Job ID = 6368855 SRX = SRX6619553 Genome = ce11 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-16T00:26:34 prefetch.2.10.7: 1) Downloading 'SRR9866059'... 2020-06-16T00:26:34 prefetch.2.10.7: Downloading via HTTPS... 2020-06-16T00:39:30 prefetch.2.10.7: HTTPS download succeed 2020-06-16T00:39:30 prefetch.2.10.7: 1) 'SRR9866059' was downloaded successfully 2020-06-16T00:39:30 prefetch.2.10.7: 'SRR9866059' has 0 unresolved dependencies Read 33886652 spots for SRR9866059/SRR9866059.sra Written 33886652 spots for SRR9866059/SRR9866059.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:01:48 33886652 reads; of these: 33886652 (100.00%) were paired; of these: 18906274 (55.79%) aligned concordantly 0 times 12341672 (36.42%) aligned concordantly exactly 1 time 2638706 (7.79%) aligned concordantly >1 times ---- 18906274 pairs aligned concordantly 0 times; of these: 9163411 (48.47%) aligned discordantly 1 time ---- 9742863 pairs aligned 0 times concordantly or discordantly; of these: 19485726 mates make up the pairs; of these: 16262487 (83.46%) aligned 0 times 1339811 (6.88%) aligned exactly 1 time 1883428 (9.67%) aligned >1 times 76.00% overall alignment rate Time searching: 01:01:48 Overall time: 01:01:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2865598 / 23572400 = 0.1216 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:11:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:11:42: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:11:42: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:11:49: 1000000 INFO @ Tue, 16 Jun 2020 11:11:55: 2000000 INFO @ Tue, 16 Jun 2020 11:12:02: 3000000 INFO @ Tue, 16 Jun 2020 11:12:09: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:12:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:12:12: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:12:12: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:12:16: 5000000 INFO @ Tue, 16 Jun 2020 11:12:21: 1000000 INFO @ Tue, 16 Jun 2020 11:12:24: 6000000 INFO @ Tue, 16 Jun 2020 11:12:29: 2000000 INFO @ Tue, 16 Jun 2020 11:12:31: 7000000 INFO @ Tue, 16 Jun 2020 11:12:38: 3000000 INFO @ Tue, 16 Jun 2020 11:12:38: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 16 Jun 2020 11:12:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 16 Jun 2020 11:12:42: #1 read tag files... INFO @ Tue, 16 Jun 2020 11:12:42: #1 read treatment tags... INFO @ Tue, 16 Jun 2020 11:12:46: 9000000 INFO @ Tue, 16 Jun 2020 11:12:46: 4000000 INFO @ Tue, 16 Jun 2020 11:12:49: 1000000 INFO @ Tue, 16 Jun 2020 11:12:53: 10000000 INFO @ Tue, 16 Jun 2020 11:12:55: 5000000 INFO @ Tue, 16 Jun 2020 11:12:57: 2000000 INFO @ Tue, 16 Jun 2020 11:13:00: 11000000 INFO @ Tue, 16 Jun 2020 11:13:03: 6000000 INFO @ Tue, 16 Jun 2020 11:13:04: 3000000 INFO @ Tue, 16 Jun 2020 11:13:08: 12000000 INFO @ Tue, 16 Jun 2020 11:13:12: 4000000 INFO @ Tue, 16 Jun 2020 11:13:12: 7000000 INFO @ Tue, 16 Jun 2020 11:13:15: 13000000 INFO @ Tue, 16 Jun 2020 11:13:19: 5000000 INFO @ Tue, 16 Jun 2020 11:13:20: 8000000 INFO @ Tue, 16 Jun 2020 11:13:23: 14000000 INFO @ Tue, 16 Jun 2020 11:13:27: 6000000 INFO @ Tue, 16 Jun 2020 11:13:29: 9000000 INFO @ Tue, 16 Jun 2020 11:13:30: 15000000 INFO @ Tue, 16 Jun 2020 11:13:34: 7000000 INFO @ Tue, 16 Jun 2020 11:13:37: 10000000 INFO @ Tue, 16 Jun 2020 11:13:38: 16000000 INFO @ Tue, 16 Jun 2020 11:13:41: 8000000 INFO @ Tue, 16 Jun 2020 11:13:45: 17000000 INFO @ Tue, 16 Jun 2020 11:13:46: 11000000 INFO @ Tue, 16 Jun 2020 11:13:49: 9000000 INFO @ Tue, 16 Jun 2020 11:13:53: 18000000 INFO @ Tue, 16 Jun 2020 11:13:54: 12000000 INFO @ Tue, 16 Jun 2020 11:13:56: 10000000 INFO @ Tue, 16 Jun 2020 11:14:00: 19000000 INFO @ Tue, 16 Jun 2020 11:14:03: 13000000 INFO @ Tue, 16 Jun 2020 11:14:04: 11000000 INFO @ Tue, 16 Jun 2020 11:14:08: 20000000 INFO @ Tue, 16 Jun 2020 11:14:11: 12000000 INFO @ Tue, 16 Jun 2020 11:14:11: 14000000 INFO @ Tue, 16 Jun 2020 11:14:15: 21000000 INFO @ Tue, 16 Jun 2020 11:14:19: 13000000 INFO @ Tue, 16 Jun 2020 11:14:20: 15000000 INFO @ Tue, 16 Jun 2020 11:14:22: 22000000 INFO @ Tue, 16 Jun 2020 11:14:26: 14000000 INFO @ Tue, 16 Jun 2020 11:14:28: 16000000 INFO @ Tue, 16 Jun 2020 11:14:30: 23000000 INFO @ Tue, 16 Jun 2020 11:14:34: 15000000 INFO @ Tue, 16 Jun 2020 11:14:37: 17000000 INFO @ Tue, 16 Jun 2020 11:14:37: 24000000 INFO @ Tue, 16 Jun 2020 11:14:41: 16000000 INFO @ Tue, 16 Jun 2020 11:14:45: 25000000 INFO @ Tue, 16 Jun 2020 11:14:45: 18000000 INFO @ Tue, 16 Jun 2020 11:14:49: 17000000 INFO @ Tue, 16 Jun 2020 11:14:52: 26000000 INFO @ Tue, 16 Jun 2020 11:14:54: 19000000 INFO @ Tue, 16 Jun 2020 11:14:56: 18000000 INFO @ Tue, 16 Jun 2020 11:15:00: 27000000 INFO @ Tue, 16 Jun 2020 11:15:02: 20000000 INFO @ Tue, 16 Jun 2020 11:15:04: 19000000 INFO @ Tue, 16 Jun 2020 11:15:07: 28000000 INFO @ Tue, 16 Jun 2020 11:15:11: 21000000 INFO @ Tue, 16 Jun 2020 11:15:12: 20000000 INFO @ Tue, 16 Jun 2020 11:15:15: 29000000 INFO @ Tue, 16 Jun 2020 11:15:19: 22000000 INFO @ Tue, 16 Jun 2020 11:15:19: 21000000 INFO @ Tue, 16 Jun 2020 11:15:22: 30000000 INFO @ Tue, 16 Jun 2020 11:15:27: 22000000 INFO @ Tue, 16 Jun 2020 11:15:27: 23000000 INFO @ Tue, 16 Jun 2020 11:15:30: 31000000 INFO @ Tue, 16 Jun 2020 11:15:34: 23000000 INFO @ Tue, 16 Jun 2020 11:15:36: 24000000 INFO @ Tue, 16 Jun 2020 11:15:37: 32000000 INFO @ Tue, 16 Jun 2020 11:15:41: 24000000 INFO @ Tue, 16 Jun 2020 11:15:44: 25000000 INFO @ Tue, 16 Jun 2020 11:15:45: 33000000 INFO @ Tue, 16 Jun 2020 11:15:49: 25000000 INFO @ Tue, 16 Jun 2020 11:15:52: 26000000 INFO @ Tue, 16 Jun 2020 11:15:52: 34000000 INFO @ Tue, 16 Jun 2020 11:15:56: 26000000 INFO @ Tue, 16 Jun 2020 11:16:00: 35000000 INFO @ Tue, 16 Jun 2020 11:16:01: 27000000 INFO @ Tue, 16 Jun 2020 11:16:04: 27000000 INFO @ Tue, 16 Jun 2020 11:16:07: 36000000 INFO @ Tue, 16 Jun 2020 11:16:09: 28000000 INFO @ Tue, 16 Jun 2020 11:16:11: 28000000 INFO @ Tue, 16 Jun 2020 11:16:15: 37000000 INFO @ Tue, 16 Jun 2020 11:16:17: 29000000 INFO @ Tue, 16 Jun 2020 11:16:19: 29000000 INFO @ Tue, 16 Jun 2020 11:16:22: 38000000 INFO @ Tue, 16 Jun 2020 11:16:25: 30000000 INFO @ Tue, 16 Jun 2020 11:16:26: 30000000 INFO @ Tue, 16 Jun 2020 11:16:29: 39000000 INFO @ Tue, 16 Jun 2020 11:16:34: 31000000 INFO @ Tue, 16 Jun 2020 11:16:34: 31000000 INFO @ Tue, 16 Jun 2020 11:16:37: 40000000 INFO @ Tue, 16 Jun 2020 11:16:42: 32000000 INFO @ Tue, 16 Jun 2020 11:16:43: 32000000 INFO @ Tue, 16 Jun 2020 11:16:44: 41000000 INFO @ Tue, 16 Jun 2020 11:16:50: 33000000 INFO @ Tue, 16 Jun 2020 11:16:51: 33000000 INFO @ Tue, 16 Jun 2020 11:16:51: 42000000 INFO @ Tue, 16 Jun 2020 11:16:58: 43000000 INFO @ Tue, 16 Jun 2020 11:16:59: 34000000 INFO @ Tue, 16 Jun 2020 11:16:59: 34000000 INFO @ Tue, 16 Jun 2020 11:17:05: 44000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 16 Jun 2020 11:17:07: 35000000 INFO @ Tue, 16 Jun 2020 11:17:07: 35000000 INFO @ Tue, 16 Jun 2020 11:17:12: 45000000 INFO @ Tue, 16 Jun 2020 11:17:15: 36000000 INFO @ Tue, 16 Jun 2020 11:17:16: 36000000 INFO @ Tue, 16 Jun 2020 11:17:18: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:17:18: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:17:18: #1 total tags in treatment: 13010615 INFO @ Tue, 16 Jun 2020 11:17:18: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:17:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:17:18: #1 tags after filtering in treatment: 11131651 INFO @ Tue, 16 Jun 2020 11:17:18: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:17:18: #1 finished! INFO @ Tue, 16 Jun 2020 11:17:18: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:17:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:17:19: #2 number of paired peaks: 321 WARNING @ Tue, 16 Jun 2020 11:17:19: Fewer paired peaks (321) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 321 pairs to build model! INFO @ Tue, 16 Jun 2020 11:17:19: start model_add_line... INFO @ Tue, 16 Jun 2020 11:17:19: start X-correlation... INFO @ Tue, 16 Jun 2020 11:17:19: end of X-cor INFO @ Tue, 16 Jun 2020 11:17:19: #2 finished! INFO @ Tue, 16 Jun 2020 11:17:19: #2 predicted fragment length is 205 bps INFO @ Tue, 16 Jun 2020 11:17:19: #2 alternative fragment length(s) may be 205 bps INFO @ Tue, 16 Jun 2020 11:17:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.05_model.r WARNING @ Tue, 16 Jun 2020 11:17:19: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:17:19: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Tue, 16 Jun 2020 11:17:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:17:19: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:17:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:17:24: 37000000 INFO @ Tue, 16 Jun 2020 11:17:24: 37000000 INFO @ Tue, 16 Jun 2020 11:17:32: 38000000 INFO @ Tue, 16 Jun 2020 11:17:32: 38000000 INFO @ Tue, 16 Jun 2020 11:17:40: 39000000 INFO @ Tue, 16 Jun 2020 11:17:40: 39000000 INFO @ Tue, 16 Jun 2020 11:17:43: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:17:48: 40000000 INFO @ Tue, 16 Jun 2020 11:17:49: 40000000 INFO @ Tue, 16 Jun 2020 11:17:54: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.05_peaks.xls INFO @ Tue, 16 Jun 2020 11:17:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.05_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:17:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.05_summits.bed INFO @ Tue, 16 Jun 2020 11:17:54: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (524 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:17:56: 41000000 INFO @ Tue, 16 Jun 2020 11:17:57: 41000000 INFO @ Tue, 16 Jun 2020 11:18:04: 42000000 INFO @ Tue, 16 Jun 2020 11:18:05: 42000000 INFO @ Tue, 16 Jun 2020 11:18:12: 43000000 INFO @ Tue, 16 Jun 2020 11:18:13: 43000000 BigWig に変換しました。 INFO @ Tue, 16 Jun 2020 11:18:20: 44000000 INFO @ Tue, 16 Jun 2020 11:18:21: 44000000 INFO @ Tue, 16 Jun 2020 11:18:28: 45000000 INFO @ Tue, 16 Jun 2020 11:18:29: 45000000 INFO @ Tue, 16 Jun 2020 11:18:35: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:18:35: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:18:35: #1 total tags in treatment: 13010615 INFO @ Tue, 16 Jun 2020 11:18:35: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:18:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:18:35: #1 tags after filtering in treatment: 11131651 INFO @ Tue, 16 Jun 2020 11:18:35: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:18:35: #1 finished! INFO @ Tue, 16 Jun 2020 11:18:35: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:18:35: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:18:35: #1 tag size is determined as 150 bps INFO @ Tue, 16 Jun 2020 11:18:35: #1 tag size = 150 INFO @ Tue, 16 Jun 2020 11:18:35: #1 total tags in treatment: 13010615 INFO @ Tue, 16 Jun 2020 11:18:35: #1 user defined the maximum tags... INFO @ Tue, 16 Jun 2020 11:18:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 16 Jun 2020 11:18:36: #1 tags after filtering in treatment: 11131651 INFO @ Tue, 16 Jun 2020 11:18:36: #1 Redundant rate of treatment: 0.14 INFO @ Tue, 16 Jun 2020 11:18:36: #1 finished! INFO @ Tue, 16 Jun 2020 11:18:36: #2 Build Peak Model... INFO @ Tue, 16 Jun 2020 11:18:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 16 Jun 2020 11:18:36: #2 number of paired peaks: 321 WARNING @ Tue, 16 Jun 2020 11:18:36: Fewer paired peaks (321) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 321 pairs to build model! INFO @ Tue, 16 Jun 2020 11:18:36: start model_add_line... INFO @ Tue, 16 Jun 2020 11:18:36: start X-correlation... INFO @ Tue, 16 Jun 2020 11:18:36: end of X-cor INFO @ Tue, 16 Jun 2020 11:18:36: #2 finished! INFO @ Tue, 16 Jun 2020 11:18:36: #2 predicted fragment length is 205 bps INFO @ Tue, 16 Jun 2020 11:18:36: #2 alternative fragment length(s) may be 205 bps INFO @ Tue, 16 Jun 2020 11:18:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.10_model.r WARNING @ Tue, 16 Jun 2020 11:18:36: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:18:36: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Tue, 16 Jun 2020 11:18:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:18:36: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:18:36: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:18:36: #2 number of paired peaks: 321 WARNING @ Tue, 16 Jun 2020 11:18:36: Fewer paired peaks (321) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 321 pairs to build model! INFO @ Tue, 16 Jun 2020 11:18:36: start model_add_line... INFO @ Tue, 16 Jun 2020 11:18:37: start X-correlation... INFO @ Tue, 16 Jun 2020 11:18:37: end of X-cor INFO @ Tue, 16 Jun 2020 11:18:37: #2 finished! INFO @ Tue, 16 Jun 2020 11:18:37: #2 predicted fragment length is 205 bps INFO @ Tue, 16 Jun 2020 11:18:37: #2 alternative fragment length(s) may be 205 bps INFO @ Tue, 16 Jun 2020 11:18:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.20_model.r WARNING @ Tue, 16 Jun 2020 11:18:37: #2 Since the d (205) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 16 Jun 2020 11:18:37: #2 You may need to consider one of the other alternative d(s): 205 WARNING @ Tue, 16 Jun 2020 11:18:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 16 Jun 2020 11:18:37: #3 Call peaks... INFO @ Tue, 16 Jun 2020 11:18:37: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 16 Jun 2020 11:18:59: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:19:00: #3 Call peaks for each chromosome... INFO @ Tue, 16 Jun 2020 11:19:10: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.10_peaks.xls INFO @ Tue, 16 Jun 2020 11:19:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.10_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:19:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.10_summits.bed INFO @ Tue, 16 Jun 2020 11:19:10: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (369 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Tue, 16 Jun 2020 11:19:11: #4 Write output xls file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.20_peaks.xls INFO @ Tue, 16 Jun 2020 11:19:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.20_peaks.narrowPeak INFO @ Tue, 16 Jun 2020 11:19:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce11/SRX6619553/SRX6619553.20_summits.bed INFO @ Tue, 16 Jun 2020 11:19:11: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (227 records, 4 fields): 2 millis CompletedMACS2peakCalling