Job ID = 6368856 SRX = SRX6619554 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:30:57 prefetch.2.10.7: 1) Downloading 'SRR9866055'... 2020-06-16T00:30:57 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:53:21 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:53:21 prefetch.2.10.7: 1) 'SRR9866055' was downloaded successfully 2020-06-16T00:53:21 prefetch.2.10.7: 'SRR9866055' has 0 unresolved dependencies Read 40624508 spots for SRR9866055/SRR9866055.sra Written 40624508 spots for SRR9866055/SRR9866055.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:40:56 40624508 reads; of these: 40624508 (100.00%) were paired; of these: 13365884 (32.90%) aligned concordantly 0 times 20769827 (51.13%) aligned concordantly exactly 1 time 6488797 (15.97%) aligned concordantly >1 times ---- 13365884 pairs aligned concordantly 0 times; of these: 7742658 (57.93%) aligned discordantly 1 time ---- 5623226 pairs aligned 0 times concordantly or discordantly; of these: 11246452 mates make up the pairs; of these: 5938853 (52.81%) aligned 0 times 1613940 (14.35%) aligned exactly 1 time 3693659 (32.84%) aligned >1 times 92.69% overall alignment rate Time searching: 01:40:57 Overall time: 01:40:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 5747742 / 34857361 = 0.1649 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:12:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:12:43: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:12:43: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:12:53: 1000000 INFO @ Tue, 16 Jun 2020 12:13:03: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:13:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:13:13: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:13:13: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:13:13: 3000000 INFO @ Tue, 16 Jun 2020 12:13:24: 1000000 INFO @ Tue, 16 Jun 2020 12:13:25: 4000000 INFO @ Tue, 16 Jun 2020 12:13:35: 2000000 INFO @ Tue, 16 Jun 2020 12:13:37: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 12:13:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 12:13:43: #1 read tag files... INFO @ Tue, 16 Jun 2020 12:13:43: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 12:13:47: 3000000 INFO @ Tue, 16 Jun 2020 12:13:49: 6000000 INFO @ Tue, 16 Jun 2020 12:13:55: 1000000 INFO @ Tue, 16 Jun 2020 12:13:59: 4000000 INFO @ Tue, 16 Jun 2020 12:14:01: 7000000 INFO @ Tue, 16 Jun 2020 12:14:08: 2000000 INFO @ Tue, 16 Jun 2020 12:14:10: 5000000 INFO @ Tue, 16 Jun 2020 12:14:13: 8000000 INFO @ Tue, 16 Jun 2020 12:14:21: 3000000 INFO @ Tue, 16 Jun 2020 12:14:22: 6000000 INFO @ Tue, 16 Jun 2020 12:14:25: 9000000 INFO @ Tue, 16 Jun 2020 12:14:33: 7000000 INFO @ Tue, 16 Jun 2020 12:14:34: 4000000 INFO @ Tue, 16 Jun 2020 12:14:37: 10000000 INFO @ Tue, 16 Jun 2020 12:14:44: 8000000 INFO @ Tue, 16 Jun 2020 12:14:47: 5000000 INFO @ Tue, 16 Jun 2020 12:14:49: 11000000 INFO @ Tue, 16 Jun 2020 12:14:56: 9000000 INFO @ Tue, 16 Jun 2020 12:15:01: 6000000 INFO @ Tue, 16 Jun 2020 12:15:01: 12000000 INFO @ Tue, 16 Jun 2020 12:15:08: 10000000 INFO @ Tue, 16 Jun 2020 12:15:13: 13000000 INFO @ Tue, 16 Jun 2020 12:15:14: 7000000 INFO @ Tue, 16 Jun 2020 12:15:19: 11000000 INFO @ Tue, 16 Jun 2020 12:15:25: 14000000 INFO @ Tue, 16 Jun 2020 12:15:28: 8000000 INFO @ Tue, 16 Jun 2020 12:15:31: 12000000 INFO @ Tue, 16 Jun 2020 12:15:38: 15000000 INFO @ Tue, 16 Jun 2020 12:15:41: 9000000 INFO @ Tue, 16 Jun 2020 12:15:43: 13000000 INFO @ Tue, 16 Jun 2020 12:15:51: 16000000 INFO @ Tue, 16 Jun 2020 12:15:54: 10000000 INFO @ Tue, 16 Jun 2020 12:15:55: 14000000 INFO @ Tue, 16 Jun 2020 12:16:03: 17000000 INFO @ Tue, 16 Jun 2020 12:16:07: 11000000 INFO @ Tue, 16 Jun 2020 12:16:07: 15000000 INFO @ Tue, 16 Jun 2020 12:16:15: 18000000 INFO @ Tue, 16 Jun 2020 12:16:19: 16000000 INFO @ Tue, 16 Jun 2020 12:16:19: 12000000 INFO @ Tue, 16 Jun 2020 12:16:28: 19000000 INFO @ Tue, 16 Jun 2020 12:16:31: 17000000 INFO @ Tue, 16 Jun 2020 12:16:32: 13000000 INFO @ Tue, 16 Jun 2020 12:16:40: 20000000 INFO @ Tue, 16 Jun 2020 12:16:43: 18000000 INFO @ Tue, 16 Jun 2020 12:16:44: 14000000 INFO @ Tue, 16 Jun 2020 12:16:52: 21000000 INFO @ Tue, 16 Jun 2020 12:16:55: 19000000 INFO @ Tue, 16 Jun 2020 12:16:57: 15000000 INFO @ Tue, 16 Jun 2020 12:17:04: 22000000 INFO @ Tue, 16 Jun 2020 12:17:07: 20000000 INFO @ Tue, 16 Jun 2020 12:17:09: 16000000 INFO @ Tue, 16 Jun 2020 12:17:16: 23000000 INFO @ Tue, 16 Jun 2020 12:17:18: 21000000 INFO @ Tue, 16 Jun 2020 12:17:21: 17000000 INFO @ Tue, 16 Jun 2020 12:17:28: 24000000 INFO @ Tue, 16 Jun 2020 12:17:30: 22000000 INFO @ Tue, 16 Jun 2020 12:17:33: 18000000 INFO @ Tue, 16 Jun 2020 12:17:40: 25000000 INFO @ Tue, 16 Jun 2020 12:17:41: 23000000 INFO @ Tue, 16 Jun 2020 12:17:46: 19000000 INFO @ Tue, 16 Jun 2020 12:17:53: 26000000 INFO @ Tue, 16 Jun 2020 12:17:53: 24000000 INFO @ Tue, 16 Jun 2020 12:17:58: 20000000 INFO @ Tue, 16 Jun 2020 12:18:04: 25000000 INFO @ Tue, 16 Jun 2020 12:18:05: 27000000 INFO @ Tue, 16 Jun 2020 12:18:11: 21000000 INFO @ Tue, 16 Jun 2020 12:18:16: 26000000 INFO @ Tue, 16 Jun 2020 12:18:17: 28000000 INFO @ Tue, 16 Jun 2020 12:18:23: 22000000 INFO @ Tue, 16 Jun 2020 12:18:27: 27000000 INFO @ Tue, 16 Jun 2020 12:18:29: 29000000 INFO @ Tue, 16 Jun 2020 12:18:35: 23000000 INFO @ Tue, 16 Jun 2020 12:18:39: 28000000 INFO @ Tue, 16 Jun 2020 12:18:42: 30000000 INFO @ Tue, 16 Jun 2020 12:18:48: 24000000 INFO @ Tue, 16 Jun 2020 12:18:50: 29000000 INFO @ Tue, 16 Jun 2020 12:18:54: 31000000 INFO @ Tue, 16 Jun 2020 12:19:00: 25000000 INFO @ Tue, 16 Jun 2020 12:19:01: 30000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 12:19:06: 32000000 INFO @ Tue, 16 Jun 2020 12:19:12: 26000000 INFO @ Tue, 16 Jun 2020 12:19:13: 31000000 INFO @ Tue, 16 Jun 2020 12:19:18: 33000000 INFO @ Tue, 16 Jun 2020 12:19:25: 32000000 INFO @ Tue, 16 Jun 2020 12:19:25: 27000000 INFO @ Tue, 16 Jun 2020 12:19:31: 34000000 INFO @ Tue, 16 Jun 2020 12:19:36: 33000000 INFO @ Tue, 16 Jun 2020 12:19:37: 28000000 INFO @ Tue, 16 Jun 2020 12:19:43: 35000000 INFO @ Tue, 16 Jun 2020 12:19:48: 34000000 INFO @ Tue, 16 Jun 2020 12:19:49: 29000000 INFO @ Tue, 16 Jun 2020 12:19:56: 36000000 INFO @ Tue, 16 Jun 2020 12:19:59: 35000000 INFO @ Tue, 16 Jun 2020 12:20:02: 30000000 INFO @ Tue, 16 Jun 2020 12:20:09: 37000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 12:20:11: 36000000 INFO @ Tue, 16 Jun 2020 12:20:14: 31000000 INFO @ Tue, 16 Jun 2020 12:20:22: 38000000 INFO @ Tue, 16 Jun 2020 12:20:23: 37000000 INFO @ Tue, 16 Jun 2020 12:20:27: 32000000 INFO @ Tue, 16 Jun 2020 12:20:34: 39000000 INFO @ Tue, 16 Jun 2020 12:20:34: 38000000 INFO @ Tue, 16 Jun 2020 12:20:39: 33000000 INFO @ Tue, 16 Jun 2020 12:20:46: 39000000 INFO @ Tue, 16 Jun 2020 12:20:47: 40000000 INFO @ Tue, 16 Jun 2020 12:20:52: 34000000 INFO @ Tue, 16 Jun 2020 12:20:58: 40000000 INFO @ Tue, 16 Jun 2020 12:21:00: 41000000 INFO @ Tue, 16 Jun 2020 12:21:04: 35000000 INFO @ Tue, 16 Jun 2020 12:21:09: 41000000 INFO @ Tue, 16 Jun 2020 12:21:13: 42000000 INFO @ Tue, 16 Jun 2020 12:21:17: 36000000 INFO @ Tue, 16 Jun 2020 12:21:21: 42000000 INFO @ Tue, 16 Jun 2020 12:21:26: 43000000 INFO @ Tue, 16 Jun 2020 12:21:29: 37000000 INFO @ Tue, 16 Jun 2020 12:21:33: 43000000 INFO @ Tue, 16 Jun 2020 12:21:38: 44000000 INFO @ Tue, 16 Jun 2020 12:21:42: 38000000 INFO @ Tue, 16 Jun 2020 12:21:45: 44000000 INFO @ Tue, 16 Jun 2020 12:21:51: 45000000 INFO @ Tue, 16 Jun 2020 12:21:55: 39000000 INFO @ Tue, 16 Jun 2020 12:21:56: 45000000 INFO @ Tue, 16 Jun 2020 12:22:04: 46000000 INFO @ Tue, 16 Jun 2020 12:22:07: 40000000 INFO @ Tue, 16 Jun 2020 12:22:08: 46000000 INFO @ Tue, 16 Jun 2020 12:22:16: 47000000 INFO @ Tue, 16 Jun 2020 12:22:19: 47000000 INFO @ Tue, 16 Jun 2020 12:22:20: 41000000 INFO @ Tue, 16 Jun 2020 12:22:29: 48000000 INFO @ Tue, 16 Jun 2020 12:22:31: 48000000 INFO @ Tue, 16 Jun 2020 12:22:33: 42000000 INFO @ Tue, 16 Jun 2020 12:22:41: 49000000 INFO @ Tue, 16 Jun 2020 12:22:43: 49000000 INFO @ Tue, 16 Jun 2020 12:22:46: 43000000 INFO @ Tue, 16 Jun 2020 12:22:54: 50000000 INFO @ Tue, 16 Jun 2020 12:22:55: 50000000 INFO @ Tue, 16 Jun 2020 12:22:59: 44000000 INFO @ Tue, 16 Jun 2020 12:23:07: 51000000 INFO @ Tue, 16 Jun 2020 12:23:08: 51000000 INFO @ Tue, 16 Jun 2020 12:23:12: 45000000 INFO @ Tue, 16 Jun 2020 12:23:20: 52000000 INFO @ Tue, 16 Jun 2020 12:23:21: 52000000 INFO @ Tue, 16 Jun 2020 12:23:24: 46000000 INFO @ Tue, 16 Jun 2020 12:23:33: 53000000 INFO @ Tue, 16 Jun 2020 12:23:35: 53000000 INFO @ Tue, 16 Jun 2020 12:23:37: 47000000 INFO @ Tue, 16 Jun 2020 12:23:47: 54000000 INFO @ Tue, 16 Jun 2020 12:23:48: 54000000 INFO @ Tue, 16 Jun 2020 12:23:49: 48000000 INFO @ Tue, 16 Jun 2020 12:24:02: 49000000 INFO @ Tue, 16 Jun 2020 12:24:02: 55000000 INFO @ Tue, 16 Jun 2020 12:24:02: 55000000 INFO @ Tue, 16 Jun 2020 12:24:15: 50000000 INFO @ Tue, 16 Jun 2020 12:24:17: 56000000 INFO @ Tue, 16 Jun 2020 12:24:17: 56000000 INFO @ Tue, 16 Jun 2020 12:24:27: 51000000 INFO @ Tue, 16 Jun 2020 12:24:30: 57000000 INFO @ Tue, 16 Jun 2020 12:24:31: 57000000 INFO @ Tue, 16 Jun 2020 12:24:40: 52000000 INFO @ Tue, 16 Jun 2020 12:24:43: 58000000 INFO @ Tue, 16 Jun 2020 12:24:44: 58000000 INFO @ Tue, 16 Jun 2020 12:24:53: 53000000 INFO @ Tue, 16 Jun 2020 12:24:56: 59000000 INFO @ Tue, 16 Jun 2020 12:24:56: 59000000 INFO @ Tue, 16 Jun 2020 12:25:06: 54000000 INFO @ Tue, 16 Jun 2020 12:25:08: 60000000 INFO @ Tue, 16 Jun 2020 12:25:09: 60000000 INFO @ Tue, 16 Jun 2020 12:25:19: 55000000 INFO @ Tue, 16 Jun 2020 12:25:21: 61000000 INFO @ Tue, 16 Jun 2020 12:25:22: 61000000 INFO @ Tue, 16 Jun 2020 12:25:32: 56000000 INFO @ Tue, 16 Jun 2020 12:25:34: 62000000 INFO @ Tue, 16 Jun 2020 12:25:35: 62000000 INFO @ Tue, 16 Jun 2020 12:25:45: 57000000 INFO @ Tue, 16 Jun 2020 12:25:48: 63000000 INFO @ Tue, 16 Jun 2020 12:25:48: 63000000 INFO @ Tue, 16 Jun 2020 12:25:58: 58000000 INFO @ Tue, 16 Jun 2020 12:25:59: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:25:59: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:25:59: #1 total tags in treatment: 22763648 INFO @ Tue, 16 Jun 2020 12:25:59: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:25:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:26:00: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:26:00: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:26:00: #1 total tags in treatment: 22763648 INFO @ Tue, 16 Jun 2020 12:26:00: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:26:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:26:00: #1 tags after filtering in treatment: 17477487 INFO @ Tue, 16 Jun 2020 12:26:00: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 12:26:00: #1 finished! INFO @ Tue, 16 Jun 2020 12:26:00: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:26:00: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:26:00: #1 tags after filtering in treatment: 17477487 INFO @ Tue, 16 Jun 2020 12:26:00: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 12:26:00: #1 finished! INFO @ Tue, 16 Jun 2020 12:26:00: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:26:00: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:26:01: #2 number of paired peaks: 1894 INFO @ Tue, 16 Jun 2020 12:26:01: start model_add_line... INFO @ Tue, 16 Jun 2020 12:26:01: start X-correlation... INFO @ Tue, 16 Jun 2020 12:26:01: end of X-cor INFO @ Tue, 16 Jun 2020 12:26:01: #2 finished! INFO @ Tue, 16 Jun 2020 12:26:01: #2 predicted fragment length is 248 bps INFO @ Tue, 16 Jun 2020 12:26:01: #2 alternative fragment length(s) may be 4,248 bps INFO @ Tue, 16 Jun 2020 12:26:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.05_model.r WARNING @ Tue, 16 Jun 2020 12:26:01: #2 Since the d (248) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:26:01: #2 You may need to consider one of the other alternative d(s): 4,248 WARNING @ Tue, 16 Jun 2020 12:26:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:26:01: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:26:01: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:26:01: #2 number of paired peaks: 1894 INFO @ Tue, 16 Jun 2020 12:26:01: start model_add_line... INFO @ Tue, 16 Jun 2020 12:26:02: start X-correlation... INFO @ Tue, 16 Jun 2020 12:26:02: end of X-cor INFO @ Tue, 16 Jun 2020 12:26:02: #2 finished! INFO @ Tue, 16 Jun 2020 12:26:02: #2 predicted fragment length is 248 bps INFO @ Tue, 16 Jun 2020 12:26:02: #2 alternative fragment length(s) may be 4,248 bps INFO @ Tue, 16 Jun 2020 12:26:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.10_model.r WARNING @ Tue, 16 Jun 2020 12:26:02: #2 Since the d (248) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:26:02: #2 You may need to consider one of the other alternative d(s): 4,248 WARNING @ Tue, 16 Jun 2020 12:26:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:26:02: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:26:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:26:09: 59000000 INFO @ Tue, 16 Jun 2020 12:26:20: 60000000 INFO @ Tue, 16 Jun 2020 12:26:30: 61000000 INFO @ Tue, 16 Jun 2020 12:26:41: 62000000 INFO @ Tue, 16 Jun 2020 12:26:51: 63000000 INFO @ Tue, 16 Jun 2020 12:26:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:26:55: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:27:00: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 12:27:00: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 12:27:00: #1 total tags in treatment: 22763648 INFO @ Tue, 16 Jun 2020 12:27:00: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 12:27:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 12:27:01: #1 tags after filtering in treatment: 17477487 INFO @ Tue, 16 Jun 2020 12:27:01: #1 Redundant rate of treatment: 0.23 INFO @ Tue, 16 Jun 2020 12:27:01: #1 finished! INFO @ Tue, 16 Jun 2020 12:27:01: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 12:27:01: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 12:27:02: #2 number of paired peaks: 1894 INFO @ Tue, 16 Jun 2020 12:27:02: start model_add_line... INFO @ Tue, 16 Jun 2020 12:27:02: start X-correlation... INFO @ Tue, 16 Jun 2020 12:27:02: end of X-cor INFO @ Tue, 16 Jun 2020 12:27:02: #2 finished! INFO @ Tue, 16 Jun 2020 12:27:02: #2 predicted fragment length is 248 bps INFO @ Tue, 16 Jun 2020 12:27:02: #2 alternative fragment length(s) may be 4,248 bps INFO @ Tue, 16 Jun 2020 12:27:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.20_model.r WARNING @ Tue, 16 Jun 2020 12:27:02: #2 Since the d (248) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 12:27:02: #2 You may need to consider one of the other alternative d(s): 4,248 WARNING @ Tue, 16 Jun 2020 12:27:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 12:27:02: #3 Call peaks... INFO @ Tue, 16 Jun 2020 12:27:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 12:27:14: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.05_peaks.xls INFO @ Tue, 16 Jun 2020 12:27:14: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.10_peaks.xls INFO @ Tue, 16 Jun 2020 12:27:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:27:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:27:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.05_summits.bed INFO @ Tue, 16 Jun 2020 12:27:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.10_summits.bed INFO @ Tue, 16 Jun 2020 12:27:14: Done! INFO @ Tue, 16 Jun 2020 12:27:14: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (7075 records, 4 fields): 8 millis CompletedMACS2peakCalling pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (12304 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 12:27:54: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 12:28:13: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.20_peaks.xls INFO @ Tue, 16 Jun 2020 12:28:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 12:28:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619554/SRX6619554.20_summits.bed INFO @ Tue, 16 Jun 2020 12:28:13: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2952 records, 4 fields): 4 millis CompletedMACS2peakCalling