: #2 number of paired peaks: 499 WARNING @ Tue, 16 Jun 2020 12:00:48: Fewer paired peaks (499) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 499 pairs to build model! INFO @ Tue, 16 Jun 2020 12:00:48: start model_add_line... INFO @ Tue, 16 Jun 2020 12:00:48: start X-correlation... INFO @ Tue, 16 Jun 2020 12:00:48: end of X-cor INFO @ Tue, 16 Jun 2020 12:00:48: #2 finished! INFO @ Tue, 16 Jun 2020 12:00:48: #2 predicted fragment length is 217 bps INFO @ Tue, 16 Jun 2020 12:00:48: #2 alternative fragment length(s) may be 217 bps INFO @ Tue, 16 Jun 2020 12:00:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.20_model.r WARNING @ Tue, 16 Jun 2020 12:00:48: #2 Since the d (217) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:00:48: #2 You may need to consider one of the other alternative d(s): 217 WARNING @ Tue, 16 Jun 2020 12:00:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:00:48: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:00:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:00:49: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:00:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:00:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.05_summits.bed INFO @ Tue, 16 Jun 2020 12:00:49: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1264 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:01:01: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:01:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:01:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.10_summits.bed INFO @ Tue, 16 Jun 2020 12:01:01: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (594 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:01:17: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:01:30: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:01:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:01:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619556/SRX6619556.20_summits.bed INFO @ Tue, 16 Jun 2020 12:01:30: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (319 records, 4 fields): 1 millis CompletedMACS2peakCalling